Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

13302666 .. 13304869

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGTTGTTTCGATCCCAACACTCCAGCAGAAGTTACGGTGGAGAGTAGCTTCTCTCAAGCCGAACCACCACCACCACCACCGCAAGTTCTGGTTGCCGGAAGCACAAGCAACAGCAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCCATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTCCAGTTTCACATCAATCCTCCTCCTCCACCACCTCCTCCTTGTGATCAACTCCACAACAATTTGATTCACCAAATGGCTTCACATCAACAACAACACTCTAATTGGGATAATGGGTATCAGGATTTTGTGAATTTGGGACCTAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCATTGCCTCCTAATCATCATCCTTCCTCTATGCTACCTACCTCTTTCTCAGACATTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGACCCTCTCTTCCATTTGAATTTCCCTATGCAGCCTAGAGATCAGAACCAGCTAAGAAACGGCTCTTGTTTACTTGGAGTTGAAGATCAAATTCAGATGGATGCTAATGGAGGAATGAATGTTTTGTACTTTGAAGGAGCAAACAACAACAATGGTGGATTTGAGAATGAGATTCTTGAGTTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACAGAACGTGAGAGACGAGTTCACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGATAGAGCATCGATAGTTGGAGAGGCGATAGATTACATCAAAGAGCTTTTAAGGACAATAGAGGAGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCAGGAGCAAGAAGAGAGCTAGAGTTGGTGAAGGAGGAGGAGGAGAAGATCAAGAAGAAGAAGAAGACACTGTGAATTACAAGCCACAGAGCGAAGTAGACCAGTCTTGCTTCAACAAGAACAACAACAACTCACTGAGATGTTCATGGCTTAAGAGGAAATCGAAAGTCACTGAGGTCGATGTACGTATAATCGATGATGAAGTAACCATCAAGCTTGTTCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAGTTCTTGATCAGCTTCAGCTAGATCTTCACCATGTTGCAGGTGGACAGATTGGTGAACATTACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTGCAGACACATTGATGGAGGTCGTGGAGAAGCAGTACATGGAAGCTGTTCCTAGCAACGGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

447

Amino Acids

50.03

Weight (kDa)

