pycom02g20570

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
18653087 .. 18654791
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20570.2

Sequence Viewer

Length: 1497 bp
ATGTATCAAGACACAGTAGCATGCGACTTTGACCCAAACTCCATCCCTGAATCTGCAGCAGAGAGCGTGCTCGACCTCAACCCTCTTCCCCCACAACCACCGCCACAACAACCACCACAAGTTCTCATGCCTTCGTCAGACACCACCCACCACCACAACACCACCACCCCCGGCTTTGGTGTCGAAGCAAACATCAGACTCTCCATGGAAGAGCCTTCTTATCATCCTCACCATCACCAATATCATCATTCCTCCATGGAAATCGAGCTCCAAAACGAACTTGGGTTCAGTGTCGATAACTCATACACCACCAATACTGACCATAACAACAACATCAACAATTCCCATTTGGTGTCTTTTGAGCACCCAACAAATTGGGACACCACCAATATTCAAGGCGTTCATGATCAGATGCAGCAACAATTCCCAGATGGTACTACTTCTGCTACTTGTACTCTATACCCACAACCACCTGACCTTCTCAACCTTTTCAGCTTACCCAGATGCTCCCCCTCCTCTCTTCTCCAAAACTCATCCATCACCTTCACAAATCCCCTCCCAAAAACCTCGAATTTTCCGAGCTCTTTTGGGCTCCTTGGAGACCTCCCCAGCGCGGTTGACACCCCACACGGGACGCCTTCTTCCGTCCTCTATGACCCGCTTCTCCACTTGAACCTCCCTCCACAGCCGCCATTATTCAGGGAGTTGCTTCAGTCCCTGCCGCATGGGTACGCCTTACCTGGCTCAGGAAACGGATCGGTGTTCAGTAGCGGCGGCGATGACAGAGAGGGAAGCGGAGGAGGAGTTCTGTATGACCCAGATGGGAGTCTTGGGAGGCAGTTTGATAGCGGAGTTTTGAAGTTCTCAAGAGATATGGCTTCTAATGGGATAGGAAGAGATCTCAAAAGGACCAAACACTTTGCTACCGAGCGCCAAAGGAGACAGCAATTGAATGGCAAGTACGATATCTTGAAGAATTTGGTTCCAAACCCAACAAAGAATGATAGAGCATCAATTGTGGGAGATGCAATTGAATACATAAACGAGCTTCTGAGGACAGTGGAAGAGCTTAAACTGCTGGTCGAGAAGAAAAGGTGTGGGAGAGAAAAGATCAAGAGGCACAGGACTGAGCATGATGGCGCTGCCGCCGCTGCAGATGACGAGAGCTGCAACATTCAGCCTCTTGGTGAGCCTCATGACCAGTCCTACAACAATGGCTCTCTGCGGAGCTCGTGGCTGCAAAGGAAATCCAAAGACACCGAGGTTGATATCCGCATTGTCGACGATGAAGTTACCATTAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGTTGTTTGTGTCCAGGCTTCTGGATGAGCTGCAGCTTGATCTTCATCATGTTGCTGGTGGCCACATTGGCAATTCCTACAGCTTCTTCTTCAATACCAAGGTTTGTTTTTCTTTCTTTTATGAGATCAATTCAAACTTCGTTAACAAGGATCAAGAACGTACGTAG

Protein Analysis

499

Amino Acids

55.61

Weight (kDa)

