Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

13296143 .. 13298277

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACAACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTCAACCACCGCTTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCTCTGTTTTCCCTTCTGTTATCTCTCTCCCAAACTCAGAAACTCAGAACCAAAACATCAGCAACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACAACTCTAATTTCTTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATCTTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAGCTCTGATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCACAACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTTGCTTGGTATTGATACCAATACTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATAGCGGAATCATCGAGTTTAGCAAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACAAACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGAAATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCGATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAAGTATTTGGTAGAGAGGAAGAGATGTGGTGGGAGACACAAGAACAATGAAGTAGACGACAACAATAACAACAAAAACTTGGATGATCATGGTAATGAAGATGATGATGATGATGATGAAAACATGGAGAAGAAGCCGGAGAGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGGAAATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTTGTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAAAGTACTTGATCAGCTTCAGCTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAACACCAAGATATATGAAGGATCAACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAAGTTGTGGATAAACACTACATGGCTTCTCTTCCCAACAGTAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

428

Amino Acids

48.51

Weight (kDa)

5.03

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	212 - 260	1.3e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccBSI	CCGCTC	2 cut(s)	436, 685
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	8 cut(s)	54, 65, 68, 107, 410, 434, 582, 685
AclWI	GGATC	3 cut(s)	20, 466, 1204
AcuI	CTGAAG	2 cut(s)	303, 1100
AfaI	GTAC	3 cut(s)	497, 689, 1104
AfiI	CCNNNNNNNGG	4 cut(s)	110, 157, 724, 725
AflII	CTTAAG	2 cut(s)	143, 797
AgsI	TTSAA	8 cut(s)	101, 260, 679, 700, 749, 963, 1177, 1238
AluBI	AGCT	6 cut(s)	129, 148, 396, 796, 1114, 1120
AluI	AGCT	6 cut(s)	129, 148, 396, 796, 1114, 1120
Alw26I	GTCTC	2 cut(s)	826, 1099
AlwI	GGATC	3 cut(s)	20, 466, 1204
Ama87I	CYCGRG	1 cut(s)	718
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	1 cut(s)	991
AsuHPI	GGTGA	2 cut(s)	1121, 1166
AvaI	CYCGRG	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	978
BccI	CCATC	2 cut(s)	31, 746
BceAI	ACGGC	1 cut(s)	67
BclI	TGATCA	3 cut(s)	243, 883, 1108
BcoDI	GTCTC	2 cut(s)	826, 1099
BfaI	CTAG	2 cut(s)	372, 714
BfmI	CTRYAG	2 cut(s)	651, 992
BfrI	CTTAAG	2 cut(s)	143, 797
BisI	GCNGC	3 cut(s)	55, 66, 992
BlsI	GCNGC	3 cut(s)	56, 67, 993
BmcAI	AGTACT	1 cut(s)	1104
BmeT110I	CYCGRG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	365, 746
BpiI	GAAGAC	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	759
BsaAI	YACGTR	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 157, 724, 725
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	759
BseGI	GGATG	3 cut(s)	166, 316, 886
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	4 cut(s)	110, 157, 724, 725
BseMII	CTCAG	6 cut(s)	216, 224, 367, 504, 584, 968
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	978
BshFI	GGCC	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	935, 1140
BslI	CCNNNNNNNGG	4 cut(s)	110, 157, 724, 725
BsmAI	GTCTC	2 cut(s)	826, 1099
BsnI	GGCC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	718
BspACI	CCGC	8 cut(s)	54, 65, 68, 107, 410, 434, 582, 685
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	6 cut(s)	215, 223, 366, 503, 583, 969
BspDI	ATCGAT	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	996
BspPI	GGATC	3 cut(s)	20, 466, 1204
BspTI	CTTAAG	2 cut(s)	143, 797
BsrBI	CCGCTC	2 cut(s)	436, 685
BsrI	ACTGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	85, 1166, 1277
Bst6I	CTCTTC	4 cut(s)	616, 778, 812, 1272
BstAFI	CTTAAG	2 cut(s)	143, 797
BstBAI	YACGTR	1 cut(s)	426