5.5

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	245 - 292	6.7e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1187
Acc36I	ACCTGC	1 cut(s)	1187
AccI	GTMKAC	1 cut(s)	996
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	3 cut(s)	8, 700, 1261
AcsI	RAATTY	4 cut(s)	149, 328, 499, 570
AcuI	CTGAAG	1 cut(s)	1157
AfaI	GTAC	4 cut(s)	479, 608, 1083, 1313
AfiI	CCNNNNNNNGG	1 cut(s)	1334
AflII	CTTAAG	1 cut(s)	1049
AgsI	TTSAA	7 cut(s)	189, 499, 563, 614, 745, 1012, 1234
AhdI	GACNNNNNGTC	1 cut(s)	448
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	374, 724
AlwI	GGATC	3 cut(s)	8, 700, 1261
AlwNI	CAGNNNCTG	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	464, 467, 511
ApoI	RAATTY	4 cut(s)	149, 328, 499, 570
Asp700I	GAANNNNTTC	1 cut(s)	1323
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	257, 938, 1141, 1178, 1223
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	2 cut(s)	444, 969
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	451, 454, 523
BccI	CCATC	4 cut(s)	162, 571, 1115, 1285
BceAI	ACGGC	1 cut(s)	556
BclI	TGATCA	2 cut(s)	241, 1165
BcoDI	GTCTC	2 cut(s)	374, 724
BfaI	CTAG	6 cut(s)	384, 516, 918, 1178, 1329, 1342
BfmI	CTRYAG	2 cut(s)	121, 717
BfrI	CTTAAG	1 cut(s)	1049
BfuAI	ACCTGC	1 cut(s)	1187
BglII	AGATCT	1 cut(s)	1180
BisI	GCNGC	3 cut(s)	465, 468, 512
BlsI	GCNGC	3 cut(s)	466, 469, 513
Bme18I	GGWCC	1 cut(s)	335
BmeRI	GACNNNNNGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	4 cut(s)	377, 571, 812, 858
BpiI	GAAGAC	2 cut(s)	444, 969
BpmI	CTGGAG	2 cut(s)	9, 182
BpuEI	CTTGAG	3 cut(s)	42, 162, 677
Bsa29I	ATCGAT	2 cut(s)	806, 1092
BsaAI	YACGTR	1 cut(s)	1085
BsaXI	ACNNNNNCTCC	2 cut(s)	1295, 1325
Bsc4I	CCNNNNNNNGG	1 cut(s)	1334
Bse1I	ACTGG	2 cut(s)	199, 1000
Bse3DI	GCAATG	1 cut(s)	392
BseCI	ATCGAT	2 cut(s)	806, 1092
BseGI	GGATG	2 cut(s)	409, 586
BseLI	CCNNNNNNNGG	1 cut(s)	1334
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	4 cut(s)	172, 453, 1025, 1062
BseNI	ACTGG	2 cut(s)	199, 1000
BseRI	GAGGAG	7 cut(s)	207, 210, 222, 872, 948, 951, 954
BseXI	GCAGC	3 cut(s)	451, 454, 523
BshVI	ATCGAT	2 cut(s)	806, 1092
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	1334
BsmAI	GTCTC	2 cut(s)	374, 724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	4 cut(s)	171, 452, 1026, 1063
BspDI	ATCGAT	2 cut(s)	806, 1092
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	1187
BspPI	GGATC	3 cut(s)	8, 700, 1261
BspQI	GCTCTTC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	199, 1000
Bst4CI	ACNGT	3 cut(s)	40, 970, 1139
Bst6I	CTCTTC	5 cut(s)	132, 494, 682, 878, 905
BstAFI	CTTAAG	1 cut(s)	1049
BstBAI	YACGTR	1 cut(s)	1085
BstDEI	CTNAG	7 cut(s)	158, 365, 439, 533, 1034, 1071, 1239
BstF5I	GGATG	2 cut(s)	409, 586
BstMAI	GTCTC	2 cut(s)	374, 724
BstSFI	CTRYAG	2 cut(s)	121, 717
BstSNI	TACGTA	1 cut(s)	1085
BstV1I	GCAGC	3 cut(s)	451, 454, 523
BstV2I	GAAGAC	2 cut(s)	444, 969
BstX2I	RGATCY	2 cut(s)	1180, 1253
BstYI	RGATCY	2 cut(s)	1180, 1253
Bsu15I	ATCGAT	2 cut(s)	806, 1092
BsuTUI	ATCGAT	2 cut(s)	806, 1092
BtsCI	GGATG	2 cut(s)	409, 586
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	4 cut(s)	130, 966, 1031, 1068
BveI	ACCTGC	1 cut(s)	1187
CaiI	CAGNNNCTG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	335
ClaI	ATCGAT	2 cut(s)	806, 1092
Csp6I	GTAC	4 cut(s)	478, 607, 1082, 1312
CspCI	CAANNNNNGTGG	4 cut(s)	616, 651, 775, 810
CviAII	CATG	3 cut(s)	1044, 1190, 1315
CviQI	GTAC	4 cut(s)	478, 607, 1082, 1312
