MD02G1240400.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
28887314 .. 28888963
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1240400.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGGAAGAGCTTTCTTTTCATCACCATCACCAAAATCATCATTCCTCCGTGGAGATGGAGCTCCAGAACGAACTTGGGTTCAATGTCGATAACCCATACAACACCACCACTGACCATGACACCAACATCAACAATTCCCATTTGGTGTCCTTTGAGCACCCAACAAATTGGGACAACAACATTCACGGAGTCCATGATCAGATACAGCAACAATTCCCAGATGGTACTACTTCTACTCCATACCCACAACCGCCTGACCTTCTCAACCTTTTCAGCTTACCCAGATGCTCTCCCTCCTCTCTTCTTCAAAACTCATCCATCACCTTCACAAACACGCTCCCAAAAACCTCGACCTCTTTTGGGTTCCTCGGAGACCTGCCCAGCGCGGTTGACACCCCACTGGGGACGGCTTCTTCCGTTCTCTATGACCCACTTTTGCATTTGAACCTGCCTCCACAGCCGCCAATGTTCAGGGAACTGCTTCAGTCTTTGCCACATGGGTACACCTTGCCTGGCTCCGGAAATGGGTCTTTGTTCAGTAGCGGTGGCGATGAGAGGGAAGGGAGCGGAGGAGGGATTTACCCAGATCATGGCACTATTAATGGGTCTATATTTGAGAATGGAGTGATGGAGTTCTCCAGAGAAATGGGTTCTATTGGAAGGGGAAGAAATCTCAAAGGGTCCAAACACCTTGCCATTGATCGCGGTCGAAGACAGCAGTTGAATGACAAGTTCTTTACCTTGAGGAGTTTGATTCCCAACCCCACTAAGAATGATAGAGCGTCAATTGTGGGAGATGCGATTGGTTACATAAACGAGCTTCTGAGGACAGTGGACGAGCTCAAATTGTTGGTGGAGAAGAAAAGGTGTGGGACAGAGAGGAGCAAGAGGCACAAGACGGAACAAGATGGCGGTGCCGGAGATGAGAACTGTAATGCGAAGTCTGAGCCTCATGACCAGTCCTACAACAACGGCTCTCTGAGGAGCTCGTGGCTGCAAAGGAAATCCAAAGACACCGAGGTTGATATCCGCATTATCCATGATGAGGTTACCATCAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTCTGTGTCCAGGCTTCTTGATGAGCTGCAGCTTGATCTTCATCATGTTGCTGGTGGCCACATTGGCAATTCCTACAGCTTCTTGTTCAATACCAAGATGTATGAAGGGTCTTGCTTGTATGCAAGTGCTATTGCTGGCAAGTTCATTGAGGTTCTGGACAGACAATATTCAGCAGTTCCACCTACCAGCAGTTATTAG

Protein Analysis

430

Amino Acids

47.71

Weight (kDa)

