Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

2672909 .. 2674897

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTACGTGGACAGTAGTGCTGCAGGTGCCTGCAGCAATGTTGATCCCAATAACACCAATAATAACCCCATGTCAGAATCTGCCCCAGAAGTTGTCCTCCTCAACCACAGCCACAACACCACCACCTTTGCTCATGAAGAAAACTTCAATAGGCTCTCCATGGAAGAAGAGCTCTCTAATTACTACCACAACACCGCCATGGAAATTGAGCAATTTGAGAATGAGACGGACCAATTTAATACCAGCAACCCTCATTTGGTCAATCCCTTTGAGACTCACCAAGCTACAAATTGGGACAATAATGATGAAATGCAACAACAATCATCATCACCTGATATGCTCAGCCTTTTTTACTCGCCCTCCTCTTCTGTGCTCCCACACTCCTCCATTACCTTCACTAACCCCAAGAACCTGGGAGGTTGTTTCCCAGGGTCTTTCGGGTATGGGGCCCTGCTGGAGCCCCCATCTGGGGCGGCGGTCTCTTCGGTCATGTATGACCCAATGATCCACCTGAACCAGCAACCTCCGCAGTCGCAGCCGCCTCTGTTCAGGGAGCTGCTTCAGTCCCTGCCACATCGATACAACTTGGGTGGGCCCAGTAATGGGTCTATTTTATTTAGCAATGGTAGGAATGAGGAAGAGCATGGGAGTAGGCAATTGTTTGAGAATGGAGTAATGGAGTTTTCTAAAGAGATGAAGCCATGTGGAAGAGGAAGAGGAAGAGGTAGAGGTGGGAATAAAGGGACCAAGTTGACTGAGCACGAAAGGAGAGTCAAGACCAATCGTCAGTATACTGCTTTGAGGGAATTGGTTCCGAATCCAACCAAGTCTGATCGAGCTTCTATAGTGGGAGATGCCATTGATTACATACAAGAGCTCAGGAGGACTGTGAGTGAGCTGAAGCTGCTGGTGGAGAAGAAAAGGTATGCGAGAGAGAGGAGCAAGAGGCACAAAACTGAGAAAGACATTGTTGCCGGAGACAACGATGAGAGCTGTAACATGAAGCCTCTTGGTGACCCTGATCATGACCACTCCAACAATGAGTCTCTGAGGAGTTCATGGCTTCAAAGGAAGTCCAAAGACACTGAGGTTCTTGATGAGTTACTGCTTGAACTCCATCATGCTTCAGGTGGACACATTGGGAATTCATACAGTTTTTTGTTCAACACCAAGATGTATGAAGGGTCTTGTTTGTATGCAAGTGCCATTGCCAACAAGCTCATCGAGGCTCTGGACAGACAATATGCAGCAATTCCCCCTACCAATAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

425

Amino Acids

47.56

Weight (kDa)