BstDEI	CTNAG	6 cut(s)	202, 210, 353, 490, 570, 977
BstF5I	GGATG	3 cut(s)	166, 316, 886
BstMAI	GTCTC	2 cut(s)	826, 1099
BstSFI	CTRYAG	2 cut(s)	651, 992
BstV1I	GCAGC	1 cut(s)	978
BstV2I	GAAGAC	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	695
BsuTUI	ATCGAT	1 cut(s)	759
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	3 cut(s)	166, 316, 886
CciI	TCATGA	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	3 cut(s)	496, 688, 1103
CviAII	CATG	7 cut(s)	18, 304, 887, 922, 987, 1133, 1258
CviQI	GTAC	3 cut(s)	496, 688, 1103
DdeI	CTNAG	6 cut(s)	202, 210, 353, 490, 570, 977
Eam1104I	CTCTTC	4 cut(s)	616, 778, 812, 1272
EarI	CTCTTC	4 cut(s)	616, 778, 812, 1272
EciI	GGCGGA	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	303, 1100
Eco88I	CYCGRG	1 cut(s)	718
FaeI	CATG	7 cut(s)	21, 307, 890, 925, 990, 1136, 1261
FatI	CATG	7 cut(s)	17, 303, 886, 921, 986, 1132, 1257
FauI	CCCGC	2 cut(s)	403, 441
FbaI	TGATCA	3 cut(s)	243, 883, 1108
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	55, 66, 992
FokI	GGATG	3 cut(s)	173, 303, 893
Fsp4HI	GCNGC	3 cut(s)	55, 66, 992
FspBI	CTAG	2 cut(s)	372, 714
GluI	GCNGC	3 cut(s)	55, 66, 992
HaeIII	GGCC	1 cut(s)	695
HapII	CCGG	2 cut(s)	935, 1140
Hin1II	CATG	7 cut(s)	21, 307, 890, 925, 990, 1136, 1261
HinfI	GANTC	5 cut(s)	256, 263, 539, 585, 756
HpaII	CCGG	2 cut(s)	935, 1140
HphI	GGTGA	2 cut(s)	1121, 1166
Hpy166II	GTNNAC	2 cut(s)	43, 853
Hpy188I	TCNGA	5 cut(s)	205, 213, 283, 400, 1065
Hpy188III	TCNNGA	3 cut(s)	260, 304, 749
Hpy8I	GTNNAC	2 cut(s)	43, 853
HpyAV	CCTTC	4 cut(s)	189, 461, 486, 1187
HpyCH4III	ACNGT	3 cut(s)	85, 1166, 1277
HpyCH4IV	ACGT	2 cut(s)	425, 658
HpyCH4V	TGCA	4 cut(s)	364, 994, 1211, 1217
HpyF3I	CTNAG	6 cut(s)	202, 210, 353, 490, 570, 977
HpySE526I	ACGT	2 cut(s)	425, 658
Hsp92II	CATG	7 cut(s)	21, 307, 890, 925, 990, 1136, 1261
Ksp22I	TGATCA	3 cut(s)	243, 883, 1108
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	5 cut(s)	107, 357, 477, 948, 1153
Lsp1109I	GCAGC	1 cut(s)	978
LweI	GCATC	2 cut(s)	365, 746
MaeI	CTAG	2 cut(s)	372, 714
MaeII	ACGT	2 cut(s)	425, 658
MaeIII	GTNAC	6 cut(s)	671, 774, 1009, 1045, 1086, 1277
MbiI	CCGCTC	2 cut(s)	436, 685
MfeI	CAATTG	1 cut(s)	1078
MluCI	AATT	6 cut(s)	31, 268, 295, 701, 741, 1078
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	368, 465, 474, 617, 685, 807, 990, 1136
MseI	TTAA	4 cut(s)	144, 446, 798, 1285
MslI	CAYNNNNRTG	2 cut(s)	678, 891
MspCI	CTTAAG	2 cut(s)	143, 797
MspI	CCGG	2 cut(s)	935, 1140
MunI	CAATTG	1 cut(s)	1078
NlaIII	CATG	7 cut(s)	21, 307, 890, 925, 990, 1136, 1261
NmuCI	GTSAC	1 cut(s)	671
PagI	TCATGA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	695
PfeI	GAWTC	4 cut(s)	256, 263, 585, 756
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	56, 67, 993
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	996
RsaI	GTAC	3 cut(s)	497, 689, 1104
RsaNI	GTAC	3 cut(s)	496, 688, 1103
RseI	CAYNNNNRTG	2 cut(s)	678, 891
SaqAI	TTAA	4 cut(s)	144, 446, 798, 1285
SatI	GCNGC	3 cut(s)	55, 66, 992
ScaI	AGTACT	1 cut(s)	1104
SchI	GAGTC	1 cut(s)	548
SfaNI	GCATC	2 cut(s)	365, 746
SfcI	CTRYAG	2 cut(s)	651, 992
SmiMI	CAYNNNNRTG	2 cut(s)	678, 891
SmlI	CTYRAG	2 cut(s)	143, 797
SmoI	CTYRAG	2 cut(s)	143, 797
Sse9I	AATT	6 cut(s)	31, 268, 295, 701, 741, 1078
SseBI	AGGCCT	1 cut(s)	695
SsiI	CCGC	8 cut(s)	54, 65, 68, 107, 410, 434, 582, 685
SspMI	CTAG	2 cut(s)	372, 714
StuI	AGGCCT	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	85, 1166, 1277
TaiI	ACGT	2 cut(s)	428, 661
TaqI	TCGA	4 cut(s)	35, 266, 591, 759
TasI	AATT	6 cut(s)	31, 268, 295, 701, 741, 1078
TatI	WGTACW	1 cut(s)	1102
TauI	GCSGC	2 cut(s)	57, 68
TfiI	GAWTC	4 cut(s)	256, 263, 585, 756
Tru1I	TTAA	4 cut(s)	144, 446, 798, 1285
Tru9I	TTAA	4 cut(s)	144, 446, 798, 1285
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	1 cut(s)	991
Tsp45I	GTSAC	1 cut(s)	671
Van91I	CCANNNNNTGG	1 cut(s)	110
Vha464I	CTTAAG	2 cut(s)	143, 797
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	2 cut(s)	372, 714
ZrmI	AGTACT	1 cut(s)	1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.