MD02G1240500.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
28910157 .. 28912371
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1240500.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGTATCAAGACACAGTAGCATGCAACTTTGACCCAAACTCCATCCCTGAATCTGCAGCAGAGAGCGTGCTCGACCTCAACCCTCTTCCCCCACAACCACTGCCACAACAACCACCACAAGTTCTCATGCCTTCTTCAGACACCACCCACCACCACAACACCACCACCACCGGCTTTGGTGTCGAAGCAAACACCAGACTCTCCATGGAAGAGCTTTCTTATCATCCTCACCATCACCAATATCATCATTCCTCCATGGAAATCGATCTCCAAAACGAACTTGGGTTCAATGTCGATGACTCATACACCACCAATACTGACCATAACAACAACATCAACAATTCCCATTTGGTGTCTTTTGAGCACCCAACAAATTGGGACACCACCAATATTCATGGCGTTCATGATCAGATGCAGCAACAATTCCCAGATGGTACTACTTCTGCTACTTGTACTCTATACCCACAACCACCTGACCTTCTCAACCTTTTCAGCTTACCCAGATGCTCCCCCTCCTCTCTTCTCCAAAGTTCATCCATCACCTTCACAAATCCCCTCCCAAAAACCTCGAATTTTCCGAGCTCTTTCGGGCTCCTTGGAGACCTCCCCACCGCGGTTGACACCCCACAGGGGACGGCTTCTTCCGTCCTCTATGACCCGCTTCTCCACTTGAACCTCCCTCCACAGCCGCCATTATTCAGGGAGTTGCTTCAGTCCCTGCCGCATGGGTACACCTTGCCTGGCTCAGGAAACGGGTCGTTGTTCAGTAGCGGCGGCGATGACAGAGAGGGAAGCGGAGGAGGAGTTCTGTATGACCCAGATAGGAGTCTTGGGAGGCAGTTTGATAGCGGAGTTTTGGAGTTCTCAAGAGATATGGCTTCTAATGGGATAGGAAGAGATCTCAAAAGGACCAAACACTTCGCTACCGAGCGCCAAAGGAGACAGCAATTGAATGGCAAGTTCGATATCTTGAAGGATTTGGTTCCAAACCCAACAAAGAATGATAGAGCATCAATTGTGGGAGATGCAATTGAATACATAAACGAGCTTCTGAGGACAGTGGAAGAGCTTAAATTGCTGGTCGAGAAGAACAGGTGTGGGAGAGAAAGGATCAAGAGGTACAAGACTGAACATGATGGCGCTGCCGCCGCTGGAGATGACGAGAGCTGCAACATTCAGCCTCTTGGTGAGCCTCATGACCAGTCCTACAACAATGGCTCTCTGCGGAGCTCGTGGCTGCAAAGGAAATCCAAAGACACCGAGGTTGATATCCGCATTATCGACGATGAAGTTACCATTAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTTTGTGTCCAGGCTTCTGGATGAGCTGCAGCTTGATCTTCATCATGTTGCCGGTGGCCAAATTGGCAATTCCTACAGCTTCTTCTTCAATACCAAGATGTATGAAGGGTCTTGTTTGTATGCAAGTGCAATAGCTGGGAAGCTCATTGAGGTTCTGGACAGACAATATGCAGCGGCAGTTCTTCCACCTACCAACAGTTAG

Protein Analysis

512

Amino Acids

56.77

Weight (kDa)

