Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

7293663 .. 7295076

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1076500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCCCAACCACGACCCTCTCCCTCCTCTACCACCGCCGCCGCCACAACCACCGCAAGTTCTGATGGATGAGCTATCTTGTCATCACCATCACCATAATCATCATTCCTCCATGGACATCGAGCTCCATAACGAACTTGGGTTCAATGTGGATAATCCATACAACACCACCAGTGGCCATAACGACAATGGGTACACCTTGCCTGGCTCAGGAAACGGATCATTGTTCAGTAGCGGCGGCGATGAGAGAGAGGGGAGTGGTGGGGGCATTTACCCAGATGATGGCACTATTACCGAGTCTTTTTTTGAGGATGGAGTTATGGAGTTCTCCAGAGAAATGGGTTCTATTGGAAGAGGAAGAAATCGCAAAGAATCCAAAAACCTTGCCATTGATCGCGTTCGGAGACAGCAGTTGAATGACAAGTTCTTCACCTTGAGGAATTTGATTCCCAACCGAACTCAGAATGATAAAGCATCAATTGTGGGAGATGCAATTGGTTACATAAACGAGCTTCTGAGGACAGTGGATGAGCTGAAATTGCTGGTGGAGAAGAAAAGGTGTGGGAGAGAGAGGATCAACAGGCACAAAACTGAACAAGATCGTGGTGCCGCCGGAGACGATGAGAGTTGCAACATTAAGCCTGTTGGTGAGCCTCATGACCAGTCCTACAACAATGGCTCTCTGAGGAGCTCATGGCTTCAAAGGAAATCCAAATACACCGAGGTTGATATCCGCATTATCGAAGATGAAGTTACCATCAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTTTGTGTCCAGGCTTCTTGACGAGCTGCAGCTTGATCTTCATCATGTTGCTGGTGGCCAAATTGGCAATTCCTACAGCTTCTTGTTCAATACCAAGATGTACGAAGGGTCTTGCTTGTATGCAAGTGCTATTGCTGGCAAGTTCATTGAGGTTCTGGACGGACAATATTCAGCAGTTCCACCTACCGGCAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

331

Amino Acids

36.98

Weight (kDa)

