Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

32766984 .. 32796976

Gene Structure 29993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGTTTTTGTTGCTCAAACGTTTGATAGTATTGGTTTGATTCCATTGGTTCAAGTTGAGGAAGAGAGCAATGATGATCTCATGGCTTCACTTGCTCCATCATTTGTAACTGATGATTGGCTTGAGATTGTTCAGGTTGAGAAGGAGGGCAGTAATGATAATCTCATGGCCTCAGTTGGTCAACCATTTGCTAGTGATGATCAGGTTCAAAAGCATGGGATTGGGCCAATTCCCGGCTTAAAACGATTGATACTTATTCTAACTAGAATTCGATGCAGGGTTAATTTTGAGTACTCATCAAACAAATGCATGGTAAAGAAACATTCAGAATTTAAGATGCTGCGAAGAATATACAGGACGAAGTTTGCTTATAATCAGTTGTCCAAGCTTAAGTGTCTTGAAATAGTTGATATGAAGGAGAAGGTTGTTGTTGATACAAAAGAACAACGTGATCCTATTGTGTCGGATGTTGAGGTTATCCTAAAGCTAATTTCATCTAAAGAGAGACAAATCAACAAGAGTACAAGACCCATCAACTCCATTAAGCCAAAAATGTACGTGGACAGTACTAGTGCTGCAGCTGCCTGCAACTTTGATCCCAGTACTAATAACCCCATGTCAGAATCAGCCCCAGAAGTTGTCCTCCACAGCCACAACACCACCACCACCTTTGCTCATGAAGAAAACTTGAGGAGGCTCTCCATGGAAGAAGAGCTCTCTAACTACCACCACAACGCTGCCATGGAAATTGAGCAGCAGCTTCAGAATGAGATGGATTTTGGCACCATGGACCAAAACACCACCACCAACCCTCATTTGGTTAACCCCTTTGACACCCACCAAGCCACGAACTGGGACACTACTAATGAAATGCAACAACAATTGCCACAAGGCCCAACACCTGACCTACTCAGCCTTTTCCACTTGCCCTCCTCCTCTTCTGTGCTCCCACACTCCTCCATTAACTTCCCCCATCCCAAGACCCCGGGAGGCTGTTTCCCGGGGTCTTTCGGGTATGAGGCTCTACCCGAGACTCCTTCTGGGGCGGCGGCCTCTTCGGTCATGTATGACCCAATGTTCCACCTGAACCAGCTGCCTCCTCAGCCGCAGCCGCCGCTGTTCAGGGAGCTGCTGCAGTCCCTGCCACATGGGTACAACTTGGGTGGGTCCAGAAATGGGTCGAGCTTGTTTAGCAATGGTGGGGATGAGGTGGACGATGGGAGTAGGCAGTTGTTTGAGAATGGGGTGCTGGAGTTTTCCAAGGAGATGAAGCCATTTGGAAGAGGAAGAGGTGGGAATAAAGGGACCAAGCACTTTGCAACTGAGCGCCAGAGGAGAGTCCAGCTCAATGACAAGTTTCATGCTTTGAGGGAATTGGTTCCAAACCCAACAAAGCCTGATCGAGCATCTGTAGTGGGAGATGCCATTGATTACATACAGGAGCTCAAGAGGACTGTGAGTGAGCTGAAACTGCTGGTGGAGAAGAAAAGGTGTGGGAGAGAGAGGAGCAAGAGGCACAAGACTGAGCAGGACATAGGTGCTGGAGACGATGATGAGAGCTGTAACATGAAGCCTCTTGGTGACCATGATCATGACCACTCCTACAACAATGGGTCTCTGAGGAGCTCATGGCTTCAAAGGAAGTCCAAAGACACCGAGGTGGACGTCCGGATCATCGATGATGAAGTCACCATCAAACTGGTCCAGAGGAAGAAGATCAATCTGTTGCTGTCTGTGTCCAAGCTTCTTGATGAGTTGCAGCTTGAACTTCATCATGCTGCTGGGGGACACATTGGGAATTCATACAGCTTCTTGTTCAACACCAAGATGTATGAAGGGTCTTCTTTGTATGCAAGTGCCATTGCCAACAAGCTCATTGAGACTCTGGATAGACAATATGCAGCAATTCCACCTACCAATAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

642

Amino Acids

72.17

Weight (kDa)

5.99

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	436 - 483	2.6e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AatII	GACGTC	1 cut(s)	1668
AccB1I	GGYRCC	1 cut(s)	782
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccIII	TCCGGA	1 cut(s)	1668