5.59

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1281
AccII CGCG 1 cut(s) 614
AclWI GGATC 2 cut(s) 763, 1488
AcoI YGGCCR 1 cut(s) 1390
AcsI RAATTY 2 cut(s) 571, 976
AcuI CTGAAG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 635
AfaI GTAC 5 cut(s) 436, 454, 731, 962, 1492
AfiI CCNNNNNNNGG 4 cut(s) 176, 613, 630, 746
AgsI TTSAA 8 cut(s) 395, 673, 859, 952, 973, 1034, 1423, 1464
AjnI CCWGG 2 cut(s) 739, 1343
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
Alw21I GWGCWC 5 cut(s) 72, 270, 366, 584, 1232
Alw26I GTCTC 2 cut(s) 594, 934
AlwI GGATC 2 cut(s) 763, 1488
AlwNI CAGNNNCTG 1 cut(s) 718
AoxI GGCC 1 cut(s) 1390
ApeKI GCWGC 8 cut(s) 56, 415, 1142, 1151, 1167, 1237, 1360, 1363
ApoI RAATTY 2 cut(s) 571, 976
AspLEI GCGC 3 cut(s) 614, 933, 1142
AspS9I GGNCC 1 cut(s) 909
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 4 cut(s) 221, 227, 532, 1199
AvaII GGWCC 1 cut(s) 909
BalI TGGCCA 1 cut(s) 1392
BanII GRGCYC 4 cut(s) 270, 584, 594, 1232
BauI CACGAG 1 cut(s) 1231
Bbv12I GWGCWC 5 cut(s) 72, 270, 366, 584, 1232
BbvI GCAGC 8 cut(s) 68, 427, 1129, 1138, 1154, 1224, 1347, 1375
BccI CCATC 6 cut(s) 50, 240, 425, 545, 815, 1130
BciT130I CCWGG 2 cut(s) 741, 1345
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 594, 934
BfmI CTRYAG 4 cut(s) 54, 1152, 1361, 1408
BfoI RGCGCY 2 cut(s) 934, 1143
BglI GCCNNNNNGGC 1 cut(s) 1398
BglII AGATCT 1 cut(s) 898
Bme1390I CCNGG 3 cut(s) 171, 741, 1345
Bme18I GGWCC 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 2 cut(s) 593, 984
BmrFI CCNGG 3 cut(s) 171, 741, 1345
BmsI GCATC 4 cut(s) 402, 494, 1015, 1019
Bpu10I CCTNAGC 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 850
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 1494
BsaBI GATNNNNATC 1 cut(s) 1374
BsaHI GRCGYC 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 6 cut(s) 169, 204, 255, 595, 1260, 1428
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 789, 819
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 613, 630, 746
Bse1I ACTGG 2 cut(s) 1201, 1308
Bse8I GATNNNNATC 1 cut(s) 1374
BseBI CCWGG 2 cut(s) 741, 1345
BseDI CCNNGG 6 cut(s) 169, 204, 255, 595, 1260, 1428
BseGI GGATG 4 cut(s) 42, 223, 533, 1360
BseJI GATNNNNATC 1 cut(s) 1374
BseLI CCNNNNNNNGG 4 cut(s) 176, 613, 630, 746
BseMII CTCAG 3 cut(s) 759, 1043, 1119
BseNI ACTGG 2 cut(s) 1201, 1308
BseRI GAGGAG 3 cut(s) 505, 813, 816
BseXI GCAGC 8 cut(s) 68, 427, 1129, 1138, 1154, 1224, 1347, 1375
BseYI CCCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 1328
Bsh1236I CGCG 1 cut(s) 614
BshFI GGCC 1 cut(s) 1392
BsiHKAI GWGCWC 5 cut(s) 72, 270, 366, 584, 1232
BsiSI CCGG 1 cut(s) 171
BsiWI CGTACG 1 cut(s) 1490
BslFI GGGAC 3 cut(s) 392, 646, 700
BslI CCNNNNNNNGG 4 cut(s) 176, 613, 630, 746
