pycom07g06020

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
5332921 .. 5334879
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06020.1

Sequence Viewer

Length: 1542 bp
ATGTATCAAGACACAGTAGGCTGCAACTTTGACCCGAACTCCATCCCTGATTCTGCAGCAGAGAGCTTGCTAGACGTCAACCCGCTTTCCCCACCACCACCGCCGCCTCCACAACAACCGCAAGTTCTCATGCCTTGTTCAGACACCCACCACCACAATAACACCACCACCAACAGCGGGTTTGGTGTCGAAGAAAACATCAGACTCTCCATAGAAGAGCTTTCTTATCATCATCACCGTCACCAAAATCATCATTCCTCCATGGACATCGAGCTCCAAAACGAACTTGGGTTCCATGTCGATAACCCATACAACAACACCACTAACCATGACAACAGCATCAACAATTCCCATTTGGTGTATTTTGAGCACCCAACAAATTGGGACAACAATATTCATGGAGTCCATGATCAGATGCAGCAACAATTCCCGGATGGTACTACTACTGCTACTTCTACTCCATACCCACAACCACCTGGCCTTCTCAACGTTTTCAGCTTGCCCAGATGCTCCCCTTCCTCTCTTCTCCAAAATCCATCCATCACCTTCACAAACCCCATCCAAAAAACCTCGAATTTTCCGAGCTCTTTGGGGTCCCTCGGAGACCTCCCCAGCGCCGTTGACACTCCACAGGGGACGGCTTCTTCCGTTCTCTATGACCCTCTTTTCCATTTGAACCTCCCTCCACAGCCGCCAATATTCAGGGAGTTGCTTCAATCTCTGCCGCATGGGTACACCTTGCCTGGCTCAGGAAACGGGTCGCTGTTCAGTAGCGGCGGCGATGAGAGAGAGGGCAGCGGAGGAGGAGTTCTGTATGACCCAGATCCAGATGGAAGTCTTGGGAGGCAGTTTGATGGCGGAGTTTTGGAGTTCTCGAGAGAAATGGCTTCTAATGGGAGAGGAAGAGATCTCAAGGGGACCAAACACTTTGCCACTGAGCGCCAAAGGAGACAGCAATTGAATGGCAAGTACGATAGCTTGAAGACGTTGGTTCCAAACCCAACAAAGAATGATAGAGCATCAATTCTGGGAGATGCAATTGATTACATAAACGAGCTTCTGCGGACAGTGGACGAGCTGAAATTGCTGGTGGAGAAGAAAAGGTGTGGGACAGAGAGGATCAAGAGGCACAAGACTGAACACGATGGAGGTTCCGCCGGAGACGATGAGACCTGTAATGTGAAGCCTCTTGGAGAGCATCATGACCAGTCCTATAGCAATGGCTCTCTGAGGAGCTCATGGCTTCAAAGGAAATCCAAAGACACCCAAGTCGATATCCGCATTATTGACGATGAAGTTACTATCAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTTTGTGTCCAGGATTCTTGATGAGCTGCAGCTTGATCTTCACCATGTTGCTGGTGGCCACATTGGCAATTCCTACAGCTTCTTGTTCAATACCAAGATGTATGAAGGGTCTTGTTTGTATGCAAGTGCAATAGCTGGGAAGCTCATTGAGGTTCTGGACAGACAATATGCAGCAGCGGTTCCACCCACCAGCAGTTATTAG

Protein Analysis

514

Amino Acids

56.8

Weight (kDa)