AciI	CCGC	5 cut(s)	1046, 1049, 1106, 1112, 1115
AclI	AACGTT	1 cut(s)	20
AclWI	GGATC	3 cut(s)	446, 590, 1679
AcsI	RAATTY	3 cut(s)	267, 329, 1798
AcuI	CTGAAG	1 cut(s)	746
AcyI	GRCGYC	1 cut(s)	1665
AfaI	GTAC	6 cut(s)	293, 523, 557, 568, 604, 1154
AfiI	CCNNNNNNNGG	4 cut(s)	233, 817, 852, 1176
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	53, 209, 401, 1637, 1766, 1819
AhlI	ACTAGT	1 cut(s)	569
AleI	CACNNNNGTG	1 cut(s)	1658
Alw21I	GWGCWC	4 cut(s)	717, 948, 1446, 1628
Alw26I	GTCTC	5 cut(s)	499, 1025, 1539, 1620, 1874
AlwI	GGATC	3 cut(s)	446, 590, 1679
AlwNI	CAGNNNCTG	1 cut(s)	1141
Ama87I	CYCGRG	3 cut(s)	985, 1000, 1028
Aor13HI	TCCGGA	1 cut(s)	1668
AoxI	GGCC	4 cut(s)	168, 224, 892, 1050
ApoI	RAATTY	3 cut(s)	267, 329, 1798
Asp700I	GAANNNNTTC	1 cut(s)	1377
AspLEI	GCGC	1 cut(s)	1329
AspS9I	GGNCC	6 cut(s)	224, 790, 893, 1167, 1305, 1702
AsuC2I	CCSGG	5 cut(s)	234, 986, 987, 1001, 1002
AsuHPI	GGTGA	2 cut(s)	1592, 1681
AvaI	CYCGRG	3 cut(s)	985, 1000, 1028
AvaII	GGWCC	4 cut(s)	790, 1167, 1305, 1702
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	3 cut(s)	717, 1446, 1628
BbsI	GAAGAC	1 cut(s)	1833
Bbv12I	GWGCWC	4 cut(s)	717, 948, 1446, 1628
BbvCI	CCTCAGC	1 cut(s)	1101
BccI	CCATC	6 cut(s)	106, 539, 766, 981, 1211, 1700
BclI	TGATCA	2 cut(s)	199, 1588
BcnI	CCSGG	5 cut(s)	234, 986, 987, 1001, 1002
BcoDI	GTCTC	5 cut(s)	499, 1025, 1539, 1620, 1874
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	3 cut(s)	192, 264, 570
BfmI	CTRYAG	3 cut(s)	576, 1133, 1410
BfoI	RGCGCY	1 cut(s)	1330
BfrI	CTTAAG	1 cut(s)	389
BmcAI	AGTACT	3 cut(s)	293, 568, 604
Bme1390I	CCNGG	5 cut(s)	234, 986, 987, 1001, 1002
Bme18I	GGWCC	4 cut(s)	790, 1167, 1305, 1702
BmeT110I	CYCGRG	3 cut(s)	985, 1000, 1028
BmgT120I	GGNCC	6 cut(s)	224, 790, 893, 1167, 1305, 1702
BmiI	GGNNCC	4 cut(s)	784, 1168, 1306, 1380
BmrFI	CCNGG	5 cut(s)	234, 986, 987, 1001, 1002
BmrI	ACTGGG	2 cut(s)	594, 862
BmsI	GCATC	4 cut(s)	263, 327, 1411, 1415
BmuI	ACTGGG	2 cut(s)	594, 862
BpiI	GAAGAC	1 cut(s)	1833
BplI	GAGNNNNNCTC	2 cut(s)	1329, 1361
BpmI	CTGGAG	2 cut(s)	1271, 1563
Bpu10I	CCTNAGC	1 cut(s)	1101
BpuEI	CTTGAG	3 cut(s)	143, 709, 1430
BpuMI	CCSGG	5 cut(s)	234, 986, 987, 1001, 1002
Bsa29I	ATCGAT	1 cut(s)	1677
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	1665
BsaI	GGTCTC	1 cut(s)	1620
BsaJI	CCNNGG	9 cut(s)	702, 741, 786, 984, 985, 1000, 1001, 1260, 1656