5.33

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 302 - 350 6.5e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 614
AclWI GGATC 1 cut(s) 1118
AcoI YGGCCR 1 cut(s) 1390
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 2 cut(s) 120, 695
AfaI GTAC 4 cut(s) 436, 454, 731, 1121
AfiI CCNNNNNNNGG 3 cut(s) 613, 630, 746
AgsI TTSAA 6 cut(s) 289, 673, 952, 973, 1034, 1423
AjnI CCWGG 2 cut(s) 739, 1343
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
Alw21I GWGCWC 4 cut(s) 72, 366, 584, 1232
Alw26I GTCTC 2 cut(s) 594, 934
AlwI GGATC 1 cut(s) 1118
AlwNI CAGNNNCTG 1 cut(s) 718
AoxI GGCC 1 cut(s) 1390
ApeKI GCWGC 8 cut(s) 56, 415, 1142, 1167, 1237, 1360, 1363, 1505
ApoI RAATTY 1 cut(s) 571
AspLEI GCGC 2 cut(s) 933, 1142
AspS9I GGNCC 1 cut(s) 909
AsuHPI GGTGA 4 cut(s) 221, 227, 532, 1199
AvaII GGWCC 1 cut(s) 909
BalI TGGCCA 1 cut(s) 1392
BanII GRGCYC 3 cut(s) 584, 594, 1232
BauI CACGAG 1 cut(s) 1231
Bbv12I GWGCWC 4 cut(s) 72, 366, 584, 1232
BbvI GCAGC 8 cut(s) 68, 427, 1129, 1154, 1224, 1347, 1375, 1517
BccI CCATC 5 cut(s) 50, 240, 425, 545, 1130
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 2 cut(s) 741, 1345
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 594, 934
BfmI CTRYAG 3 cut(s) 54, 1361, 1408
BfoI RGCGCY 2 cut(s) 934, 1143
BglI GCCNNNNNGGC 1 cut(s) 1398
BglII AGATCT 1 cut(s) 898
Bme1390I CCNGG 2 cut(s) 741, 1345
Bme18I GGWCC 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 2 cut(s) 593, 984
BmrFI CCNGG 2 cut(s) 741, 1345
BmsI GCATC 4 cut(s) 402, 494, 1015, 1019
BpmI CTGGAG 1 cut(s) 1173
Bpu10I CCTNAGC 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 850
Bsa29I ATCGAT 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 1374
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 204, 255, 595, 612, 1260
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 789, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 613, 630, 746
Bse118I RCCGGY 2 cut(s) 170, 1385
Bse1I ACTGG 2 cut(s) 1201, 1308
Bse8I GATNNNNATC 1 cut(s) 1374
BseBI CCWGG 2 cut(s) 741, 1345
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 5 cut(s) 204, 255, 595, 612, 1260
BseGI GGATG 4 cut(s) 42, 223, 533, 1360
BseJI GATNNNNATC 1 cut(s) 1374
BseLI CCNNNNNNNGG 3 cut(s) 613, 630, 746
BseMII CTCAG 2 cut(s) 759, 1043
BseNI ACTGG 2 cut(s) 1201, 1308
BseRI GAGGAG 3 cut(s) 505, 813, 816
BseXI GCAGC 8 cut(s) 68, 427, 1129, 1154, 1224, 1347, 1375, 1517
BseYI CCCAGC 1 cut(s) 1469
BsgI GTGCAG 1 cut(s) 1328
Bsh1236I CGCG 1 cut(s) 614
BshFI GGCC 1 cut(s) 1392
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 4 cut(s) 72, 366, 584, 1232
BsiSI CCGG 2 cut(s) 171, 1386
BslFI GGGAC 3 cut(s) 392, 646, 700
BslI CCNNNNNNNGG 3 cut(s) 613, 630, 746
BsmAI GTCTC 2 cut(s) 594, 934
BsmFI GGGAC 3 cut(s) 392, 646, 700
BsnI GGCC 1 cut(s) 1392
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 5 cut(s) 72, 366, 584, 594, 1232
Bsp143I GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
Bsp19I CCATGG 2 cut(s) 204, 255
BspANI GGCC 1 cut(s) 1392
BspCNI CTCAG 2 cut(s) 758, 1044
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 2 cut(s) 403, 1195
BspLI GGNNCC 2 cut(s) 593, 984
BspMAI CTGCAG 2 cut(s) 58, 1365
BspPI GGATC 1 cut(s) 1118
BspQI GCTCTTC 2 cut(s) 204, 1059
BspTNI GGTCTC 1 cut(s) 594
BsrFI RCCGGY 2 cut(s) 170, 1385
