Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

15228340 .. 15230787

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G097200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTATGAAGATACAGTAGGCTGCAACTTTGACCAAAACTCCATGCCAGAATCAGCAGAAAGTGTCCTCAACCTCAACCCTCTTCCCCCACCACCTCCACCACAAGTTCTCATGCCTTCTCCCTCAGAAACCCACAACAACAACAACAACAACAGCTTTGCTGTTGCAGAAAACTTGAGACTCTCCATGGAAGAGCTCTCCTACCCTCATCAACAAGATCATCATGCTGCCATGGAAATTGAGCTCCAAAATGAACTTGGGTTCAATCCATACAGCACCAATACTGACCAGAACAACCATAGCAGCCATTTGGTTTCCTTTGAGCAACCAACCAATTGGGACAATATTCATGGTGTCCATGATCAGATGCAGCAACAATTGCAAGACGGTGCTAATGGTCCATACCCACCTACACCTGACCTTCTCAACCTTTTCAGCTTACCTAGATGCTCACCCTCTTCTGTTCTCCAAAACTCGTCCATTAACTTCACAAACCCCAACCCCAAAAGCTCGAATTTCCCGAACTCTTTGGGGTTCCTCGGAGATGTCCATGGTGGGATTGACACCCCGCCAGGGACAGCGAGTTCGGTTCTCTATGACCCACTTTTCCATTTGAACCTGCCTCCACAGCCACCATTGTTCAGGGAATTGCTTCAGTCCTTGCCACATGGGTACAGCTTGCCAGGCTCAAGAAATGGGTCTTTGTTTAGTAGTGGTGGGGATGACAGAGAGGGGATTGGAGGAGGGGTTTACTCCGATGGGATTAATAATGGGAGGCAATTTGAGAATGGGGTGTTGGAGTTCTCCAGAGAAATGGGTTCTATTGGAAGAGGAAGAGATGTCAAAGGGACGAAACACTTTGCCACTGAGAAACACAGAAGAGTCCAGTTGAATGGCAAGTACAGTGCCTTGAGGGATTTGGTTCCAAACCCAACAAAGACTGATAGAGCATCAATTGTGGGAGATGCAATTGATTACATAAAGGAGCTTCTGAGGACAGTGGATGAGCTGAAATTGCTGGTGGAGAAGAAAAGGTGTGGTAGAGAGAGGAGCAAGAGGCGCAGGACTGAACAAGATGGTGGTGCTGGAGATGATGAGAGCTGCAACATGAAGCCTCTTGGTGACCCTCATGACCAGTCCTACAACAATGGCTCTCTGAGGAGCTCATGGCTTCAGAGGAAATCCAAGGACACTGAGGTCGATATCCGCATTATCGATGATGAAGTTACGATCAAACTGGTTCAGAGGAAGAAGATCAATCTGTTGCTGTATGTGTCCAAGCTTCTTGATGAGCTGCAGCTTGATCTGCATCATGTTGCTGGTGGACACATTGGCAATTCCTACAGCTTCTTGTTCAACACCAAGATGTATGAAGGGTCATCTTTGTATGCAAGTGCTATAGCCCAAAAGCTCATTGAGGTTCTGGACAAACAATATGCAGCAGTTCCACCTACCAACAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

489

Amino Acids

54.2

Weight (kDa)