BsaWI	WCCGGW	1 cut(s)	1668
BsaXI	ACNNNNNCTCC	2 cut(s)	914, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 817, 852, 1176
Bse1I	ACTGG	3 cut(s)	600, 857, 1704
Bse3DI	GCAATG	3 cut(s)	76, 1201, 1860
BseAI	TCCGGA	1 cut(s)	1668
BseCI	ATCGAT	1 cut(s)	1677
BseDI	CCNNGG	9 cut(s)	702, 741, 786, 984, 985, 1000, 1001, 1260, 1656
BseGI	GGATG	3 cut(s)	472, 973, 1210
BseLI	CCNNNNNNNGG	4 cut(s)	233, 817, 852, 1176
BseMI	GCAATG	3 cut(s)	76, 1201, 1860
BseMII	CTCAG	6 cut(s)	186, 925, 1115, 1314, 1515, 1610
BseNI	ACTGG	3 cut(s)	600, 857, 1704
BseRI	GAGGAG	8 cut(s)	706, 922, 925, 946, 1089, 1348, 1519, 1636
BseYI	CCCAGC	1 cut(s)	1781
BshFI	GGCC	4 cut(s)	170, 226, 894, 1052
BshNI	GGYRCC	1 cut(s)	782
BshVI	ATCGAT	1 cut(s)	1677
BsiHKAI	GWGCWC	4 cut(s)	717, 948, 1446, 1628
BsiHKCI	CYCGRG	3 cut(s)	985, 1000, 1028
BsiSI	CCGG	4 cut(s)	234, 986, 1001, 1669
BslFI	GGGAC	4 cut(s)	869, 1123, 1318, 1800
BslI	CCNNNNNNNGG	4 cut(s)	233, 817, 852, 1176
BsmAI	GTCTC	5 cut(s)	499, 1025, 1539, 1620, 1874
BsmBI	CGTCTC	1 cut(s)	1539
BsmFI	GGGAC	4 cut(s)	869, 1123, 1318, 1800
BsnI	GGCC	4 cut(s)	170, 226, 894, 1052
Bso31I	GGTCTC	1 cut(s)	1620
BsoBI	CYCGRG	3 cut(s)	985, 1000, 1028
Bsp1286I	GDGCHC	4 cut(s)	717, 948, 1446, 1628
Bsp13I	TCCGGA	1 cut(s)	1668
Bsp143I	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
Bsp19I	CCATGG	3 cut(s)	702, 741, 786
BspACI	CCGC	5 cut(s)	1046, 1049, 1106, 1112, 1115
BspANI	GGCC	4 cut(s)	170, 226, 894, 1052
BspCNI	CTCAG	6 cut(s)	185, 924, 1114, 1315, 1516, 1611
BspDI	ATCGAT	1 cut(s)	1677
BspEI	TCCGGA	1 cut(s)	1668
BspHI	TCATGA	2 cut(s)	676, 1591
BspLI	GGNNCC	4 cut(s)	784, 1168, 1306, 1380
BspMAI	CTGCAG	2 cut(s)	580, 1137
BspPI	GGATC	3 cut(s)	446, 590, 1679
BspQI	GCTCTTC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	782
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	1620
BsrDI	GCAATG	3 cut(s)	76, 1201, 1860
BsrI	ACTGG	3 cut(s)	600, 857, 1704
BssECI	CCNNGG	9 cut(s)	702, 741, 786, 984, 985, 1000, 1001, 1260, 1656
BssMI	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
BssNI	GRCGYC	1 cut(s)	1665
BssT1I	CCWWGG	4 cut(s)	702, 741, 786, 1260
Bst4CI	ACNGT	2 cut(s)	566, 1456
Bst6I	CTCTTC	6 cut(s)	57, 705, 943, 1060, 1276, 1282
BstACI	GRCGYC	1 cut(s)	1665
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	1141
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	6 cut(s)	172, 911, 1101, 1323, 1524, 1619
BstDSI	CCRYGG	3 cut(s)	702, 741, 786