5.67

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 307 - 353 1.5e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1268
AatII GACGTC 1 cut(s) 78
AclI AACGTT 1 cut(s) 489
AclWI GGATC 2 cut(s) 818, 1127
AcoI YGGCCR 1 cut(s) 1396
AcsI RAATTY 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 3 cut(s) 439, 734, 971
AfiI CCNNNNNNNGG 2 cut(s) 177, 749
AgsI TTSAA 6 cut(s) 676, 716, 961, 982, 1247, 1429
AjnI CCWGG 3 cut(s) 475, 742, 1349
AloI GAACNNNNNNTCC 4 cut(s) 276, 308, 792, 824
Alw21I GWGCWC 4 cut(s) 276, 372, 587, 1238
Alw26I GTCTC 4 cut(s) 597, 943, 1155, 1163
AlwI GGATC 2 cut(s) 818, 1127
Ama87I CYCGRG 1 cut(s) 874
AoxI GGCC 2 cut(s) 478, 1396
ApeKI GCWGC 8 cut(s) 21, 56, 418, 795, 1366, 1369, 1511, 1514
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 2 cut(s) 617, 942
AspS9I GGNCC 2 cut(s) 594, 918
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 227, 233, 535, 1373
AvaI CYCGRG 1 cut(s) 874
AvaII GGWCC 2 cut(s) 594, 918
BalI TGGCCA 1 cut(s) 1398
BanII GRGCYC 3 cut(s) 276, 587, 1238
BbsI GAAGAC 1 cut(s) 989
Bbv12I GWGCWC 4 cut(s) 276, 372, 587, 1238
BbvI GCAGC 8 cut(s) 8, 68, 430, 807, 1353, 1381, 1523, 1526
BccI CCATC 8 cut(s) 50, 428, 544, 548, 566, 824, 848, 1139
BceAI ACGGC 2 cut(s) 602, 654
BciT130I CCWGG 3 cut(s) 477, 744, 1351
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 4 cut(s) 597, 943, 1155, 1163
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 4 cut(s) 54, 1213, 1367, 1414
BfoI RGCGCY 2 cut(s) 618, 943
BglI GCCNNNNNGGC 1 cut(s) 1404
BglII AGATCT 1 cut(s) 907
Bme1390I CCNGG 4 cut(s) 431, 477, 744, 1351
Bme18I GGWCC 2 cut(s) 594, 918
BmeT110I CYCGRG 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 594, 918
BmiI GGNNCC 7 cut(s) 293, 595, 596, 919, 993, 1153, 1521
BmrFI CCNGG 4 cut(s) 431, 477, 744, 1351
BmsI GCATC 6 cut(s) 348, 405, 497, 1024, 1028, 1207
BpiI GAAGAC 1 cut(s) 989
Bpu10I CCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 597, 1163
BsaJI CCNNGG 2 cut(s) 261, 598
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 442, 472, 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 749
Bse1I ACTGG 2 cut(s) 1207, 1314
Bse3DI GCAATG 1 cut(s) 1225
BseBI CCWGG 3 cut(s) 477, 744, 1351
BseDI CCNNGG 2 cut(s) 261, 598
BseGI GGATG 4 cut(s) 42, 439, 536, 558
BseLI CCNNNNNNNGG 2 cut(s) 177, 749
BseMI GCAATG 1 cut(s) 1225
BseMII CTCAG 3 cut(s) 762, 927, 1220
BseNI ACTGG 2 cut(s) 1207, 1314
BseRI GAGGAG 3 cut(s) 816, 819, 1246
BseXI GCAGC 8 cut(s) 8, 68, 430, 807, 1353, 1381, 1523, 1526
BseYI CCCAGC 2 cut(s) 611, 1475
BsgI GTGCAG 1 cut(s) 1334
BshFI GGCC 2 cut(s) 480, 1398
BsiHKAI GWGCWC 4 cut(s) 276, 372, 587, 1238
BsiHKCI CYCGRG 1 cut(s) 874
BsiSI CCGG 2 cut(s) 431, 1158
BslFI GGGAC 5 cut(s) 398, 580, 649, 931, 1123
BslI CCNNNNNNNGG 2 cut(s) 177, 749
BsmAI GTCTC 4 cut(s) 597, 943, 1155, 1163
BsmBI CGTCTC 1 cut(s) 1155
BsmFI GGGAC 5 cut(s) 398, 580, 649, 931, 1123
BsnI GGCC 2 cut(s) 480, 1398
Bso31I GGTCTC 2 cut(s) 597, 1163
BsoBI CYCGRG 1 cut(s) 874
Bsp1286I GDGCHC 4 cut(s) 276, 372, 587, 1238
Bsp143I GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
Bsp19I CCATGG 1 cut(s) 261
BspANI GGCC 2 cut(s) 480, 1398
BspCNI CTCAG 3 cut(s) 761, 928, 1221
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 7 cut(s) 293, 595, 596, 919, 993, 1153, 1521
BspMAI CTGCAG 2 cut(s) 58, 1371
BspPI GGATC 2 cut(s) 818, 1127
BspQI GCTCTTC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 597, 1163