5.87

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	127 - 171	6.8e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccII	CGCG	1 cut(s)	396
AciI	CCGC	8 cut(s)	35, 38, 41, 53, 234, 237, 609, 733
AclWI	GGATC	2 cut(s)	226, 581
AcoI	YGGCCR	2 cut(s)	175, 850
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	2 cut(s)	194, 896
AfiI	CCNNNNNNNGG	3 cut(s)	209, 281, 980
AgsI	TTSAA	4 cut(s)	145, 415, 701, 883
AjnI	CCWGG	2 cut(s)	202, 803
AluBI	AGCT	8 cut(s)	73, 124, 511, 532, 690, 820, 826, 873
AluI	AGCT	8 cut(s)	73, 124, 511, 532, 690, 820, 826, 873
Alw21I	GWGCWC	2 cut(s)	126, 692
Alw26I	GTCTC	2 cut(s)	397, 609
AlwI	GGATC	2 cut(s)	226, 581
AoxI	GGCC	2 cut(s)	175, 850
ApeKI	GCWGC	2 cut(s)	820, 823
ApoI	RAATTY	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	77, 83, 421, 659
BalI	TGGCCA	2 cut(s)	177, 852
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	126, 692
Bbv12I	GWGCWC	2 cut(s)	126, 692
BbvI	GCAGC	2 cut(s)	807, 835
BccI	CCATC	5 cut(s)	58, 96, 275, 305, 764
BciT130I	CCWGG	2 cut(s)	204, 805
BcoDI	GTCTC	2 cut(s)	397, 609
BfmI	CTRYAG	2 cut(s)	821, 868
BglI	GCCNNNNNGGC	1 cut(s)	858
BisI	GCNGC	7 cut(s)	38, 41, 235, 238, 609, 821, 824
BlsI	GCNGC	7 cut(s)	39, 42, 236, 239, 610, 822, 825
Bme1390I	CCNGG	2 cut(s)	204, 805
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	204, 805
BmsI	GCATC	2 cut(s)	478, 482
BpmI	CTGGAG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	111, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 281, 980
Bse118I	RCCGGY	1 cut(s)	980
Bse1I	ACTGG	3 cut(s)	171, 661, 768
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	204, 805
BseDI	CCNNGG	2 cut(s)	111, 720
BseGI	GGATG	3 cut(s)	73, 316, 532
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	3 cut(s)	209, 281, 980
BseMII	CTCAG	4 cut(s)	222, 473, 506, 674
BseNI	ACTGG	3 cut(s)	171, 661, 768
BseRI	GAGGAG	2 cut(s)	15, 700
BseXI	GCAGC	2 cut(s)	807, 835
BsgI	GTGCAG	1 cut(s)	788
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	177, 852
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	2 cut(s)	126, 692
BsiSI	CCGG	2 cut(s)	612, 981
BslI	CCNNNNNNNGG	3 cut(s)	209, 281, 980
BsmAI	GTCTC	2 cut(s)	397, 609
BsmBI	CGTCTC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	177, 852
Bsp1286I	GDGCHC	2 cut(s)	126, 692
Bsp143I	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	8 cut(s)	35, 38, 41, 53, 234, 237, 609, 733
BspANI	GGCC	2 cut(s)	177, 852
BspCNI	CTCAG	4 cut(s)	221, 472, 507, 675
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	607
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	2 cut(s)	226, 581
BspT107I	GGYRCC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	980
BsrI	ACTGG	3 cut(s)	171, 661, 768
BssAI	RCCGGY	1 cut(s)	980
BssECI	CCNNGG	2 cut(s)	111, 720
BssMI	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	204, 805
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	4 cut(s)	208, 459, 515, 683
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	73, 316, 532
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	6 cut(s)	221, 394, 576, 601, 783, 832
BstMAI	GTCTC	2 cut(s)	397, 609
BstMBI	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 858
BstNI	CCWGG	2 cut(s)	204, 805
BstSCI	CCNGG	2 cut(s)	202, 803
BstSFI	CTRYAG	2 cut(s)	821, 868
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	807, 835
BstXI	CCANNNNNNTGG	2 cut(s)	337, 763
BsuRI	GGCC	2 cut(s)	177, 852
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	73, 316, 532
BtsIMutI	CAGTG	2 cut(s)	178, 528
Cac8I	GCNNGC	1 cut(s)	931
CciI	TCATGA	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	980
Csp6I	GTAC	2 cut(s)	193, 895
CviAII	CATG	4 cut(s)	112, 656, 693, 839
CviQI	GTAC	2 cut(s)	193, 895
DdeI	CTNAG	4 cut(s)	208, 459, 515, 683
DpnI	GATC	6 cut(s)	220, 393, 575, 600, 782, 831
DpnII	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