BstEII	GGTNACC	1 cut(s)	1580
BstF5I	GGATG	3 cut(s)	472, 973, 1210
BstH2I	RGCGCY	1 cut(s)	1330
BstHHI	GCGC	1 cut(s)	1329
BstKTI	GATC	8 cut(s)	79, 202, 454, 598, 1402, 1591, 1674, 1719
BstMAI	GTCTC	5 cut(s)	499, 1025, 1539, 1620, 1874
BstMBI	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 581, 1102, 1111, 1114, 1141, 1191, 1471
BstPI	GGTNACC	1 cut(s)	1580
BstSCI	CCNGG	5 cut(s)	232, 984, 985, 999, 1000
BstSFI	CTRYAG	3 cut(s)	576, 1133, 1410
BstV2I	GAAGAC	1 cut(s)	1833
BstXI	CCANNNNNNTGG	1 cut(s)	1699
Bsu15I	ATCGAT	1 cut(s)	1677
BsuRI	GGCC	4 cut(s)	170, 226, 894, 1052
BsuTUI	ATCGAT	1 cut(s)	1677
BtgI	CCRYGG	3 cut(s)	702, 741, 786
BtsCI	GGATG	3 cut(s)	472, 973, 1210
Cac8I	GCNNGC	1 cut(s)	586
CaiI	CAGNNNCTG	1 cut(s)	1141
CciI	TCATGA	2 cut(s)	676, 1591
CfoI	GCGC	1 cut(s)	1329
Cfr13I	GGNCC	6 cut(s)	224, 790, 893, 1167, 1305, 1702
Cfr9I	CCCGGG	2 cut(s)	985, 1000
ClaI	ATCGAT	1 cut(s)	1677
Csp6I	GTAC	6 cut(s)	292, 522, 556, 567, 603, 1153
CspCI	CAANNNNNGTGG	4 cut(s)	652, 687, 1144, 1179
CviQI	GTAC	6 cut(s)	292, 522, 556, 567, 603, 1153
DdeI	CTNAG	6 cut(s)	172, 911, 1101, 1323, 1524, 1619
DpnI	GATC	8 cut(s)	78, 201, 453, 597, 1401, 1590, 1673, 1718
DpnII	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
Eam1104I	CTCTTC	6 cut(s)	57, 705, 943, 1060, 1276, 1282
EarI	CTCTTC	6 cut(s)	57, 705, 943, 1060, 1276, 1282
Ecl136II	GAGCTC	3 cut(s)	715, 1444, 1626
Eco130I	CCWWGG	4 cut(s)	702, 741, 786, 1260
Eco24I	GRGCYC	3 cut(s)	717, 1446, 1628
Eco31I	GGTCTC	1 cut(s)	1620
Eco47I	GGWCC	4 cut(s)	790, 1167, 1305, 1702
Eco53kI	GAGCTC	3 cut(s)	715, 1444, 1626
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	3 cut(s)	985, 1000, 1028
Eco91I	GGTNACC	1 cut(s)	1580
EcoICRI	GAGCTC	3 cut(s)	715, 1444, 1626
EcoO65I	GGTNACC	1 cut(s)	1580
EcoRI	GAATTC	2 cut(s)	267, 1798
EcoT14I	CCWWGG	4 cut(s)	702, 741, 786, 1260
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	3 cut(s)	717, 1446, 1628
ErhI	CCWWGG	4 cut(s)	702, 741, 786, 1260
Esp3I	CGTCTC	1 cut(s)	1539
FaqI	GGGAC	4 cut(s)	869, 1123, 1318, 1800
FbaI	TGATCA	2 cut(s)	199, 1588
FokI	GGATG	3 cut(s)	479, 960, 1217
FriOI	GRGCYC	3 cut(s)	717, 1446, 1628
FspBI	CTAG	3 cut(s)	192, 264, 570
GlaI	GCGC	1 cut(s)	1328
GsaI	CCCAGC	1 cut(s)	1785
GsuI	CTGGAG	2 cut(s)	1271, 1563
HaeII	RGCGCY	1 cut(s)	1330
HaeIII	GGCC	4 cut(s)	170, 226, 894, 1052
HapII	CCGG	4 cut(s)	234, 986, 1001, 1669
HhaI	GCGC	1 cut(s)	1329
Hin1I	GRCGYC	1 cut(s)	1665
