Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Reverse (-)

36390051 .. 36392611

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAAAAACGAAGGGAGGAAGGTGCAAACTTCACGCAGGGAGGGCCAGAATCAAGAATTTCAGAATGAGGAGATTCAAATTTCATCTAAAGCACACAGAAAAATCAACAAGAGTACAAGACCCATCAACTCCATAAAGCCAAAAATGTACGTGGACAGTACTAGTGCTGCAGCTGCCTGCAACTTTGATCCCAGTACTAATAACCCCATGTCAGAATCAGCCCCAGAAGTTGTCCTCCACAGCCACAACACCACCACCACCTTTGCTCATGGAGAAAACTTGAGGAGGCTCTCCATGGAAGAAGAGCTCTCTAACTACCACCACAACGCCGCCATGGAAATTGAGCAGCAGCTTCAGAATGAGATGGATTTTGGCACCATGGACCAAAACACTACCCCCAACCCTCATTTGGTTAACCCCTTTGACACCCACCAAGCCACAAACTGGGACACTAGTAATGAAATGCAACAGCAATTGCGCGCACAAGGCCCAACACCTGACCTACTCAGCCTTTTCCACTTGCCCTCCTCTTCTGTGCTCCCACACTCCTCCATTAACTTCACCAATCCCAAGAGCCCGGGAGCCTGTTTCCCGGAGTCTTTCGGGTACGAGACCCTGCCCGAGACCCCGTCTGGGGCGGCGGCCTCTTCGGTGATGTATGACCCAATGTTCCACCTGAACCAGCTGCCTCCGCAGCCGCAGCCACCGCTGTTCAGGGAGCTGCTGCAGTCCCTGCCGCATGGGTACAACTTGGGTGGGTCCAGAAATGGGTCGAGCTTGTTTAGCAATGGTGGGGATGAGGTGGACGATGGGAGTAGGCAGTTGTTTGAGAATGGGGTGCTGGAGTTTTCTAAGGAGATGAAGCCATTTGGAAGAGGAAGAGGTGGGAATAAAGGGACCAAGCACTTTGCTACTGAGCGCCAAAGGAGAGTCCAGCTTAATGACAAGTTTCATGCTTTGAGGGAATTGGTTCCAAACCCAACAAAGCCTGATCGAGCATCTGTAGTGGGAGATGCCATTGATTACATACAGGAGCTCAAGAGGACTGTGAGTGAGCTGAAACTGCTGGTGGAGAAGAAAAGGTGTGGTAGAGAGAGGAGCAAGAGGCACAAGACTGAGCAGGACATAGGTGCTGGAGACGATGATGAGAGCTGTAACATGAAGCCTCTTGCTGACCATGATCATGACCACTCCTACAACAATGGGTCTCTGAGGAGCTCATGGCTTCAAAGGAAGTCCAAAGACACCGAGGTTGACGTCCGGATCATTGATGATGAAGTCACCATCAAACTGGTCCAGAGGAAGAAGATCAATCTGTTGCTGTCTGTGTCCAAGCTTCTTGATGAGTTGCAGCTTGAACTTCATCATGCTGCTGGGGGACACATTGGGAATTCATACAGCTTCTTGTTCAACACCAAGATGTATGAAGGGTCTTCTTTGTATGCAAGTGCCATTGCCAACAAGCTCATTGAGACTTTGGATAGACAATATGCAGCAATTCCACCTACCAATAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

507

Amino Acids

56.83

Weight (kDa)

6.24

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	300 - 347	1.9e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1260
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccII	CGCG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	1260
AciI	CCGC	7 cut(s)	330, 638, 641, 692, 698, 707, 737
AclWI	GGATC	2 cut(s)	182, 1271
AcsI	RAATTY	3 cut(s)	56, 78, 1390
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	1257
AfaI	GTAC	6 cut(s)	115, 149, 160, 196, 608, 746
AfiI	CCNNNNNNNGG	5 cut(s)	409, 444, 633, 634, 768
AgsI	TTSAA	4 cut(s)	77, 1229, 1358, 1411
AhlI	ACTAGT	2 cut(s)	161, 452
Alw21I	GWGCWC	4 cut(s)	309, 540, 1038, 1220
Alw26I	GTCTC	5 cut(s)	605, 617, 1131, 1212, 1466
AlwI	GGATC	2 cut(s)	182, 1271