BsrI ACTGG 2 cut(s) 1201, 1308
BssAI RCCGGY 2 cut(s) 170, 1385
BssECI CCNNGG 5 cut(s) 204, 255, 595, 612, 1260
BssMI GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
BssSI CACGAG 1 cut(s) 1231
BssT1I CCWWGG 3 cut(s) 204, 255, 595
Bst2BI CACGAG 1 cut(s) 1231
Bst2UI CCWGG 2 cut(s) 741, 1345
Bst4CI ACNGT 3 cut(s) 16, 1060, 1532
Bst6I CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
BstC8I GCNNGC 2 cut(s) 22, 68
BstDEI CTNAG 2 cut(s) 745, 1052
BstDSI CCRYGG 3 cut(s) 204, 255, 612
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 4 cut(s) 42, 223, 533, 1360
BstFNI CGCG 1 cut(s) 614
BstH2I RGCGCY 2 cut(s) 934, 1143
BstHHI GCGC 2 cut(s) 933, 1142
BstKTI GATC 6 cut(s) 268, 409, 901, 1113, 1323, 1372
BstMAI GTCTC 2 cut(s) 594, 934
BstMBI GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 1075, 1148, 1398
BstNI CCWGG 2 cut(s) 741, 1345
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 739, 1343
BstSFI CTRYAG 3 cut(s) 54, 1361, 1408
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 8 cut(s) 68, 427, 1129, 1154, 1224, 1347, 1375, 1517
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 3 cut(s) 375, 1303, 1351
BstYI RGATCY 1 cut(s) 898
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 1 cut(s) 1392
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 3 cut(s) 204, 255, 612
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 4 cut(s) 42, 223, 533, 1360
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 98, 1065
Cac8I GCNNGC 2 cut(s) 22, 68
CaiI CAGNNNCTG 1 cut(s) 718
CciI TCATGA 2 cut(s) 403, 1195
CfoI GCGC 2 cut(s) 933, 1142
Cfr10I RCCGGY 2 cut(s) 170, 1385
Cfr13I GGNCC 1 cut(s) 909
Cfr42I CCGCGG 1 cut(s) 615
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 4 cut(s) 435, 453, 730, 1120
CspCI CAANNNNNGTGG 4 cut(s) 157, 192, 598, 633
CviQI GTAC 4 cut(s) 435, 453, 730, 1120
DdeI CTNAG 2 cut(s) 745, 1052
DpnI GATC 6 cut(s) 267, 408, 900, 1112, 1322, 1371
DpnII GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
EaeI YGGCCR 1 cut(s) 1390
Eam1104I CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
EarI CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
Ecl136II GAGCTC 2 cut(s) 582, 1230
Eco130I CCWWGG 3 cut(s) 204, 255, 595
Eco24I GRGCYC 3 cut(s) 584, 594, 1232
Eco31I GGTCTC 1 cut(s) 594
Eco32I GATATC 2 cut(s) 967, 1270
Eco47I GGWCC 1 cut(s) 909
Eco53kI GAGCTC 2 cut(s) 582, 1230
Eco57I CTGAAG 2 cut(s) 120, 695
EcoICRI GAGCTC 2 cut(s) 582, 1230
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 739, 1343
EcoRV GATATC 2 cut(s) 967, 1270
EcoT14I CCWWGG 3 cut(s) 204, 255, 595
EcoT38I GRGCYC 3 cut(s) 584, 594, 1232
ErhI CCWWGG 3 cut(s) 204, 255, 595
FaqI GGGAC 3 cut(s) 392, 646, 700
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 406
FokI GGATG 4 cut(s) 29, 210, 520, 1367
FriOI GRGCYC 3 cut(s) 584, 594, 1232
GlaI GCGC 2 cut(s) 932, 1141
GsaI CCCAGC 1 cut(s) 1473
GsuI CTGGAG 1 cut(s) 1173
HaeII RGCGCY 2 cut(s) 934, 1143
HaeIII GGCC 1 cut(s) 1392
HapII CCGG 2 cut(s) 171, 1386
HhaI GCGC 2 cut(s) 933, 1142
Hin6I GCGC 2 cut(s) 931, 1140
HinP1I GCGC 2 cut(s) 931, 1140
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 4 cut(s) 50, 198, 299, 826
HpaII CCGG 2 cut(s) 171, 1386
HphI GGTGA 4 cut(s) 221, 227, 532, 1199
Hpy166II GTNNAC 2 cut(s) 619, 732
Hpy188I TCNGA 4 cut(s) 139, 411, 579, 1053