Hin6I	GCGC	1 cut(s)	1327
HinP1I	GCGC	1 cut(s)	1327
HincII	GTYRAC	2 cut(s)	182, 823
HindII	GTYRAC	2 cut(s)	182, 823
HindIII	AAGCTT	2 cut(s)	386, 1742
HinfI	GANTC	5 cut(s)	40, 623, 1033, 1338, 1882
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	4 cut(s)	234, 986, 1001, 1669
HphI	GGTGA	2 cut(s)	1592, 1681
Hpy166II	GTNNAC	5 cut(s)	182, 562, 823, 1213, 1663
Hpy188I	TCNGA	5 cut(s)	328, 466, 622, 765, 1620
Hpy188III	TCNNGA	9 cut(s)	398, 677, 1170, 1447, 1592, 1669, 1705, 1748, 1886
Hpy8I	GTNNAC	5 cut(s)	182, 562, 823, 1213, 1663
HpyAV	CCTTC	5 cut(s)	136, 409, 415, 1047, 1829
HpyCH4III	ACNGT	2 cut(s)	566, 1456
HpyCH4IV	ACGT	4 cut(s)	20, 448, 558, 1665
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 581, 1102, 1111, 1114, 1141, 1191, 1471
HpyF3I	CTNAG	6 cut(s)	172, 911, 1101, 1323, 1524, 1619
HpySE526I	ACGT	4 cut(s)	20, 448, 558, 1665
Hsp92I	GRCGYC	1 cut(s)	1665
HspAI	GCGC	1 cut(s)	1327
Kpn2I	TCCGGA	1 cut(s)	1668
Ksp22I	TGATCA	2 cut(s)	199, 1588
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	6 cut(s)	100, 951, 1126, 1441, 1506, 1623
LweI	GCATC	4 cut(s)	263, 327, 1411, 1415
MaeI	CTAG	3 cut(s)	192, 264, 570
MaeII	ACGT	4 cut(s)	20, 448, 558, 1665
MaeIII	GTNAC	4 cut(s)	106, 1562, 1580, 1687
MalI	GATC	8 cut(s)	78, 201, 453, 597, 1401, 1590, 1673, 1718
MboI	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
MfeI	CAATTG	1 cut(s)	881
MhlI	GDGCHC	4 cut(s)	717, 948, 1446, 1628
MlyI	GAGTC	3 cut(s)	1027, 1347, 1876
MmeI	TCCRAC	1 cut(s)	444
Mph1103I	ATGCAT	1 cut(s)	311
MroI	TCCGGA	1 cut(s)	1668
MroXI	GAANNNNTTC	1 cut(s)	1377
MseI	TTAA	7 cut(s)	239, 282, 333, 390, 543, 822, 963
MslI	CAYNNNNRTG	3 cut(s)	1590, 1658, 1826
MspA1I	CMGCKG	3 cut(s)	581, 1093, 1117
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	4 cut(s)	234, 986, 1001, 1669
MspR9I	CCNGG	5 cut(s)	234, 986, 987, 1001, 1002
MunI	CAATTG	1 cut(s)	881
MwoI	GCNNNNNNNGC	8 cut(s)	92, 581, 1102, 1111, 1114, 1141, 1191, 1471
NciI	CCSGG	5 cut(s)	234, 986, 987, 1001, 1002
NcoI	CCATGG	3 cut(s)	702, 741, 786
NdeII	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
NlaIV	GGNNCC	4 cut(s)	784, 1168, 1306, 1380
NmuCI	GTSAC	2 cut(s)	1580, 1687
NsiI	ATGCAT	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	1658
PagI	TCATGA	2 cut(s)	676, 1591
PciSI	GCTCTTC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	1377
PfeI	GAWTC	2 cut(s)	40, 623
PflMI	CCANNNNNTGG	1 cut(s)	852
PleI	GAGTC	3 cut(s)	1027, 1346, 1876