BsmAI GTCTC 2 cut(s) 594, 934
BsmFI GGGAC 3 cut(s) 392, 646, 700
BsnI GGCC 1 cut(s) 1392
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 6 cut(s) 72, 270, 366, 584, 594, 1232
Bsp143I GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
Bsp19I CCATGG 2 cut(s) 204, 255
BspANI GGCC 1 cut(s) 1392
BspCNI CTCAG 3 cut(s) 758, 1044, 1120
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 2 cut(s) 403, 1195
BspLI GGNNCC 2 cut(s) 593, 984
BspMAI CTGCAG 3 cut(s) 58, 1156, 1365
BspPI GGATC 2 cut(s) 763, 1488
BspQI GCTCTTC 2 cut(s) 204, 1059
BspTNI GGTCTC 1 cut(s) 594
BsrI ACTGG 2 cut(s) 1201, 1308
BssECI CCNNGG 6 cut(s) 169, 204, 255, 595, 1260, 1428
BssMI GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
BssNI GRCGYC 1 cut(s) 635
BssSI CACGAG 1 cut(s) 1231
BssT1I CCWWGG 4 cut(s) 204, 255, 595, 1428
Bst2BI CACGAG 1 cut(s) 1231
Bst2UI CCWGG 2 cut(s) 741, 1345
Bst4CI ACNGT 2 cut(s) 16, 1060
Bst6I CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
BstACI GRCGYC 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 1494
BstC8I GCNNGC 2 cut(s) 22, 68
BstDEI CTNAG 3 cut(s) 745, 1052, 1128
BstDSI CCRYGG 2 cut(s) 204, 255
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 4 cut(s) 42, 223, 533, 1360
BstFNI CGCG 1 cut(s) 614
BstH2I RGCGCY 2 cut(s) 934, 1143
BstHHI GCGC 3 cut(s) 614, 933, 1142
BstKTI GATC 8 cut(s) 409, 758, 901, 1113, 1323, 1372, 1458, 1483
BstMAI GTCTC 2 cut(s) 594, 934
BstMBI GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
BstMWI GCNNNNNNNGC 4 cut(s) 1075, 1148, 1151, 1398
BstNI CCWGG 2 cut(s) 741, 1345
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 3 cut(s) 169, 739, 1343
BstSFI CTRYAG 4 cut(s) 54, 1152, 1361, 1408
BstSNI TACGTA 1 cut(s) 1494
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 8 cut(s) 68, 427, 1129, 1138, 1154, 1224, 1347, 1375
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 3 cut(s) 375, 1303, 1351
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 1 cut(s) 1392
BtgI CCRYGG 2 cut(s) 204, 255
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 4 cut(s) 42, 223, 533, 1360
BtsIMutI CAGTG 2 cut(s) 295, 1065
Cac8I GCNNGC 2 cut(s) 22, 68
CaiI CAGNNNCTG 1 cut(s) 718
CciI TCATGA 2 cut(s) 403, 1195
CfoI GCGC 3 cut(s) 614, 933, 1142
Cfr13I GGNCC 1 cut(s) 909
CseI GACGC 1 cut(s) 643
Csp6I GTAC 5 cut(s) 435, 453, 730, 961, 1491
CviAII CATG 9 cut(s) 21, 127, 205, 256, 404, 725, 1133, 1196, 1379
CviQI GTAC 5 cut(s) 435, 453, 730, 961, 1491
DdeI CTNAG 3 cut(s) 745, 1052, 1128
DpnI GATC 8 cut(s) 408, 757, 900, 1112, 1322, 1371, 1457, 1482
DpnII GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
EaeI YGGCCR 1 cut(s) 1390
Eam1104I CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