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	2 cut(s)	577, 620
Aor13HI	TCCGGA	1 cut(s)	1260
AoxI	GGCC	3 cut(s)	43, 487, 642
ApoI	RAATTY	3 cut(s)	56, 78, 1390
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	3 cut(s)	480, 482, 921
AspS9I	GGNCC	6 cut(s)	43, 382, 488, 759, 897, 1294
AsuC2I	CCSGG	3 cut(s)	578, 579, 593
AsuHPI	GGTGA	3 cut(s)	553, 664, 1273
AvaI	CYCGRG	2 cut(s)	577, 620
AvaII	GGWCC	4 cut(s)	382, 759, 897, 1294
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	4 cut(s)	309, 578, 1038, 1220
BbsI	GAAGAC	1 cut(s)	1425
Bbv12I	GWGCWC	4 cut(s)	309, 540, 1038, 1220
BccI	CCATC	4 cut(s)	131, 358, 803, 1292
BclI	TGATCA	1 cut(s)	1180
BcnI	CCSGG	3 cut(s)	578, 579, 593
BcoDI	GTCTC	5 cut(s)	605, 617, 1131, 1212, 1466
BcuI	ACTAGT	2 cut(s)	161, 452
BfaI	CTAG	2 cut(s)	162, 453
BfmI	CTRYAG	3 cut(s)	168, 725, 1002
BfoI	RGCGCY	1 cut(s)	922
BmcAI	AGTACT	2 cut(s)	160, 196
Bme1390I	CCNGG	3 cut(s)	578, 579, 593
Bme18I	GGWCC	4 cut(s)	382, 759, 897, 1294
BmeT110I	CYCGRG	2 cut(s)	577, 620
BmgT120I	GGNCC	6 cut(s)	43, 382, 488, 759, 897, 1294
BmiI	GGNNCC	5 cut(s)	376, 583, 760, 898, 972
BmrFI	CCNGG	3 cut(s)	578, 579, 593
BmrI	ACTGGG	2 cut(s)	186, 454
BmsI	GCATC	2 cut(s)	1003, 1007
BmuI	ACTGGG	2 cut(s)	186, 454
BpiI	GAAGAC	1 cut(s)	1425
BpmI	CTGGAG	2 cut(s)	863, 1155
BpuEI	CTTGAG	2 cut(s)	301, 1022
BpuMI	CCSGG	3 cut(s)	578, 579, 593
BsaAI	YACGTR	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	1257
BsaI	GGTCTC	3 cut(s)	605, 617, 1212
BsaJI	CCNNGG	5 cut(s)	294, 333, 378, 577, 1248
BsaWI	WCCGGW	1 cut(s)	1260
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	5 cut(s)	409, 444, 633, 634, 768
Bse1I	ACTGG	3 cut(s)	192, 449, 1296
Bse3DI	GCAATG	2 cut(s)	793, 1452
BseAI	TCCGGA	1 cut(s)	1260
BseDI	CCNNGG	5 cut(s)	294, 333, 378, 577, 1248
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	5 cut(s)	409, 444, 633, 634, 768
BseMI	GCAATG	2 cut(s)	793, 1452
BseMII	CTCAG	4 cut(s)	520, 906, 1107, 1202
BseNI	ACTGG	3 cut(s)	192, 449, 1296
BsePI	GCGCGC	1 cut(s)	478
BseRI	GAGGAG	6 cut(s)	83, 298, 517, 538, 1111, 1228
BseYI	CCCAGC	1 cut(s)	1373
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	45, 489, 644
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	4 cut(s)	309, 540, 1038, 1220
BsiHKCI	CYCGRG	2 cut(s)	577, 620
BsiSI	CCGG	3 cut(s)	578, 593, 1261
BslFI	GGGAC	4 cut(s)	461, 715, 910, 1392
BslI	CCNNNNNNNGG	5 cut(s)	409, 444, 633, 634, 768
BsmAI	GTCTC	5 cut(s)	605, 617, 1131, 1212, 1466
BsmBI	CGTCTC	1 cut(s)	1131
BsmFI	GGGAC	4 cut(s)	461, 715, 910, 1392
BsnI	GGCC	3 cut(s)	45, 489, 644