5.58

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1196
Acc36I	ACCTGC	1 cut(s)	627
AciI	CCGC	2 cut(s)	569, 1207
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	638, 1157
AfaI	GTAC	2 cut(s)	674, 902
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	4 cut(s)	265, 616, 892, 1357
AjnI	CCWGG	2 cut(s)	571, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
Alw21I	GWGCWC	3 cut(s)	198, 246, 1166
Alw26I	GTCTC	1 cut(s)	172
ApeKI	GCWGC	8 cut(s)	21, 227, 303, 370, 1101, 1294, 1297, 1439
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	1062
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	444, 1133
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	3 cut(s)	198, 246, 1166
Bbv12I	GWGCWC	3 cut(s)	198, 246, 1166
BbvI	GCAGC	8 cut(s)	8, 214, 315, 382, 1088, 1281, 1309, 1451
BccI	CCATC	2 cut(s)	752, 1070
BciT130I	CCWGG	2 cut(s)	573, 684
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	1295, 1342, 1398
BfuAI	ACCTGC	1 cut(s)	627
BisI	GCNGC	8 cut(s)	22, 228, 304, 371, 1102, 1295, 1298, 1440
BlsI	GCNGC	8 cut(s)	23, 229, 305, 372, 1103, 1296, 1299, 1441
Bme1390I	CCNGG	2 cut(s)	573, 684
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	536, 924
BmrFI	CCNGG	2 cut(s)	573, 684
BmsI	GCATC	5 cut(s)	357, 437, 955, 959, 1318
BpmI	CTGGAG	2 cut(s)	790, 1107
BpuEI	CTTGAG	3 cut(s)	196, 673, 931
Bsa29I	ATCGAT	1 cut(s)	1215
BsaBI	GATNNNNATC	1 cut(s)	1308
BsaJI	CCNNGG	6 cut(s)	186, 231, 538, 550, 572, 1185
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	3 cut(s)	886, 1135, 1242
Bse8I	GATNNNNATC	1 cut(s)	1308
BseBI	CCWGG	2 cut(s)	573, 684
BseCI	ATCGAT	1 cut(s)	1215
BseDI	CCNNGG	6 cut(s)	186, 231, 538, 550, 572, 1185
BseGI	GGATG	2 cut(s)	727, 1009
BseJI	GATNNNNATC	1 cut(s)	1308
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	5 cut(s)	138, 858, 983, 1148, 1185
BseNI	ACTGG	3 cut(s)	886, 1135, 1242
BseRI	GAGGAG	3 cut(s)	756, 1063, 1174
BseXI	GCAGC	8 cut(s)	8, 214, 315, 382, 1088, 1281, 1309, 1451
BshVI	ATCGAT	1 cut(s)	1215
BsiHKAI	GWGCWC	3 cut(s)	198, 246, 1166
BslFI	GGGAC	3 cut(s)	353, 589, 862
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	3 cut(s)	353, 589, 862
Bsp1286I	GDGCHC	3 cut(s)	198, 246, 1166
Bsp143I	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
Bsp19I	CCATGG	3 cut(s)	186, 231, 550
BspACI	CCGC	2 cut(s)	569, 1207
BspCNI	CTCAG	5 cut(s)	137, 859, 984, 1149, 1186
BspDI	ATCGAT	1 cut(s)	1215
BspHI	TCATGA	1 cut(s)	1129
BspLI	GGNNCC	2 cut(s)	536, 924
BspMAI	CTGCAG	1 cut(s)	1299
BspMI	ACCTGC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	886, 1135, 1242
BssECI	CCNNGG	6 cut(s)	186, 231, 538, 550, 572, 1185
BssMI	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
BssT1I	CCWWGG	4 cut(s)	186, 231, 550, 1185
Bst2UI	CCWGG	2 cut(s)	573, 684
Bst4CI	ACNGT	5 cut(s)	16, 389, 905, 1000, 1460
Bst6I	CTCTTC	6 cut(s)	87, 186, 463, 823, 829, 874
