Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

22114950 .. 22115514

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0130300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCATATGTGGTGAAAGCAGCTAGTACTGAACTGAGCACTGAAGACCAAGTCATTCAATTTGTTGCCGGCCAGGTGGCCCCCTACAAAAAAGTCAGAAAAGTAGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTTGAGGAAGGAACTTGTTAGTTTACAAAGCAAACAGCAAATGGTCTCCAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

10.28

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	23, 134
AluI	AGCT	2 cut(s)	23, 134
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	70, 78
ApeKI	GCWGC	2 cut(s)	20, 134
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	32, 121
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	21, 135
BlsI	GCNGC	2 cut(s)	22, 136
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	32, 121
BshFI	GGCC	2 cut(s)	72, 80
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	72, 80
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	72, 80
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	70, 139
BstDEI	CTNAG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	32, 121
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	72, 80
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	70, 139
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	4 cut(s)	23, 72, 80, 134
CviKI_1	RGCY	4 cut(s)	23, 72, 80, 134
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	72
FaiI	YATR	4 cut(s)	7, 9, 113, 202
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	21, 135
Fsp4HI	GCNGC	2 cut(s)	21, 135
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	21, 135
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	72, 80
HapII	CCGG	1 cut(s)	69
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	148, 195
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	128
LpnPI	CCDG	3 cut(s)	59, 82, 86
Lsp1109I	GCAGC	2 cut(s)	32, 121
MaeI	CTAG	1 cut(s)	24
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	59
MnlI	CCTC	1 cut(s)	144
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	1 cut(s)	128
NgoMIV	GCCGGC	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	22, 136
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	21, 135
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	3 cut(s)	25, 78, 136
SgeI	CNNG	9 cut(s)	36, 62, 81, 85, 86, 138, 150, 160, 173
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	59
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	72
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	26
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	20, 134
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.