BsrDI GCAATG 1 cut(s) 1225
BsrI ACTGG 2 cut(s) 1207, 1314
BssECI CCNNGG 2 cut(s) 261, 598
BssMI GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 477, 744, 1351
Bst4CI ACNGT 3 cut(s) 16, 239, 1069
Bst6I CTCTTC 3 cut(s) 210, 528, 898
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 68, 500
BstDEI CTNAG 3 cut(s) 748, 936, 1229
BstDSI CCRYGG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 4 cut(s) 42, 439, 536, 558
BstH2I RGCGCY 2 cut(s) 618, 943
BstHHI GCGC 2 cut(s) 617, 942
BstKTI GATC 6 cut(s) 412, 826, 910, 1122, 1329, 1378
BstMAI GTCTC 4 cut(s) 597, 943, 1155, 1163
BstMBI GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
BstMWI GCNNNNNNNGC 2 cut(s) 1084, 1404
BstNI CCWGG 3 cut(s) 477, 744, 1351
BstSCI CCNGG 4 cut(s) 429, 475, 742, 1349
BstSFI CTRYAG 4 cut(s) 54, 1213, 1367, 1414
BstV1I GCAGC 8 cut(s) 8, 68, 430, 807, 1353, 1381, 1523, 1526
BstV2I GAAGAC 1 cut(s) 989
BstX2I RGATCY 2 cut(s) 823, 907
BstXI CCANNNNNNTGG 2 cut(s) 381, 1391
BstYI RGATCY 2 cut(s) 823, 907
BsuRI GGCC 2 cut(s) 480, 1398
BtgI CCRYGG 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 4 cut(s) 42, 439, 536, 558
BtsIMutI CAGTG 2 cut(s) 933, 1074
Cac8I GCNNGC 2 cut(s) 68, 500
CciI TCATGA 1 cut(s) 1201
CfoI GCGC 2 cut(s) 617, 942
Cfr13I GGNCC 2 cut(s) 594, 918
Csp6I GTAC 3 cut(s) 438, 733, 970
CviQI GTAC 3 cut(s) 438, 733, 970
DdeI CTNAG 3 cut(s) 748, 936, 1229
DpnI GATC 6 cut(s) 411, 825, 909, 1121, 1328, 1377
DpnII GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
DrdI GACNNNNNNGTC 1 cut(s) 1268
DseDI GACNNNNNNGTC 1 cut(s) 1268
EaeI YGGCCR 1 cut(s) 1396
Eam1104I CTCTTC 3 cut(s) 210, 528, 898
EarI CTCTTC 3 cut(s) 210, 528, 898
EciI GGCGGA 2 cut(s) 873, 1144
Ecl136II GAGCTC 3 cut(s) 274, 585, 1236
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 276, 587, 1238
Eco31I GGTCTC 2 cut(s) 597, 1163
Eco32I GATATC 1 cut(s) 1276
Eco47I GGWCC 2 cut(s) 594, 918
Eco53kI GAGCTC 3 cut(s) 274, 585, 1236
Eco88I CYCGRG 1 cut(s) 874
EcoICRI GAGCTC 3 cut(s) 274, 585, 1236
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 594
EcoRII CCWGG 3 cut(s) 475, 742, 1349
EcoRV GATATC 1 cut(s) 1276
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 3 cut(s) 276, 587, 1238
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 1155
FaqI GGGAC 5 cut(s) 398, 580, 649, 931, 1123
FauI CCCGC 2 cut(s) 90, 170
FbaI TGATCA 1 cut(s) 409
FokI GGATG 4 cut(s) 29, 446, 523, 545
FriOI GRGCYC 3 cut(s) 276, 587, 1238
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 616, 941
GsaI CCCAGC 2 cut(s) 615, 1479
HaeII RGCGCY 2 cut(s) 618, 943
HaeIII GGCC 2 cut(s) 480, 1398
HapII CCGG 2 cut(s) 431, 1158
HhaI GCGC 2 cut(s) 617, 942
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 2 cut(s) 615, 940
HinP1I GCGC 2 cut(s) 615, 940
HincII GTYRAC 2 cut(s) 79, 622
HindII GTYRAC 2 cut(s) 79, 622
HinfI GANTC 4 cut(s) 50, 204, 402, 1354
HpaII CCGG 2 cut(s) 431, 1158
HphI GGTGA 4 cut(s) 227, 233, 535, 1373
Hpy166II GTNNAC 4 cut(s) 79, 622, 735, 1072
Hpy188I TCNGA 6 cut(s) 142, 203, 414, 582, 602, 1230
Hpy188III TCNNGA 9 cut(s) 8, 750, 827, 874, 876, 1123, 1202, 1358, 1496
Hpy8I GTNNAC 4 cut(s) 79, 622, 735, 1072
HpyAV CCTTC 4 cut(s) 491, 525, 556, 1439
HpyCH4III ACNGT 3 cut(s) 16, 239, 1069
HpyCH4IV ACGT 3 cut(s) 75, 489, 986
HpyCH4V TGCA 9 cut(s) 24, 56, 418, 1037, 1315, 1369, 1463, 1469, 1511
HpyF10VI GCNNNNNNNGC 2 cut(s) 1084, 1404
HpyF3I CTNAG 3 cut(s) 748, 936, 1229
HpySE526I ACGT 3 cut(s) 75, 489, 986