5.71

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	252 - 294	1.2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	791
AciI	CCGC	5 cut(s)	195, 473, 476, 527, 539
AclWI	GGATC	2 cut(s)	38, 499
AcsI	RAATTY	1 cut(s)	1144
AcuI	CTGAAG	3 cut(s)	545, 920, 1110
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	6 cut(s)	256, 467, 468, 469, 602, 603
AgsI	TTSAA	4 cut(s)	148, 1067, 1112, 1165
AhdI	GACNNNNNGTC	1 cut(s)	783
AjnI	CCWGG	2 cut(s)	411, 427
AluBI	AGCT	9 cut(s)	172, 284, 556, 839, 877, 898, 904, 993, 1219
AluI	AGCT	9 cut(s)	172, 284, 556, 839, 877, 898, 904, 993, 1219
Alw21I	GWGCWC	4 cut(s)	174, 375, 762, 879
Alw26I	GTCTC	5 cut(s)	218, 266, 484, 972, 1050
AlwI	GGATC	2 cut(s)	38, 499
AlwNI	CAGNNNCTG	2 cut(s)	80, 568
AoxI	GGCC	2 cut(s)	447, 593
ApaI	GGGCCC	2 cut(s)	451, 597
ApeKI	GCWGC	6 cut(s)	20, 33, 535, 556, 904, 1247
ApoI	RAATTY	1 cut(s)	1144
ArsI	GACNNNNNNTTYG	2 cut(s)	756, 788
Asp700I	GAANNNNTTC	1 cut(s)	810
AspS9I	GGNCC	6 cut(s)	229, 447, 448, 593, 594, 744
AsuHPI	GGTGA	3 cut(s)	269, 321, 1025
AvaII	GGWCC	2 cut(s)	229, 744
BaeGI	GKGCMC	2 cut(s)	451, 597
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	5 cut(s)	174, 451, 462, 597, 879
Bbv12I	GWGCWC	4 cut(s)	174, 375, 762, 879
BbvI	GCAGC	6 cut(s)	7, 45, 543, 547, 891, 1259
BccI	CCATC	2 cut(s)	472, 1125
BciT130I	CCWGG	2 cut(s)	413, 429
BclI	TGATCA	1 cut(s)	1021
BcoDI	GTCTC	5 cut(s)	218, 266, 484, 972, 1050
BfmI	CTRYAG	3 cut(s)	21, 31, 843
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	8 cut(s)	21, 34, 474, 536, 539, 557, 905, 1248
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	8 cut(s)	22, 35, 475, 537, 540, 558, 906, 1249
Bme1390I	CCNGG	2 cut(s)	413, 429
Bme18I	GGWCC	2 cut(s)	229, 744
BmeRI	GACNNNNNGTC	1 cut(s)	783
BmgT120I	GGNCC	6 cut(s)	229, 447, 448, 593, 594, 744
BmiI	GGNNCC	7 cut(s)	28, 448, 449, 459, 595, 745, 813
BmrFI	CCNGG	2 cut(s)	413, 429
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	878
Bpu1102I	GCTNAGC	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	577
BsaAI	YACGTR	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	159, 198, 412, 427, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	6 cut(s)	256, 467, 468, 469, 602, 603
Bse1I	ACTGG	1 cut(s)	597
Bse3DI	GCAATG	3 cut(s)	43, 628, 1206
BseBI	CCWGG	2 cut(s)	413, 429
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	5 cut(s)	159, 198, 412, 427, 428
BseLI	CCNNNNNNNGG	6 cut(s)	256, 467, 468, 469, 602, 603
BseMI	GCAATG	3 cut(s)	43, 628, 1206
BseMII	CTCAG	6 cut(s)	355, 747, 892, 948, 1040, 1077
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	5 cut(s)	89, 352, 373, 952, 1066
BseSI	GKGCMC	2 cut(s)	451, 597
BseXI	GCAGC	6 cut(s)	7, 45, 543, 547, 891, 1259
BshFI	GGCC	2 cut(s)	449, 595
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	577
BsiHKAI	GWGCWC	4 cut(s)	174, 375, 762, 879
BsiSI	CCGG	1 cut(s)	975
BslFI	GGGAC	3 cut(s)	308, 550, 757
BslI	CCNNNNNNNGG	6 cut(s)	256, 467, 468, 469, 602, 603
BsmAI	GTCTC	5 cut(s)	218, 266, 484, 972, 1050
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	3 cut(s)	308, 550, 757
BsnI	GGCC	2 cut(s)	449, 595
Bso31I	GGTCTC	1 cut(s)	484
Bsp120I	GGGCCC	2 cut(s)	447, 593
Bsp1286I	GDGCHC	7 cut(s)	174, 375, 451, 462, 597, 762, 879
Bsp143I	GATC	4 cut(s)	43, 504, 832, 1021
Bsp1720I	GCTNAGC	1 cut(s)	341
Bsp19I	CCATGG	2 cut(s)	159, 198
BspACI	CCGC	5 cut(s)	195, 473, 476, 527, 539
BspANI	GGCC	2 cut(s)	449, 595
BspCNI	CTCAG	6 cut(s)	354, 748, 891, 949, 1041, 1078