6.01

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 228 - 274 9.9e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 384, 456
AccB1I GGYRCC 1 cut(s) 914
AccB7I CCANNNNNTGG 1 cut(s) 590
AccBSI CCGCTC 1 cut(s) 567
AccII CGCG 2 cut(s) 386, 705
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 8 cut(s) 251, 386, 461, 543, 567, 705, 912, 1030
AcoI YGGCCR 1 cut(s) 1147
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 2 cut(s) 226, 503
AfiI CCNNNNNNNGG 6 cut(s) 360, 402, 518, 525, 590, 1045
AgsI TTSAA 5 cut(s) 82, 308, 445, 724, 1180
AjnI CCWGG 2 cut(s) 511, 1100
AluBI AGCT 9 cut(s) 10, 61, 276, 820, 841, 987, 1117, 1123, 1170
AluI AGCT 9 cut(s) 10, 61, 276, 820, 841, 987, 1117, 1123, 1170
Alw21I GWGCWC 4 cut(s) 63, 159, 843, 989
Alw26I GTCTC 1 cut(s) 366
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 1 cut(s) 1147
ApeKI GCWGC 3 cut(s) 994, 1117, 1120
AseI ATTAAT 1 cut(s) 600
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 681
AsuHPI GGTGA 3 cut(s) 14, 20, 313
AvaII GGWCC 1 cut(s) 681
BalI TGGCCA 1 cut(s) 1149
BanI GGYRCC 1 cut(s) 914
BanII GRGCYC 3 cut(s) 63, 843, 989
BauI CACGAG 1 cut(s) 988
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 4 cut(s) 63, 159, 843, 989
BbvI GCAGC 3 cut(s) 981, 1104, 1132
BccI CCATC 7 cut(s) 33, 49, 215, 326, 622, 902, 1061
BceAI ACGGC 2 cut(s) 423, 988
BciT130I CCWGG 2 cut(s) 513, 1102
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 1118, 1165
BfuAI ACCTGC 2 cut(s) 384, 456
BglI GCCNNNNNGGC 1 cut(s) 1155
BisI GCNGC 4 cut(s) 461, 995, 1118, 1121
BlsI GCNGC 4 cut(s) 462, 996, 1119, 1122
Bme1390I CCNGG 2 cut(s) 513, 1102
Bme18I GGWCC 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 4 cut(s) 365, 517, 682, 916
BmrFI CCNGG 2 cut(s) 513, 1102
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 275, 787
BmuI ACTGGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 718
BpmI CTGGAG 2 cut(s) 47, 622
BpuEI CTTGAG 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 1131
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 48, 367, 1017
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 6 cut(s) 360, 402, 518, 525, 590, 1045
Bse1I ACTGG 3 cut(s) 405, 958, 1065
Bse8I GATNNNNATC 1 cut(s) 1131
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 2 cut(s) 513, 1102
BseDI CCNNGG 3 cut(s) 48, 367, 1017
BseGI GGATG 1 cut(s) 314
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 6 cut(s) 360, 402, 518, 525, 590, 1045
BseMII CTCAG 3 cut(s) 815, 936, 971
BseNI ACTGG 3 cut(s) 405, 958, 1065
BseRI GAGGAG 5 cut(s) 286, 585, 760, 895, 997
BseXI GCAGC 3 cut(s) 981, 1104, 1132
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 1085
Bsh1236I CGCG 2 cut(s) 386, 705
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 1 cut(s) 1149
BshNI GGYRCC 1 cut(s) 914
BsiEI CGRYCG 1 cut(s) 709
BsiHKAI GWGCWC 4 cut(s) 63, 159, 843, 989
BsiSI CCGG 2 cut(s) 519, 918
BslFI GGGAC 3 cut(s) 185, 418, 886
BslI CCNNNNNNNGG 6 cut(s) 360, 402, 518, 525, 590, 1045
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 3 cut(s) 185, 418, 886
BsnI GGCC 1 cut(s) 1149
Bso31I GGTCTC 1 cut(s) 366
Bsp1286I GDGCHC 4 cut(s) 63, 159, 843, 989