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	5 cut(s)	124, 867, 992, 1157, 1194
BstDSI	CCRYGG	3 cut(s)	186, 231, 550
BstEII	GGTNACC	1 cut(s)	1121
BstF5I	GGATG	2 cut(s)	727, 1009
BstHHI	GCGC	1 cut(s)	1062
BstKTI	GATC	5 cut(s)	220, 364, 1233, 1257, 1306
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
BstMWI	GCNNNNNNNGC	6 cut(s)	379, 628, 684, 1015, 1059, 1306
BstNI	CCWGG	2 cut(s)	573, 684
BstPI	GGTNACC	1 cut(s)	1121
BstSCI	CCNGG	2 cut(s)	571, 682
BstSFI	CTRYAG	3 cut(s)	1295, 1342, 1398
BstV1I	GCAGC	8 cut(s)	8, 214, 315, 382, 1088, 1281, 1309, 1451
BstXI	CCANNNNNNTGG	3 cut(s)	336, 814, 893
Bsu15I	ATCGAT	1 cut(s)	1215
BsuTUI	ATCGAT	1 cut(s)	1215
BtgI	CCRYGG	3 cut(s)	186, 231, 550
BtsCI	GGATG	2 cut(s)	727, 1009
BtsIMutI	CAGTG	4 cut(s)	864, 910, 1005, 1191
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	680
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	1 cut(s)	1062
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	1215
Csp6I	GTAC	2 cut(s)	673, 901
CviQI	GTAC	2 cut(s)	673, 901
DdeI	CTNAG	5 cut(s)	124, 867, 992, 1157, 1194
DpnI	GATC	5 cut(s)	219, 363, 1232, 1256, 1305
DpnII	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
DrdI	GACNNNNNNGTC	1 cut(s)	1196
DseDI	GACNNNNNNGTC	1 cut(s)	1196
Eam1104I	CTCTTC	6 cut(s)	87, 186, 463, 823, 829, 874
EarI	CTCTTC	6 cut(s)	87, 186, 463, 823, 829, 874
Ecl136II	GAGCTC	3 cut(s)	196, 244, 1164
Eco130I	CCWWGG	4 cut(s)	186, 231, 550, 1185
Eco24I	GRGCYC	3 cut(s)	198, 246, 1166
Eco32I	GATATC	1 cut(s)	1204
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	3 cut(s)	196, 244, 1164
Eco57I	CTGAAG	2 cut(s)	638, 1157
Eco91I	GGTNACC	1 cut(s)	1121
EcoICRI	GAGCTC	3 cut(s)	196, 244, 1164
EcoO65I	GGTNACC	1 cut(s)	1121
EcoRII	CCWGG	2 cut(s)	571, 682
EcoRV	GATATC	1 cut(s)	1204
EcoT14I	CCWWGG	4 cut(s)	186, 231, 550, 1185
EcoT38I	GRGCYC	3 cut(s)	198, 246, 1166
ErhI	CCWWGG	4 cut(s)	186, 231, 550, 1185
FaqI	GGGAC	3 cut(s)	353, 589, 862
FauI	CCCGC	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	8 cut(s)	22, 228, 304, 371, 1102, 1295, 1298, 1440
FokI	GGATG	2 cut(s)	734, 1016
FriOI	GRGCYC	3 cut(s)	198, 246, 1166
Fsp4HI	GCNGC	8 cut(s)	22, 228, 304, 371, 1102, 1295, 1298, 1440
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	1061
GluI	GCNGC	8 cut(s)	22, 228, 304, 371, 1102, 1295, 1298, 1440
GsuI	CTGGAG	2 cut(s)	790, 1107
HhaI	GCGC	1 cut(s)	1062
Hin6I	GCGC	1 cut(s)	1060
HinP1I	GCGC	1 cut(s)	1060
HindIII	AAGCTT	1 cut(s)	1280
HinfI	GANTC	3 cut(s)	50, 180, 882
HphI	GGTGA	2 cut(s)	444, 1133
Hpy166II	GTNNAC	2 cut(s)	751, 1325
Hpy188I	TCNGA	8 cut(s)	127, 366, 542, 757, 993, 1158, 1176, 1245
Hpy188III	TCNNGA	6 cut(s)	520, 690, 807, 1130, 1286, 1424
Hpy8I	GTNNAC	2 cut(s)	751, 1325
HpyAV	CCTTC	3 cut(s)	126, 431, 1367
HpyCH4III	ACNGT	5 cut(s)	16, 389, 905, 1000, 1460