BspDI	ATCGAT	1 cut(s)	577
BspHI	TCATGA	2 cut(s)	133, 1024
BspLI	GGNNCC	7 cut(s)	28, 448, 449, 459, 595, 745, 813
BspMAI	CTGCAG	2 cut(s)	25, 35
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	2 cut(s)	38, 499
BspQI	GCTCTTC	2 cut(s)	162, 633
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	3 cut(s)	43, 628, 1206
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	5 cut(s)	159, 198, 412, 427, 428
BssMI	GATC	4 cut(s)	43, 504, 832, 1021
BssNAI	GTATAC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	159, 198
Bst1107I	GTATAC	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	413, 429
Bst4CI	ACNGT	3 cut(s)	14, 889, 1154
Bst6I	CTCTTC	7 cut(s)	162, 370, 487, 633, 703, 709, 715
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	6 cut(s)	341, 756, 878, 957, 1049, 1086
BstDSI	CCRYGG	2 cut(s)	159, 198
BstEII	GGTNACC	1 cut(s)	1013
BstKTI	GATC	4 cut(s)	46, 507, 835, 1024
BstMAI	GTCTC	5 cut(s)	218, 266, 484, 972, 1050
BstMBI	GATC	4 cut(s)	43, 504, 832, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 526, 535, 904
BstNI	CCWGG	2 cut(s)	413, 429
BstPI	GGTNACC	1 cut(s)	1013
BstSCI	CCNGG	2 cut(s)	411, 427
BstSFI	CTRYAG	3 cut(s)	21, 31, 843
BstSLI	GKGCMC	2 cut(s)	451, 597
BstV1I	GCAGC	6 cut(s)	7, 45, 543, 547, 891, 1259
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	792
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	449, 595
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	2 cut(s)	159, 198
BtsIMutI	CAGTG	1 cut(s)	1083
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	2 cut(s)	80, 568
CciI	TCATGA	2 cut(s)	133, 1024
Cfr13I	GGNCC	6 cut(s)	229, 447, 448, 593, 594, 744
ClaI	ATCGAT	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 571, 606
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	6 cut(s)	341, 756, 878, 957, 1049, 1086
DpnI	GATC	4 cut(s)	45, 506, 834, 1023
DpnII	GATC	4 cut(s)	43, 504, 832, 1021
DriI	GACNNNNNGTC	1 cut(s)	783
Eam1104I	CTCTTC	7 cut(s)	162, 370, 487, 633, 703, 709, 715
Eam1105I	GACNNNNNGTC	1 cut(s)	783
EarI	CTCTTC	7 cut(s)	162, 370, 487, 633, 703, 709, 715
Ecl136II	GAGCTC	2 cut(s)	172, 877
Eco130I	CCWWGG	2 cut(s)	159, 198
Eco24I	GRGCYC	5 cut(s)	174, 451, 462, 597, 879
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	229, 744
Eco53kI	GAGCTC	2 cut(s)	172, 877
Eco57I	CTGAAG	3 cut(s)	545, 920, 1110
Eco91I	GGTNACC	1 cut(s)	1013
EcoICRI	GAGCTC	2 cut(s)	172, 877
EcoO109I	RGGNCCY	2 cut(s)	447, 448
EcoO65I	GGTNACC	1 cut(s)	1013
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	2 cut(s)	411, 427
EcoT14I	CCWWGG	2 cut(s)	159, 198
EcoT38I	GRGCYC	5 cut(s)	174, 451, 462, 597, 879
ErhI	CCWWGG	2 cut(s)	159, 198
Esp3I	CGTCTC	1 cut(s)	218
FaqI	GGGAC	3 cut(s)	308, 550, 757
FbaI	TGATCA	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	8 cut(s)	21, 34, 474, 536, 539, 557, 905, 1248
FriOI	GRGCYC	5 cut(s)	174, 451, 462, 597, 879
Fsp4HI	GCNGC	8 cut(s)	21, 34, 474, 536, 539, 557, 905, 1248
GluI	GCNGC	8 cut(s)	21, 34, 474, 536, 539, 557, 905, 1248
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	449, 595
HapII	CCGG	1 cut(s)	975
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	5 cut(s)	77, 274, 771, 817, 1043
HpaII	CCGG	1 cut(s)	975
HphI	GGTGA	3 cut(s)	269, 321, 1025
Hpy166II	GTNNAC	4 cut(s)	10, 753, 792, 1133
Hpy188I	TCNGA	4 cut(s)	76, 816, 832, 1050
Hpy188III	TCNNGA	6 cut(s)	134, 775, 880, 1025, 1094, 1232
Hpy8I	GTNNAC	4 cut(s)	10, 753, 792, 1133