Hpy8I GTNNAC 2 cut(s) 619, 732
Hpy99I CGWCG 1 cut(s) 1286
HpyAV CCTTC 5 cut(s) 141, 488, 553, 967, 1433
HpyCH4III ACNGT 3 cut(s) 16, 1060, 1532
HpyF10VI GCNNNNNNNGC 3 cut(s) 1075, 1148, 1398
HpyF3I CTNAG 2 cut(s) 745, 1052
HspAI GCGC 2 cut(s) 931, 1140
Ksp22I TGATCA 1 cut(s) 406
KspI CCGCGG 1 cut(s) 615
Kzo9I GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
LguI GCTCTTC 2 cut(s) 204, 1059
LmnI GCTCC 3 cut(s) 512, 597, 1227
Lsp1109I GCAGC 8 cut(s) 68, 427, 1129, 1154, 1224, 1347, 1375, 1517
LweI GCATC 4 cut(s) 402, 494, 1015, 1019
MaeIII GTNAC 1 cut(s) 1291
MalI GATC 6 cut(s) 267, 408, 900, 1112, 1322, 1371
MboI GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
MfeI CAATTG 3 cut(s) 947, 1014, 1029
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 5 cut(s) 72, 366, 584, 594, 1232
MlsI TGGCCA 1 cut(s) 1392
MluNI TGGCCA 1 cut(s) 1392
MlyI GAGTC 3 cut(s) 192, 293, 835
Mox20I TGGCCA 1 cut(s) 1392
MscI TGGCCA 1 cut(s) 1392
MseI TTAA 2 cut(s) 1071, 1299
Msp20I TGGCCA 1 cut(s) 1392
MspA1I CMGCKG 3 cut(s) 614, 1151, 1508
MspI CCGG 2 cut(s) 171, 1386
MspR9I CCNGG 2 cut(s) 741, 1345
MunI CAATTG 3 cut(s) 947, 1014, 1029
MvaI CCWGG 2 cut(s) 741, 1345
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 1075, 1148, 1398
NcoI CCATGG 2 cut(s) 204, 255
NdeII GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
NlaIV GGNNCC 2 cut(s) 593, 984
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 2 cut(s) 403, 1195
PciSI GCTCTTC 2 cut(s) 204, 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 3 cut(s) 192, 293, 834
PpsI GAGTC 3 cut(s) 192, 293, 834
Psp124BI GAGCTC 2 cut(s) 584, 1232
Psp6I CCWGG 2 cut(s) 739, 1343
PspFI CCCAGC 1 cut(s) 1469
PspGI CCWGG 2 cut(s) 739, 1343
PspN4I GGNNCC 2 cut(s) 593, 984
PspPI GGNCC 1 cut(s) 909
PstI CTGCAG 2 cut(s) 58, 1365
PstNI CAGNNNCTG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 4 cut(s) 436, 454, 731, 1121
RsaNI GTAC 4 cut(s) 435, 453, 730, 1120
SacI GAGCTC 2 cut(s) 584, 1232
SacII CCGCGG 1 cut(s) 615
SapI GCTCTTC 2 cut(s) 204, 1059
SaqAI TTAA 2 cut(s) 1071, 1299
Sau3AI GATC 6 cut(s) 265, 406, 898, 1110, 1320, 1369
Sau96I GGNCC 1 cut(s) 909
SchI GAGTC 3 cut(s) 192, 293, 835
ScrFI CCNGG 2 cut(s) 741, 1345
SduI GDGCHC 5 cut(s) 72, 366, 584, 594, 1232
SfaNI GCATC 4 cut(s) 402, 494, 1015, 1019
SfcI CTRYAG 3 cut(s) 54, 1361, 1408
Sfr303I CCGCGG 1 cut(s) 615
SgrBI CCGCGG 1 cut(s) 615
SinI GGWCC 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
SphI GCATGC 1 cut(s) 24
SspI AATATT 1 cut(s) 391
SstI GAGCTC 2 cut(s) 584, 1232
StyD4I CCNGG 2 cut(s) 739, 1343
StyI CCWWGG 3 cut(s) 204, 255, 595
TaaI ACNGT 3 cut(s) 16, 1060, 1532
TaqI TCGA 8 cut(s) 72, 183, 264, 294, 569, 963, 1083, 1281
TatI WGTACW 1 cut(s) 452
TauI GCSGC 7 cut(s) 691, 724, 774, 777, 1148, 1151, 1511
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 1071, 1299
Tru9I TTAA 2 cut(s) 1071, 1299
TscAI CASTG 2 cut(s) 105, 1065
TseI GCWGC 8 cut(s) 56, 415, 1142, 1167, 1237, 1360, 1363, 1505
TspDTI ATGAA 6 cut(s) 383, 392, 522, 1302, 1364, 1452
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 2 cut(s) 105, 1065
VpaK11BI GGWCC 1 cut(s) 909
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 1 cut(s) 571
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 2 cut(s) 202, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.