EaeI	YGGCCR	2 cut(s)	175, 850
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	2 cut(s)	124, 690
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	126, 692
Eco32I	GATATC	1 cut(s)	730
Eco53kI	GAGCTC	2 cut(s)	124, 690
EcoICRI	GAGCTC	2 cut(s)	124, 690
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	202, 803
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	126, 692
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	4 cut(s)	115, 659, 696, 842
FatI	CATG	4 cut(s)	111, 655, 692, 838
Fnu4HI	GCNGC	7 cut(s)	38, 41, 235, 238, 609, 821, 824
FokI	GGATG	3 cut(s)	80, 323, 539
FriOI	GRGCYC	2 cut(s)	126, 692
Fsp4HI	GCNGC	7 cut(s)	38, 41, 235, 238, 609, 821, 824
GluI	GCNGC	7 cut(s)	38, 41, 235, 238, 609, 821, 824
GsuI	CTGGAG	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	177, 852
HapII	CCGG	2 cut(s)	612, 981
Hin1II	CATG	4 cut(s)	115, 659, 696, 842
HinfI	GANTC	3 cut(s)	296, 371, 445
HpaII	CCGG	2 cut(s)	612, 981
HphI	GGTGA	4 cut(s)	77, 83, 421, 659
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	5 cut(s)	63, 402, 462, 516, 684
Hpy188III	TCNNGA	5 cut(s)	210, 330, 656, 812, 950
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	893
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	5 cut(s)	491, 630, 769, 823, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 858
HpyF3I	CTNAG	4 cut(s)	208, 459, 515, 683
Hsp92II	CATG	4 cut(s)	115, 659, 696, 842
Kzo9I	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
LmnI	GCTCC	2 cut(s)	129, 687
Lsp1109I	GCAGC	2 cut(s)	807, 835
LweI	GCATC	2 cut(s)	478, 482
MaeIII	GTNAC	2 cut(s)	497, 751
MalI	GATC	6 cut(s)	220, 393, 575, 600, 782, 831
MboI	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
MboII	GAAGA	8 cut(s)	363, 369, 418, 562, 755, 787, 790, 824
MfeI	CAATTG	2 cut(s)	477, 492
MhlI	GDGCHC	2 cut(s)	126, 692
MlsI	TGGCCA	2 cut(s)	177, 852
MluCI	AATT	6 cut(s)	439, 477, 492, 536, 855, 862
MluNI	TGGCCA	2 cut(s)	177, 852
MlyI	GAGTC	1 cut(s)	305
Mox20I	TGGCCA	2 cut(s)	177, 852
MscI	TGGCCA	2 cut(s)	177, 852
MseI	TTAA	1 cut(s)	636
Msp20I	TGGCCA	2 cut(s)	177, 852
MspI	CCGG	2 cut(s)	612, 981
MspR9I	CCNGG	2 cut(s)	204, 805
MunI	CAATTG	2 cut(s)	477, 492
MvaI	CCWGG	2 cut(s)	204, 805
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	538, 858
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
NlaIII	CATG	4 cut(s)	115, 659, 696, 842
NlaIV	GGNNCC	1 cut(s)	607
PagI	TCATGA	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	371, 445
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	7 cut(s)	39, 42, 236, 239, 610, 822, 825
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	2 cut(s)	126, 692
Psp6I	CCWGG	2 cut(s)	202, 803
PspGI	CCWGG	2 cut(s)	202, 803
PspN4I	GGNNCC	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	825
RsaI	GTAC	2 cut(s)	194, 896
RsaNI	GTAC	2 cut(s)	193, 895
SacI	GAGCTC	2 cut(s)	126, 692
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	7 cut(s)	38, 41, 235, 238, 609, 821, 824
Sau3AI	GATC	6 cut(s)	218, 391, 573, 598, 780, 829
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	204, 805
SduI	GDGCHC	2 cut(s)	126, 692
SfaNI	GCATC	2 cut(s)	478, 482
SfcI	CTRYAG	2 cut(s)	821, 868
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	6 cut(s)	439, 477, 492, 536, 855, 862
SsiI	CCGC	8 cut(s)	35, 38, 41, 53, 234, 237, 609, 733
SspI	AATATT	1 cut(s)	962
SstI	GAGCTC	2 cut(s)	126, 692
StyD4I	CCNGG	2 cut(s)	202, 803
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	2 cut(s)	120, 741
TasI	AATT	6 cut(s)	439, 477, 492, 536, 855, 862
TauI	GCSGC	5 cut(s)	40, 43, 237, 240, 611
TfiI	GAWTC	2 cut(s)	371, 445
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	178, 528
TseI	GCWGC	2 cut(s)	820, 823
TspDTI	ATGAA	3 cut(s)	762, 824, 928
TspGWI	ACGGA	2 cut(s)	231, 969
TspRI	CASTG	2 cut(s)	178, 528
Van91I	CCANNNNNTGG	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.