HpyAV	CCTTC	2 cut(s)	403, 1175
HpyCH4III	ACNGT	3 cut(s)	14, 889, 1154
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	5 cut(s)	23, 33, 313, 1199, 1247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 526, 535, 904
HpyF3I	CTNAG	6 cut(s)	341, 756, 878, 957, 1049, 1086
HpySE526I	ACGT	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	4 cut(s)	43, 504, 832, 1021
LguI	GCTCTTC	2 cut(s)	162, 633
LmnI	GCTCC	4 cut(s)	378, 457, 553, 939
Lsp1109I	GCAGC	6 cut(s)	7, 45, 543, 547, 891, 1259
LweI	GCATC	1 cut(s)	844
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	995, 1013, 1101
MalI	GATC	4 cut(s)	45, 506, 834, 1023
MboI	GATC	4 cut(s)	43, 504, 832, 1021
MfeI	CAATTG	1 cut(s)	656
MhlI	GDGCHC	7 cut(s)	174, 375, 451, 462, 597, 762, 879
MluCI	AATT	9 cut(s)	178, 204, 212, 233, 289, 656, 806, 1144, 1251
MlyI	GAGTC	3 cut(s)	268, 780, 1052
MmeI	TCCRAC	2 cut(s)	845, 1059
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	197, 1172
MspI	CCGG	1 cut(s)	975
MspR9I	CCNGG	2 cut(s)	413, 429
MunI	CAATTG	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	413, 429
MwoI	GCNNNNNNNGC	4 cut(s)	26, 526, 535, 904
NcoI	CCATGG	2 cut(s)	159, 198
NdeII	GATC	4 cut(s)	43, 504, 832, 1021
NlaIV	GGNNCC	7 cut(s)	28, 448, 449, 459, 595, 745, 813
NmuCI	GTSAC	1 cut(s)	1013
PagI	TCATGA	2 cut(s)	133, 1024
PaqCI	CACCTGC	1 cut(s)	14
PasI	CCCWGGG	1 cut(s)	428
PciSI	GCTCTTC	2 cut(s)	162, 633
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	77, 817
PkrI	GCNGC	8 cut(s)	22, 35, 475, 537, 540, 558, 906, 1249
PleI	GAGTC	3 cut(s)	268, 779, 1051
PpsI	GAGTC	3 cut(s)	268, 779, 1051
Ppu21I	YACGTR	1 cut(s)	7
Psp124BI	GAGCTC	2 cut(s)	174, 879
Psp6I	CCWGG	2 cut(s)	411, 427
PspEI	GGTNACC	1 cut(s)	1013
PspGI	CCWGG	2 cut(s)	411, 427
PspN4I	GGNNCC	7 cut(s)	28, 448, 449, 459, 595, 745, 813
PspOMI	GGGCCC	2 cut(s)	447, 593
PspPI	GGNCC	6 cut(s)	229, 447, 448, 593, 594, 744
PstI	CTGCAG	2 cut(s)	25, 35
PstNI	CAGNNNCTG	2 cut(s)	80, 568
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	197, 1172
SacI	GAGCTC	2 cut(s)	174, 879
SapI	GCTCTTC	2 cut(s)	162, 633
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	8 cut(s)	21, 34, 474, 536, 539, 557, 905, 1248
Sau3AI	GATC	4 cut(s)	43, 504, 832, 1021
Sau96I	GGNCC	6 cut(s)	229, 447, 448, 593, 594, 744
SchI	GAGTC	3 cut(s)	268, 780, 1052
ScrFI	CCNGG	2 cut(s)	413, 429
SduI	GDGCHC	7 cut(s)	174, 375, 451, 462, 597, 762, 879
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	3 cut(s)	21, 31, 843
SinI	GGWCC	2 cut(s)	229, 744
SmiMI	CAYNNNNRTG	2 cut(s)	197, 1172
Sse9I	AATT	9 cut(s)	178, 204, 212, 233, 289, 656, 806, 1144, 1251
SsiI	CCGC	5 cut(s)	195, 473, 476, 527, 539
SstI	GAGCTC	2 cut(s)	174, 879
StyD4I	CCNGG	2 cut(s)	411, 427
StyI	CCWWGG	2 cut(s)	159, 198
TaaI	ACNGT	3 cut(s)	14, 889, 1154
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	577, 835, 1224
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	9 cut(s)	178, 204, 212, 233, 289, 656, 806, 1144, 1251
TauI	GCSGC	2 cut(s)	476, 541
TfiI	GAWTC	2 cut(s)	77, 817
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	1090
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	6 cut(s)	20, 33, 535, 556, 904, 1247
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	7 cut(s)	150, 321, 710, 1016, 1047, 1137, 1194
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	1090
VpaK11BI	GGWCC	2 cut(s)	229, 744
XapI	RAATTY	1 cut(s)	1144
XmiI	GTMKAC	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.