PpsI	GAGTC	3 cut(s)	1027, 1346, 1876
Ppu21I	YACGTR	1 cut(s)	559
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	3 cut(s)	717, 1446, 1628
Psp1406I	AACGTT	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	1580
PspFI	CCCAGC	1 cut(s)	1781
PspN4I	GGNNCC	4 cut(s)	784, 1168, 1306, 1380
PspPI	GGNCC	6 cut(s)	224, 790, 893, 1167, 1305, 1702
PstI	CTGCAG	2 cut(s)	580, 1137
PstNI	CAGNNNCTG	1 cut(s)	1141
PvuII	CAGCTG	2 cut(s)	581, 1093
RsaI	GTAC	6 cut(s)	293, 523, 557, 568, 604, 1154
RsaNI	GTAC	6 cut(s)	292, 522, 556, 567, 603, 1153
RseI	CAYNNNNRTG	3 cut(s)	1590, 1658, 1826
SacI	GAGCTC	3 cut(s)	717, 1446, 1628
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	7 cut(s)	239, 282, 333, 390, 543, 822, 963
Sau3AI	GATC	8 cut(s)	76, 199, 451, 595, 1399, 1588, 1671, 1716
Sau96I	GGNCC	6 cut(s)	224, 790, 893, 1167, 1305, 1702
ScaI	AGTACT	3 cut(s)	293, 568, 604
SchI	GAGTC	3 cut(s)	1027, 1347, 1876
ScrFI	CCNGG	5 cut(s)	234, 986, 987, 1001, 1002
SduI	GDGCHC	4 cut(s)	717, 948, 1446, 1628
SfaNI	GCATC	4 cut(s)	263, 327, 1411, 1415
SfcI	CTRYAG	3 cut(s)	576, 1133, 1410
SinI	GGWCC	4 cut(s)	790, 1167, 1305, 1702
SmaI	CCCGGG	2 cut(s)	987, 1002
SmiMI	CAYNNNNRTG	3 cut(s)	1590, 1658, 1826
SmlI	CTYRAG	4 cut(s)	122, 389, 688, 1445
SmoI	CTYRAG	4 cut(s)	122, 389, 688, 1445
SpeI	ACTAGT	1 cut(s)	569
SsiI	CCGC	5 cut(s)	1046, 1049, 1106, 1112, 1115
SspMI	CTAG	3 cut(s)	192, 264, 570
SstI	GAGCTC	3 cut(s)	717, 1446, 1628
StyD4I	CCNGG	5 cut(s)	232, 984, 985, 999, 1000
StyI	CCWWGG	4 cut(s)	702, 741, 786, 1260
TaaI	ACNGT	2 cut(s)	566, 1456
TaiI	ACGT	4 cut(s)	23, 451, 561, 1668
TaqI	TCGA	4 cut(s)	271, 1181, 1402, 1677
TaqII	GACCGA	1 cut(s)	1048
TatI	WGTACW	4 cut(s)	291, 521, 566, 602
TauI	GCSGC	5 cut(s)	1049, 1052, 1108, 1114, 1117
TfiI	GAWTC	2 cut(s)	40, 623
Tru1I	TTAA	7 cut(s)	239, 282, 333, 390, 543, 822, 963
Tru9I	TTAA	7 cut(s)	239, 282, 333, 390, 543, 822, 963
TseFI	GTSAC	2 cut(s)	1580, 1687
Tsp45I	GTSAC	2 cut(s)	1580, 1687
TspMI	CCCGGG	2 cut(s)	985, 1000
Van91I	CCANNNNNTGG	1 cut(s)	852
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	4 cut(s)	790, 1167, 1305, 1702
XapI	RAATTY	3 cut(s)	267, 329, 1798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmaI	CCCGGG	2 cut(s)	985, 1000
XmnI	GAANNNNTTC	1 cut(s)	1377
XspI	CTAG	3 cut(s)	192, 264, 570
ZraI	GACGTC	1 cut(s)	1666
ZrmI	AGTACT	3 cut(s)	293, 568, 604
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.