Bso31I	GGTCTC	3 cut(s)	605, 617, 1212
BsoBI	CYCGRG	2 cut(s)	577, 620
Bsp1286I	GDGCHC	5 cut(s)	309, 540, 578, 1038, 1220
Bsp13I	TCCGGA	1 cut(s)	1260
Bsp143I	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
Bsp19I	CCATGG	3 cut(s)	294, 333, 378
BspACI	CCGC	7 cut(s)	330, 638, 641, 692, 698, 707, 737
BspANI	GGCC	3 cut(s)	45, 489, 644
BspCNI	CTCAG	4 cut(s)	519, 907, 1108, 1203
BspEI	TCCGGA	1 cut(s)	1260
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	5 cut(s)	376, 583, 760, 898, 972
BspMAI	CTGCAG	2 cut(s)	172, 729
BspPI	GGATC	2 cut(s)	182, 1271
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	374
BspTNI	GGTCTC	3 cut(s)	605, 617, 1212
BsrDI	GCAATG	2 cut(s)	793, 1452
BsrI	ACTGG	3 cut(s)	192, 449, 1296
BssECI	CCNNGG	5 cut(s)	294, 333, 378, 577, 1248
BssHII	GCGCGC	1 cut(s)	478
BssMI	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
BssNI	GRCGYC	1 cut(s)	1257
BssT1I	CCWWGG	3 cut(s)	294, 333, 378
Bst4CI	ACNGT	2 cut(s)	158, 1048
Bst6I	CTCTTC	5 cut(s)	297, 535, 652, 868, 874
BstACI	GRCGYC	1 cut(s)	1257
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	178, 480
BstDEI	CTNAG	5 cut(s)	506, 852, 915, 1116, 1211
BstDSI	CCRYGG	3 cut(s)	294, 333, 378
BstF5I	GGATG	1 cut(s)	802
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	922
BstHHI	GCGC	3 cut(s)	480, 482, 921
BstKTI	GATC	5 cut(s)	190, 994, 1183, 1266, 1311
BstMAI	GTCTC	5 cut(s)	605, 617, 1131, 1212, 1466
BstMBI	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
BstSCI	CCNGG	3 cut(s)	576, 577, 591
BstSFI	CTRYAG	3 cut(s)	168, 725, 1002
BstUI	CGCG	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	1425
BstXI	CCANNNNNNTGG	1 cut(s)	1291
BsuRI	GGCC	3 cut(s)	45, 489, 644
BtgI	CCRYGG	3 cut(s)	294, 333, 378
BtsCI	GGATG	1 cut(s)	802
Cac8I	GCNNGC	2 cut(s)	178, 480
CaiI	CAGNNNCTG	1 cut(s)	733
CciI	TCATGA	1 cut(s)	1183
CfoI	GCGC	3 cut(s)	480, 482, 921
Cfr13I	GGNCC	6 cut(s)	43, 382, 488, 759, 897, 1294
Cfr9I	CCCGGG	1 cut(s)	577
Csp6I	GTAC	6 cut(s)	114, 148, 159, 195, 607, 745
CspCI	CAANNNNNGTGG	4 cut(s)	244, 279, 736, 771
CviQI	GTAC	6 cut(s)	114, 148, 159, 195, 607, 745
DdeI	CTNAG	5 cut(s)	506, 852, 915, 1116, 1211
DpnI	GATC	5 cut(s)	189, 993, 1182, 1265, 1310
DpnII	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
Eam1104I	CTCTTC	5 cut(s)	297, 535, 652, 868, 874
EarI	CTCTTC	5 cut(s)	297, 535, 652, 868, 874
Ecl136II	GAGCTC	3 cut(s)	307, 1036, 1218
Eco130I	CCWWGG	3 cut(s)	294, 333, 378
Eco24I	GRGCYC	4 cut(s)	309, 578, 1038, 1220
Eco31I	GGTCTC	3 cut(s)	605, 617, 1212