EarI CTCTTC 5 cut(s) 90, 204, 525, 889, 1059
Ecl136II GAGCTC 3 cut(s) 268, 582, 1230
Eco105I TACGTA 1 cut(s) 1494
Eco130I CCWWGG 4 cut(s) 204, 255, 595, 1428
Eco24I GRGCYC 4 cut(s) 270, 584, 594, 1232
Eco31I GGTCTC 1 cut(s) 594
Eco32I GATATC 2 cut(s) 967, 1270
Eco47I GGWCC 1 cut(s) 909
Eco53kI GAGCTC 3 cut(s) 268, 582, 1230
Eco57I CTGAAG 1 cut(s) 695
EcoICRI GAGCTC 3 cut(s) 268, 582, 1230
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 739, 1343
EcoRV GATATC 2 cut(s) 967, 1270
EcoT14I CCWWGG 4 cut(s) 204, 255, 595, 1428
EcoT38I GRGCYC 4 cut(s) 270, 584, 594, 1232
ErhI CCWWGG 4 cut(s) 204, 255, 595, 1428
FaeI CATG 9 cut(s) 24, 130, 208, 259, 407, 728, 1136, 1199, 1382
FaqI GGGAC 3 cut(s) 392, 646, 700
FatI CATG 9 cut(s) 20, 126, 204, 255, 403, 724, 1132, 1195, 1378
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 1281
FokI GGATG 4 cut(s) 29, 210, 520, 1367
FriOI GRGCYC 4 cut(s) 270, 584, 594, 1232
GlaI GCGC 3 cut(s) 613, 932, 1141
GsaI CCCAGC 1 cut(s) 612
HaeII RGCGCY 2 cut(s) 934, 1143
HaeIII GGCC 1 cut(s) 1392
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 643
HhaI GCGC 3 cut(s) 614, 933, 1142
Hin1I GRCGYC 1 cut(s) 635
Hin1II CATG 9 cut(s) 24, 130, 208, 259, 407, 728, 1136, 1199, 1382
Hin6I GCGC 3 cut(s) 612, 931, 1140
HinP1I GCGC 3 cut(s) 612, 931, 1140
HincII GTYRAC 3 cut(s) 619, 1282, 1474
HindII GTYRAC 3 cut(s) 619, 1282, 1474
HinfI GANTC 3 cut(s) 50, 198, 826
HpaI GTTAAC 1 cut(s) 1474
HpaII CCGG 1 cut(s) 171
HphI GGTGA 4 cut(s) 221, 227, 532, 1199
Hpy166II GTNNAC 3 cut(s) 619, 1282, 1474
Hpy188I TCNGA 5 cut(s) 139, 197, 411, 579, 1053
Hpy8I GTNNAC 3 cut(s) 619, 1282, 1474
Hpy99I CGWCG 1 cut(s) 1286
HpyAV CCTTC 5 cut(s) 141, 225, 488, 553, 648
HpyCH4III ACNGT 2 cut(s) 16, 1060
HpyCH4IV ACGT 2 cut(s) 1489, 1493
HpyCH4V TGCA 8 cut(s) 56, 415, 1028, 1154, 1170, 1240, 1309, 1363
HpyF10VI GCNNNNNNNGC 4 cut(s) 1075, 1148, 1151, 1398
HpyF3I CTNAG 3 cut(s) 745, 1052, 1128
HpySE526I ACGT 2 cut(s) 1489, 1493
Hsp92I GRCGYC 1 cut(s) 635
Hsp92II CATG 9 cut(s) 24, 130, 208, 259, 407, 728, 1136, 1199, 1382
HspAI GCGC 3 cut(s) 612, 931, 1140
Ksp22I TGATCA 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 1474
Kzo9I GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
LguI GCTCTTC 2 cut(s) 204, 1059
LmnI GCTCC 4 cut(s) 273, 512, 597, 1227
Lsp1109I GCAGC 8 cut(s) 68, 427, 1129, 1138, 1154, 1224, 1347, 1375
LweI GCATC 4 cut(s) 402, 494, 1015, 1019
MaeII ACGT 2 cut(s) 1489, 1493
MaeIII GTNAC 1 cut(s) 1291
MalI GATC 8 cut(s) 408, 757, 900, 1112, 1322, 1371, 1457, 1482
MboI GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
MfeI CAATTG 3 cut(s) 947, 1014, 1029
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 6 cut(s) 72, 270, 366, 584, 594, 1232
