Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009742.1

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

43148 .. 43816

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009742.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgtttgggaaacttggggaacaattaattggagcaaagcctgatcgagcatctgtagtgggagatgccattgattacatacaggagctcaagaggactgtgagtgagctgaaactgctcgtggagaagaaaaggtgtgggagagagaggagcaagaggcacaagactgagcaggacataggtgctggagacgatgatgagagctgtaacatgaagcctcttggtgaccatgatcatgaccactcctacaacaatgggtctctgaggagctcatggcttcaaaggaagtccaaagacaccgaggtcgacgtccggatcattgatgatgaagtcaccatcaaactggtccagaggaagaagatcaatctgttgctgtctgtgtccaagcttcttgatgagttgcagcttgaacttcatcatgctgctgggggacacattgggaattcatacagcttcttgttcaacaccaagatgtatgaagggtcttctttgtatgcaagtgccattgccaacaagctcattgagactctggatagacaatatgcagcaattccacctaccaatagttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

190

Amino Acids

21.41

Weight (kDa)

6.66

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	312
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	281, 410, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	8 cut(s)	88, 109, 204, 270, 388, 406, 453, 517
AluI	AGCT	8 cut(s)	88, 109, 204, 270, 388, 406, 453, 517
Alw21I	GWGCWC	2 cut(s)	90, 272
Alw26I	GTCTC	3 cut(s)	183, 264, 518
AlwI	GGATC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	403, 422, 545
ApoI	RAATTY	1 cut(s)	442
AseI	ATTAAT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	236, 325
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	90, 272
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	90, 272
BbvI	GCAGC	3 cut(s)	409, 415, 557
BccI	CCATC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	183, 264, 518
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	404, 423, 546
BlsI	GCNGC	3 cut(s)	405, 424, 547
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmsI	GCATC	2 cut(s)	55, 59
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	159, 254
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	163, 280
BseXI	GCAGC	3 cut(s)	409, 415, 557
BseYI	CCCAGC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	90, 272
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	3 cut(s)	183, 264, 518
BsmBI	CGTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	2 cut(s)	90, 272
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	43, 232, 315, 360
BspCNI	CTCAG	2 cut(s)	160, 255
BspEI	TCCGGA	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	235
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	43, 232, 315, 360
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	168, 263
BstEII	GGTNACC	1 cut(s)	224
BstKTI	GATC	4 cut(s)	46, 235, 318, 363
BstMAI	GTCTC	3 cut(s)	183, 264, 518
BstMBI	GATC	4 cut(s)	43, 232, 315, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	409, 415, 557
BstV2I	GAAGAC	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	343
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	5 cut(s)	211, 230, 236, 273, 419
DdeI	CTNAG	2 cut(s)	168, 263
DpnI	GATC	4 cut(s)	45, 234, 317, 362
DpnII	GATC	4 cut(s)	43, 232, 315, 360
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Ecl136II	GAGCTC	2 cut(s)	88, 270
Eco24I	GRGCYC	2 cut(s)	90, 272
Eco31I	GGTCTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	2 cut(s)	88, 270
Eco91I	GGTNACC	1 cut(s)	224
EcoICRI	GAGCTC	2 cut(s)	88, 270
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	90, 272
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	5 cut(s)	214, 233, 239, 276, 422
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	210, 229, 235, 272, 418
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	404, 423, 546
FriOI	GRGCYC	2 cut(s)	90, 272
Fsp4HI	GCNGC	3 cut(s)	404, 423, 546
GluI	GCNGC	3 cut(s)	404, 423, 546
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	207
HapII	CCGG	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	5 cut(s)	214, 233, 239, 276, 422
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	526
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	2 cut(s)	236, 325
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	6 cut(s)	91, 236, 313, 349, 392, 530
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	403, 497, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	168, 263
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	214, 233, 239, 276, 422
Kpn2I	TCCGGA	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	43, 232, 315, 360
LmnI	GCTCC	4 cut(s)	32, 85, 150, 267
LpnPI	CCDG	9 cut(s)	54, 68, 158, 171, 326, 329, 362, 411, 515
Lsp1109I	GCAGC	3 cut(s)	409, 415, 557
LweI	GCATC	2 cut(s)	55, 59
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	206, 224, 331
MalI	GATC	4 cut(s)	45, 234, 317, 362
MboI	GATC	4 cut(s)	43, 232, 315, 360
MboII	GAAGA	4 cut(s)	139, 367, 370, 477
MhlI	GDGCHC	2 cut(s)	90, 272
MluCI	AATT	4 cut(s)	23, 27, 442, 549
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	7 cut(s)	87, 141, 150, 228, 258, 295, 345
MroI	TCCGGA	1 cut(s)	312
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	234, 470
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	4 cut(s)	43, 232, 315, 360
NlaIII	CATG	5 cut(s)	214, 233, 239, 276, 422
NmuCI	GTSAC	2 cut(s)	224, 331
PagI	TCATGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	405, 424, 547
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	26
Psp124BI	GAGCTC	2 cut(s)	90, 272
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	234, 470
SacI	GAGCTC	2 cut(s)	90, 272
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	404, 423, 546
Sau3AI	GATC	4 cut(s)	43, 232, 315, 360
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	90, 272
SfaNI	GCATC	2 cut(s)	55, 59
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	234, 470
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	23, 27, 442, 549
SstI	GAGCTC	2 cut(s)	90, 272
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	46, 306
TasI	AATT	4 cut(s)	23, 27, 442, 549
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	2 cut(s)	224, 331
TseI	GCWGC	3 cut(s)	403, 422, 545
Tsp45I	GTSAC	2 cut(s)	224, 331
TspDTI	ATGAA	5 cut(s)	227, 342, 404, 435, 492
VpaK11BI	GGWCC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.