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 5 cut(s) 196, 586, 700, 1077, 1126
BspACI CCGC 8 cut(s) 251, 386, 461, 543, 567, 705, 912, 1030
BspANI GGCC 1 cut(s) 1149
BspCNI CTCAG 3 cut(s) 816, 937, 972
BspEI TCCGGA 1 cut(s) 518
BspFNI CGCG 2 cut(s) 386, 705
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 4 cut(s) 365, 517, 682, 916
BspMAI CTGCAG 1 cut(s) 1122
BspMI ACCTGC 2 cut(s) 384, 456
BspT107I GGYRCC 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 567
BsrI ACTGG 3 cut(s) 405, 958, 1065
BssECI CCNNGG 3 cut(s) 48, 367, 1017
BssMI GATC 5 cut(s) 196, 586, 700, 1077, 1126
BssSI CACGAG 1 cut(s) 988
Bst2BI CACGAG 1 cut(s) 988
Bst2UI CCWGG 2 cut(s) 513, 1102
Bst4CI ACNGT 2 cut(s) 832, 932
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 1228
BstDEI CTNAG 4 cut(s) 768, 824, 945, 980
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 1048
BstF5I GGATG 1 cut(s) 314
BstFNI CGCG 2 cut(s) 386, 705
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 5 cut(s) 199, 589, 703, 1080, 1129
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 5 cut(s) 196, 586, 700, 1077, 1126
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 2 cut(s) 457, 1155
BstNI CCWGG 2 cut(s) 513, 1102
BstPI GGTNACC 1 cut(s) 1048
BstSCI CCNGG 2 cut(s) 511, 1100
BstSFI CTRYAG 2 cut(s) 1118, 1165
BstUI CGCG 2 cut(s) 386, 705
BstV1I GCAGC 3 cut(s) 981, 1104, 1132
BstV2I GAAGAC 1 cut(s) 718
BstXI CCANNNNNNTGG 3 cut(s) 168, 646, 1060
BsuRI GGCC 1 cut(s) 1149
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 3 cut(s) 108, 398, 837
BveI ACCTGC 2 cut(s) 384, 456
Cac8I GCNNGC 1 cut(s) 1228
CciI TCATGA 1 cut(s) 952
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 681
CseI GACGC 1 cut(s) 771
Csp6I GTAC 2 cut(s) 225, 502
CviAII CATG 7 cut(s) 116, 194, 497, 590, 953, 1040, 1136
CviQI GTAC 2 cut(s) 225, 502
DdeI CTNAG 4 cut(s) 768, 824, 945, 980
DpnI GATC 5 cut(s) 198, 588, 702, 1079, 1128
DpnII GATC 5 cut(s) 196, 586, 700, 1077, 1126
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 3 cut(s) 61, 841, 987
Eco24I GRGCYC 3 cut(s) 63, 843, 989
Eco31I GGTCTC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 681
Eco53kI GAGCTC 3 cut(s) 61, 841, 987
Eco57I CTGAAG 1 cut(s) 467
Eco91I GGTNACC 1 cut(s) 1048
EcoICRI GAGCTC 3 cut(s) 61, 841, 987
EcoO65I GGTNACC 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 511, 1100
EcoRV GATATC 1 cut(s) 1027
EcoT38I GRGCYC 3 cut(s) 63, 843, 989
FaeI CATG 7 cut(s) 119, 197, 500, 593, 956, 1043, 1139
FaqI GGGAC 3 cut(s) 185, 418, 886
FatI CATG 7 cut(s) 115, 193, 496, 589, 952, 1039, 1135
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 461, 995, 1118, 1121
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 3 cut(s) 63, 843, 989
Fsp4HI GCNGC 4 cut(s) 461, 995, 1118, 1121
GlaI GCGC 1 cut(s) 385
GluI GCNGC 4 cut(s) 461, 995, 1118, 1121
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 2 cut(s) 47, 622
HaeIII GGCC 1 cut(s) 1149
HapII CCGG 2 cut(s) 519, 918
HgaI GACGC 1 cut(s) 771
HhaI GCGC 1 cut(s) 386
Hin1II CATG 7 cut(s) 119, 197, 500, 593, 956, 1043, 1139
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 189, 754