HpyF10VI	GCNNNNNNNGC	6 cut(s)	379, 628, 684, 1015, 1059, 1306
HpyF3I	CTNAG	5 cut(s)	124, 867, 992, 1157, 1194
HspAI	GCGC	1 cut(s)	1060
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	4 cut(s)	249, 985, 1050, 1161
Lsp1109I	GCAGC	8 cut(s)	8, 214, 315, 382, 1088, 1281, 1309, 1451
LweI	GCATC	5 cut(s)	357, 437, 955, 959, 1318
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	1121, 1225
MalI	GATC	5 cut(s)	219, 363, 1232, 1256, 1305
MboI	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
MfeI	CAATTG	4 cut(s)	334, 377, 954, 969
MhlI	GDGCHC	3 cut(s)	198, 246, 1166
MlyI	GAGTC	2 cut(s)	174, 891
MmeI	TCCRAC	1 cut(s)	777
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	483, 765
MslI	CAYNNNNRTG	1 cut(s)	1364
MspR9I	CCNGG	2 cut(s)	573, 684
MunI	CAATTG	4 cut(s)	334, 377, 954, 969
MvaI	CCWGG	2 cut(s)	573, 684
MwoI	GCNNNNNNNGC	6 cut(s)	379, 628, 684, 1015, 1059, 1306
NcoI	CCATGG	3 cut(s)	186, 231, 550
NdeII	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
NlaIV	GGNNCC	2 cut(s)	536, 924
NmuCI	GTSAC	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	1129
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	8 cut(s)	23, 229, 305, 372, 1103, 1296, 1299, 1441
PleI	GAGTC	2 cut(s)	174, 890
PpsI	GAGTC	2 cut(s)	174, 890
PshBI	ATTAAT	1 cut(s)	765
Psp124BI	GAGCTC	3 cut(s)	198, 246, 1166
Psp6I	CCWGG	2 cut(s)	571, 682
PspEI	GGTNACC	1 cut(s)	1121
PspGI	CCWGG	2 cut(s)	571, 682
PspN4I	GGNNCC	2 cut(s)	536, 924
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	1299
RsaI	GTAC	2 cut(s)	674, 902
RsaNI	GTAC	2 cut(s)	673, 901
RseI	CAYNNNNRTG	1 cut(s)	1364
SacI	GAGCTC	3 cut(s)	198, 246, 1166
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	483, 765
SatI	GCNGC	8 cut(s)	22, 228, 304, 371, 1102, 1295, 1298, 1440
Sau3AI	GATC	5 cut(s)	217, 361, 1230, 1254, 1303
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	174, 891
ScrFI	CCNGG	2 cut(s)	573, 684
SduI	GDGCHC	3 cut(s)	198, 246, 1166
SfaNI	GCATC	5 cut(s)	357, 437, 955, 959, 1318
SfcI	CTRYAG	3 cut(s)	1295, 1342, 1398
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	1364
SmlI	CTYRAG	3 cut(s)	175, 688, 910
SmoI	CTYRAG	3 cut(s)	175, 688, 910
SsiI	CCGC	2 cut(s)	569, 1207
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	3 cut(s)	198, 246, 1166
StyD4I	CCNGG	2 cut(s)	571, 682
StyI	CCWWGG	4 cut(s)	186, 231, 550, 1185
TaaI	ACNGT	5 cut(s)	16, 389, 905, 1000, 1460
TaqI	TCGA	3 cut(s)	512, 1200, 1215
TatI	WGTACW	1 cut(s)	900
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	483, 765
Tru9I	TTAA	2 cut(s)	483, 765
TscAI	CASTG	4 cut(s)	871, 910, 1005, 1198
TseFI	GTSAC	1 cut(s)	1121
TseI	GCWGC	8 cut(s)	21, 227, 303, 370, 1101, 1294, 1297, 1439
Tsp45I	GTSAC	1 cut(s)	1121
TspDTI	ATGAA	6 cut(s)	21, 267, 338, 1124, 1236, 1386
TspRI	CASTG	4 cut(s)	871, 910, 1005, 1198
VpaK11BI	GGWCC	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.