Eco47I	GGWCC	4 cut(s)	382, 759, 897, 1294
Eco53kI	GAGCTC	3 cut(s)	307, 1036, 1218
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	577, 620
EcoICRI	GAGCTC	3 cut(s)	307, 1036, 1218
EcoRI	GAATTC	1 cut(s)	1390
EcoT14I	CCWWGG	3 cut(s)	294, 333, 378
EcoT38I	GRGCYC	4 cut(s)	309, 578, 1038, 1220
ErhI	CCWWGG	3 cut(s)	294, 333, 378
Esp3I	CGTCTC	1 cut(s)	1131
FaqI	GGGAC	4 cut(s)	461, 715, 910, 1392
FbaI	TGATCA	1 cut(s)	1180
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	4 cut(s)	309, 578, 1038, 1220
FspBI	CTAG	2 cut(s)	162, 453
GlaI	GCGC	3 cut(s)	479, 481, 920
GsaI	CCCAGC	1 cut(s)	1377
GsuI	CTGGAG	2 cut(s)	863, 1155
HaeII	RGCGCY	1 cut(s)	922
HaeIII	GGCC	3 cut(s)	45, 489, 644
HapII	CCGG	3 cut(s)	578, 593, 1261
HhaI	GCGC	3 cut(s)	480, 482, 921
Hin1I	GRCGYC	1 cut(s)	1257
Hin6I	GCGC	3 cut(s)	478, 480, 919
HinP1I	GCGC	3 cut(s)	478, 480, 919
HincII	GTYRAC	2 cut(s)	415, 1255
HindII	GTYRAC	2 cut(s)	415, 1255
HindIII	AAGCTT	1 cut(s)	1334
HinfI	GANTC	5 cut(s)	49, 73, 215, 596, 930
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	578, 593, 1261
HphI	GGTGA	3 cut(s)	553, 664, 1273
Hpy166II	GTNNAC	4 cut(s)	154, 415, 805, 1255
Hpy188I	TCNGA	4 cut(s)	63, 214, 357, 1212
Hpy188III	TCNNGA	7 cut(s)	53, 762, 1039, 1184, 1261, 1297, 1340
Hpy8I	GTNNAC	4 cut(s)	154, 415, 805, 1255
HpyAV	CCTTC	3 cut(s)	5, 13, 1421
HpyCH4III	ACNGT	2 cut(s)	158, 1048
HpyCH4IV	ACGT	2 cut(s)	150, 1257
HpyCH4V	TGCA	8 cut(s)	25, 170, 180, 466, 727, 1351, 1445, 1493
HpyF3I	CTNAG	5 cut(s)	506, 852, 915, 1116, 1211
HpySE526I	ACGT	2 cut(s)	150, 1257
Hsp92I	GRCGYC	1 cut(s)	1257
HspAI	GCGC	3 cut(s)	478, 480, 919
Kpn2I	TCCGGA	1 cut(s)	1260
Ksp22I	TGATCA	1 cut(s)	1180
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	6 cut(s)	543, 581, 718, 1033, 1098, 1215
LweI	GCATC	2 cut(s)	1003, 1007
MaeI	CTAG	2 cut(s)	162, 453
MaeII	ACGT	2 cut(s)	150, 1257
MaeIII	GTNAC	2 cut(s)	1154, 1279
MalI	GATC	5 cut(s)	189, 993, 1182, 1265, 1310
MboI	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
MfeI	CAATTG	1 cut(s)	473
MhlI	GDGCHC	5 cut(s)	309, 540, 578, 1038, 1220
MluCI	AATT	7 cut(s)	56, 78, 339, 473, 965, 1390, 1497
MlyI	GAGTC	2 cut(s)	605, 939
MroI	TCCGGA	1 cut(s)	1260
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	3 cut(s)	414, 555, 939
MslI	CAYNNNNRTG	2 cut(s)	1182, 1418
MspA1I	CMGCKG	3 cut(s)	173, 685, 709
MspI	CCGG	3 cut(s)	578, 593, 1261
MspR9I	CCNGG	3 cut(s)	578, 579, 593
MunI	CAATTG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	480
NciI	CCSGG	3 cut(s)	578, 579, 593
NcoI	CCATGG	3 cut(s)	294, 333, 378