MlsI TGGCCA 1 cut(s) 1392
MluNI TGGCCA 1 cut(s) 1392
MlyI GAGTC 2 cut(s) 192, 835
Mox20I TGGCCA 1 cut(s) 1392
MscI TGGCCA 1 cut(s) 1392
MseI TTAA 3 cut(s) 1071, 1299, 1473
Msp20I TGGCCA 1 cut(s) 1392
MspA1I CMGCKG 1 cut(s) 1151
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 171, 741, 1345
MunI CAATTG 3 cut(s) 947, 1014, 1029
MvaI CCWGG 2 cut(s) 741, 1345
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 4 cut(s) 1075, 1148, 1151, 1398
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 2 cut(s) 204, 255
NdeII GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
NlaIII CATG 9 cut(s) 24, 130, 208, 259, 407, 728, 1136, 1199, 1382
NlaIV GGNNCC 2 cut(s) 593, 984
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 2 cut(s) 403, 1195
PciSI GCTCTTC 2 cut(s) 204, 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 1 cut(s) 50
Pfl23II CGTACG 1 cut(s) 1490
PleI GAGTC 2 cut(s) 192, 834
PpsI GAGTC 2 cut(s) 192, 834
Ppu21I YACGTR 1 cut(s) 1494
Psp124BI GAGCTC 3 cut(s) 270, 584, 1232
Psp6I CCWGG 2 cut(s) 739, 1343
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 739, 1343
PspLI CGTACG 1 cut(s) 1490
PspN4I GGNNCC 2 cut(s) 593, 984
PspPI GGNCC 1 cut(s) 909
PstI CTGCAG 3 cut(s) 58, 1156, 1365
PstNI CAGNNNCTG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 5 cut(s) 436, 454, 731, 962, 1492
RsaNI GTAC 5 cut(s) 435, 453, 730, 961, 1491
SacI GAGCTC 3 cut(s) 270, 584, 1232
SalI GTCGAC 1 cut(s) 1280
SapI GCTCTTC 2 cut(s) 204, 1059
SaqAI TTAA 3 cut(s) 1071, 1299, 1473
Sau3AI GATC 8 cut(s) 406, 755, 898, 1110, 1320, 1369, 1455, 1480
Sau96I GGNCC 1 cut(s) 909
SchI GAGTC 2 cut(s) 192, 835
ScrFI CCNGG 3 cut(s) 171, 741, 1345
SduI GDGCHC 6 cut(s) 72, 270, 366, 584, 594, 1232
SfaNI GCATC 4 cut(s) 402, 494, 1015, 1019
SfcI CTRYAG 4 cut(s) 54, 1152, 1361, 1408
SinI GGWCC 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
SnaBI TACGTA 1 cut(s) 1494
SphI GCATGC 1 cut(s) 24
SspI AATATT 1 cut(s) 391
SstI GAGCTC 3 cut(s) 270, 584, 1232
StyD4I CCNGG 3 cut(s) 169, 739, 1343
StyI CCWWGG 4 cut(s) 204, 255, 595, 1428
TaaI ACNGT 2 cut(s) 16, 1060
TaiI ACGT 2 cut(s) 1492, 1496
TaqI TCGA 7 cut(s) 72, 183, 264, 294, 569, 1083, 1281
TatI WGTACW 1 cut(s) 452
TauI GCSGC 6 cut(s) 691, 724, 774, 777, 1148, 1151
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 3 cut(s) 1071, 1299, 1473
Tru9I TTAA 3 cut(s) 1071, 1299, 1473
TscAI CASTG 2 cut(s) 295, 1065
TseI GCWGC 8 cut(s) 56, 415, 1142, 1151, 1167, 1237, 1360, 1363
TspDTI ATGAA 3 cut(s) 392, 1302, 1364
TspGWI ACGGA 2 cut(s) 634, 768
TspRI CASTG 2 cut(s) 295, 1065
VpaK11BI GGWCC 1 cut(s) 909
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 2 cut(s) 571, 976
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.