HpaII CCGG 2 cut(s) 519, 918
HphI GGTGA 3 cut(s) 14, 20, 313
Hpy166II GTNNAC 3 cut(s) 391, 504, 835
Hpy188I TCNGA 5 cut(s) 201, 371, 825, 946, 981
Hpy188III TCNNGA 6 cut(s) 64, 519, 639, 953, 1109, 1247
Hpy8I GTNNAC 3 cut(s) 391, 504, 835
HpyAV CCTTC 5 cut(s) 269, 334, 554, 654, 1190
HpyCH4III ACNGT 2 cut(s) 832, 932
HpyCH4V TGCA 5 cut(s) 439, 997, 1066, 1120, 1214
HpyF10VI GCNNNNNNNGC 2 cut(s) 457, 1155
HpyF3I CTNAG 4 cut(s) 768, 824, 945, 980
Hsp92II CATG 7 cut(s) 119, 197, 500, 593, 956, 1043, 1139
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 196, 586, 700, 1077, 1126
LmnI GCTCC 7 cut(s) 58, 66, 342, 521, 564, 882, 984
Lsp1109I GCAGC 3 cut(s) 981, 1104, 1132
LweI GCATC 2 cut(s) 275, 787
MaeIII GTNAC 2 cut(s) 806, 1048
MalI GATC 5 cut(s) 198, 588, 702, 1079, 1128
MbiI CCGCTC 1 cut(s) 567
MboI GATC 5 cut(s) 196, 586, 700, 1077, 1126
MfeI CAATTG 1 cut(s) 786
MhlI GDGCHC 4 cut(s) 63, 159, 843, 989
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 6 cut(s) 133, 166, 212, 786, 845, 1159
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 1 cut(s) 198
Mox20I TGGCCA 1 cut(s) 1149
MroI TCCGGA 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 480
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 1149
MspI CCGG 2 cut(s) 519, 918
MspR9I CCNGG 2 cut(s) 513, 1102
MunI CAATTG 1 cut(s) 786
MvaI CCWGG 2 cut(s) 513, 1102
MvnI CGCG 2 cut(s) 386, 705
MwoI GCNNNNNNNGC 2 cut(s) 457, 1155
NdeII GATC 5 cut(s) 196, 586, 700, 1077, 1126
NlaIII CATG 7 cut(s) 119, 197, 500, 593, 956, 1043, 1139
NlaIV GGNNCC 4 cut(s) 365, 517, 682, 916
PagI TCATGA 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 4 cut(s) 462, 996, 1119, 1122
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 600
Psp124BI GAGCTC 3 cut(s) 63, 843, 989
Psp6I CCWGG 2 cut(s) 511, 1100
PspEI GGTNACC 1 cut(s) 1048
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 2 cut(s) 511, 1100
PspN4I GGNNCC 4 cut(s) 365, 517, 682, 916
PspPI GGNCC 1 cut(s) 681
PstI CTGCAG 1 cut(s) 1122
RsaI GTAC 2 cut(s) 226, 503
RsaNI GTAC 2 cut(s) 225, 502
SacI GAGCTC 3 cut(s) 63, 843, 989
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 4 cut(s) 461, 995, 1118, 1121
Sau3AI GATC 5 cut(s) 196, 586, 700, 1077, 1126
Sau96I GGNCC 1 cut(s) 681
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 513, 1102
SduI GDGCHC 4 cut(s) 63, 159, 843, 989
SfaNI GCATC 2 cut(s) 275, 787
SfcI CTRYAG 2 cut(s) 1118, 1165
SinI GGWCC 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
Sse9I AATT 6 cut(s) 133, 166, 212, 786, 845, 1159
SsiI CCGC 8 cut(s) 251, 386, 461, 543, 567, 705, 912, 1030
SspI AATATT 1 cut(s) 1259
SstI GAGCTC 3 cut(s) 63, 843, 989
StyD4I CCNGG 2 cut(s) 511, 1100
TaaI ACNGT 2 cut(s) 832, 932
TaqI TCGA 3 cut(s) 87, 350, 709
TasI AATT 6 cut(s) 133, 166, 212, 786, 845, 1159
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 3 cut(s) 115, 405, 837
TseI GCWGC 3 cut(s) 994, 1117, 1120
TspDTI ATGAA 4 cut(s) 8, 1121, 1209, 1225
TspGWI ACGGA 4 cut(s) 37, 201, 406, 914
TspRI CASTG 3 cut(s) 115, 405, 837
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 681
VspI ATTAAT 1 cut(s) 600
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.