NdeII	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
NlaIV	GGNNCC	5 cut(s)	376, 583, 760, 898, 972
NmuCI	GTSAC	1 cut(s)	1279
PagI	TCATGA	1 cut(s)	1183
PauI	GCGCGC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	49, 73, 215
PflFI	GACNNNGTC	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	444
PfoI	TCCNGGA	1 cut(s)	591
PleI	GAGTC	2 cut(s)	604, 938
PpsI	GAGTC	2 cut(s)	604, 938
Ppu21I	YACGTR	1 cut(s)	151
Psp124BI	GAGCTC	3 cut(s)	309, 1038, 1220
PspFI	CCCAGC	1 cut(s)	1373
PspN4I	GGNNCC	5 cut(s)	376, 583, 760, 898, 972
PspPI	GGNCC	6 cut(s)	43, 382, 488, 759, 897, 1294
PstI	CTGCAG	2 cut(s)	172, 729
PstNI	CAGNNNCTG	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	628
PteI	GCGCGC	1 cut(s)	478
PvuII	CAGCTG	2 cut(s)	173, 685
RsaI	GTAC	6 cut(s)	115, 149, 160, 196, 608, 746
RsaNI	GTAC	6 cut(s)	114, 148, 159, 195, 607, 745
RseI	CAYNNNNRTG	2 cut(s)	1182, 1418
SacI	GAGCTC	3 cut(s)	309, 1038, 1220
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	414, 555, 939
Sau3AI	GATC	5 cut(s)	187, 991, 1180, 1263, 1308
Sau96I	GGNCC	6 cut(s)	43, 382, 488, 759, 897, 1294
ScaI	AGTACT	2 cut(s)	160, 196
SchI	GAGTC	2 cut(s)	605, 939
ScrFI	CCNGG	3 cut(s)	578, 579, 593
SduI	GDGCHC	5 cut(s)	309, 540, 578, 1038, 1220
SfaNI	GCATC	2 cut(s)	1003, 1007
SfcI	CTRYAG	3 cut(s)	168, 725, 1002
SinI	GGWCC	4 cut(s)	382, 759, 897, 1294
SmaI	CCCGGG	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	1182, 1418
SmlI	CTYRAG	2 cut(s)	280, 1037
SmoI	CTYRAG	2 cut(s)	280, 1037
SpeI	ACTAGT	2 cut(s)	161, 452
Sse9I	AATT	7 cut(s)	56, 78, 339, 473, 965, 1390, 1497
SsiI	CCGC	7 cut(s)	330, 638, 641, 692, 698, 707, 737
SspMI	CTAG	2 cut(s)	162, 453
SstI	GAGCTC	3 cut(s)	309, 1038, 1220
StyD4I	CCNGG	3 cut(s)	576, 577, 591
StyI	CCWWGG	3 cut(s)	294, 333, 378
TaaI	ACNGT	2 cut(s)	158, 1048
TaiI	ACGT	2 cut(s)	153, 1260
TaqI	TCGA	2 cut(s)	773, 994
TasI	AATT	7 cut(s)	56, 78, 339, 473, 965, 1390, 1497
TatI	WGTACW	3 cut(s)	113, 158, 194
TauI	GCSGC	5 cut(s)	332, 641, 644, 700, 739
TfiI	GAWTC	3 cut(s)	49, 73, 215
Tru1I	TTAA	3 cut(s)	414, 555, 939
Tru9I	TTAA	3 cut(s)	414, 555, 939
TseFI	GTSAC	1 cut(s)	1279
Tsp45I	GTSAC	1 cut(s)	1279
TspMI	CCCGGG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	4 cut(s)	382, 759, 897, 1294
XapI	RAATTY	3 cut(s)	56, 78, 1390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmaI	CCCGGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	2 cut(s)	162, 453
ZraI	GACGTC	1 cut(s)	1258
ZrmI	AGTACT	2 cut(s)	160, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.