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 2 cut(s) 615, 940
KflI GGGWCCC 1 cut(s) 594
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 279, 515, 1233
Lsp1109I GCAGC 8 cut(s) 8, 68, 430, 807, 1353, 1381, 1523, 1526
LweI GCATC 6 cut(s) 348, 405, 497, 1024, 1028, 1207
MaeI CTAG 1 cut(s) 71
MaeII ACGT 3 cut(s) 75, 489, 986
MaeIII GTNAC 2 cut(s) 239, 1297
MalI GATC 6 cut(s) 411, 825, 909, 1121, 1328, 1377
MboI GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
MfeI CAATTG 2 cut(s) 956, 1038
MflI RGATCY 2 cut(s) 823, 907
MhlI GDGCHC 4 cut(s) 276, 372, 587, 1238
MlsI TGGCCA 1 cut(s) 1398
MluCI AATT 9 cut(s) 346, 379, 425, 574, 956, 1023, 1038, 1082, 1408
MluNI TGGCCA 1 cut(s) 1398
MlyI GAGTC 2 cut(s) 198, 411
Mox20I TGGCCA 1 cut(s) 1398
MscI TGGCCA 1 cut(s) 1398
Msp20I TGGCCA 1 cut(s) 1398
MspA1I CMGCKG 3 cut(s) 177, 798, 1517
MspI CCGG 2 cut(s) 431, 1158
MspR9I CCNGG 4 cut(s) 431, 477, 744, 1351
MunI CAATTG 2 cut(s) 956, 1038
MvaI CCWGG 3 cut(s) 477, 744, 1351
MwoI GCNNNNNNNGC 2 cut(s) 1084, 1404
NciI CCSGG 1 cut(s) 431
NcoI CCATGG 1 cut(s) 261
NdeII GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
NlaIV GGNNCC 7 cut(s) 293, 595, 596, 919, 993, 1153, 1521
NmuCI GTSAC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 874
PagI TCATGA 1 cut(s) 1201
PciSI GCTCTTC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PfeI GAWTC 2 cut(s) 50, 1354
PfoI TCCNGGA 2 cut(s) 429, 1349
PleI GAGTC 2 cut(s) 198, 410
PpsI GAGTC 2 cut(s) 198, 410
PpuMI RGGWCCY 1 cut(s) 594
Psp124BI GAGCTC 3 cut(s) 276, 587, 1238
Psp1406I AACGTT 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 475, 742, 1349
PspFI CCCAGC 2 cut(s) 611, 1475
PspGI CCWGG 3 cut(s) 475, 742, 1349
PspN4I GGNNCC 7 cut(s) 293, 595, 596, 919, 993, 1153, 1521
PspPI GGNCC 2 cut(s) 594, 918
PspPPI RGGWCCY 1 cut(s) 594
PstI CTGCAG 2 cut(s) 58, 1371
PsuI RGATCY 2 cut(s) 823, 907
RsaI GTAC 3 cut(s) 439, 734, 971
RsaNI GTAC 3 cut(s) 438, 733, 970
SacI GAGCTC 3 cut(s) 276, 587, 1238
SapI GCTCTTC 1 cut(s) 210
Sau3AI GATC 6 cut(s) 409, 823, 907, 1119, 1326, 1375
Sau96I GGNCC 2 cut(s) 594, 918
SchI GAGTC 2 cut(s) 198, 411
ScrFI CCNGG 4 cut(s) 431, 477, 744, 1351
SduI GDGCHC 4 cut(s) 276, 372, 587, 1238
SfaNI GCATC 6 cut(s) 348, 405, 497, 1024, 1028, 1207
SfcI CTRYAG 4 cut(s) 54, 1213, 1367, 1414
Sfr274I CTCGAG 1 cut(s) 874
SinI GGWCC 2 cut(s) 594, 918
SlaI CTCGAG 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 874, 911
SmoI CTYRAG 2 cut(s) 874, 911
Sse9I AATT 9 cut(s) 346, 379, 425, 574, 956, 1023, 1038, 1082, 1408
SspI AATATT 2 cut(s) 394, 699
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 3 cut(s) 276, 587, 1238
StyD4I CCNGG 4 cut(s) 429, 475, 742, 1349
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 16, 239, 1069
TaiI ACGT 3 cut(s) 78, 492, 989
TaqI TCGA 6 cut(s) 189, 270, 300, 572, 875, 1272
TasI AATT 9 cut(s) 346, 379, 425, 574, 956, 1023, 1038, 1082, 1408
TauI GCSGC 5 cut(s) 106, 694, 727, 777, 780
TfiI GAWTC 2 cut(s) 50, 1354
TscAI CASTG 2 cut(s) 940, 1074
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 8 cut(s) 21, 56, 418, 795, 1366, 1369, 1511, 1514
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 386, 1308, 1458
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 2 cut(s) 940, 1074
VpaK11BI GGWCC 2 cut(s) 594, 918
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 2 cut(s) 284, 1391
XhoI CTCGAG 1 cut(s) 874
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.