DdeI	CTNAG	7 cut(s)	158, 365, 439, 533, 1034, 1071, 1239
DriI	GACNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	5 cut(s)	132, 494, 682, 878, 905
Eam1105I	GACNNNNNGTC	1 cut(s)	448
EarI	CTCTTC	5 cut(s)	132, 494, 682, 878, 905
Ecl136II	GAGCTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	1085
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	1157
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	3 cut(s)	1047, 1193, 1318
FaiI	YATR	9 cut(s)	422, 449, 476, 509, 1045, 1088, 1191, 1266, 1316
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	1043, 1189, 1314
FbaI	TGATCA	2 cut(s)	241, 1165
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	3 cut(s)	465, 468, 512
FokI	GGATG	2 cut(s)	396, 593
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	465, 468, 512
FspBI	CTAG	6 cut(s)	384, 516, 918, 1178, 1329, 1342
GluI	GCNGC	3 cut(s)	465, 468, 512
GsuI	CTGGAG	2 cut(s)	9, 182
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	3 cut(s)	1047, 1193, 1318
HindIII	AAGCTT	2 cut(s)	180, 1112
HinfI	GANTC	3 cut(s)	262, 652, 897
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	5 cut(s)	257, 938, 1141, 1178, 1223
Hpy166II	GTNNAC	6 cut(s)	551, 739, 997, 1149, 1202, 1214
Hpy188I	TCNGA	5 cut(s)	148, 442, 525, 576, 1122
Hpy188III	TCNNGA	8 cut(s)	317, 356, 656, 696, 705, 901, 950, 1163
Hpy8I	GTNNAC	6 cut(s)	551, 739, 997, 1149, 1202, 1214
HpyAV	CCTTC	4 cut(s)	423, 608, 923, 1244
HpyCH4III	ACNGT	3 cut(s)	40, 970, 1139
HpyCH4IV	ACGT	2 cut(s)	724, 1084
HpyCH4V	TGCA	6 cut(s)	123, 347, 511, 1196, 1268, 1280
HpyF3I	CTNAG	7 cut(s)	158, 365, 439, 533, 1034, 1071, 1239
HpySE526I	ACGT	2 cut(s)	724, 1084
Hsp92II	CATG	3 cut(s)	1047, 1193, 1318
Ksp22I	TGATCA	2 cut(s)	241, 1165
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	617, 903
Lsp1109I	GCAGC	3 cut(s)	451, 454, 523
LweI	GCATC	4 cut(s)	377, 571, 812, 858
MaeI	CTAG	6 cut(s)	384, 516, 918, 1178, 1329, 1342
MaeII	ACGT	2 cut(s)	724, 1084
MaeIII	GTNAC	4 cut(s)	34, 673, 1066, 1102
MflI	RGATCY	2 cut(s)	1180, 1253
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	8 cut(s)	149, 256, 298, 328, 499, 570, 973, 1275
MmeI	TCCRAC	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	1323
MseI	TTAA	6 cut(s)	663, 764, 845, 864, 1050, 1134
MslI	CAYNNNNRTG	3 cut(s)	744, 1036, 1289
MspCI	CTTAAG	1 cut(s)	1049
MspI	CCGG	1 cut(s)	99
NlaIII	CATG	3 cut(s)	1047, 1193, 1318
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	1066
PaqCI	CACCTGC	1 cut(s)	1187
PciSI	GCTCTTC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	1323
PfeI	GAWTC	3 cut(s)	262, 652, 897
PkrI	GCNGC	3 cut(s)	466, 469, 513
Ppu21I	YACGTR	1 cut(s)	1085
PpuMI	RGGWCCY	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	335
PspPPI	RGGWCCY	1 cut(s)	335
PsrI	GAACNNNNNNTAC	2 cut(s)	700, 732
PstI	CTGCAG	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	1180, 1253
RsaI	GTAC	4 cut(s)	479, 608, 1083, 1313
RsaNI	GTAC	4 cut(s)	478, 607, 1082, 1312
RseI	CAYNNNNRTG	3 cut(s)	744, 1036, 1289
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	6 cut(s)	663, 764, 845, 864, 1050, 1134
SatI	GCNGC	3 cut(s)	465, 468, 512
Sau96I	GGNCC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	4 cut(s)	377, 571, 812, 858
SfcI	CTRYAG	2 cut(s)	121, 717
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	3 cut(s)	744, 1036, 1289
SmlI	CTYRAG	4 cut(s)	57, 177, 656, 1049
SmoI	CTYRAG	4 cut(s)	57, 177, 656, 1049
SnaBI	TACGTA	1 cut(s)	1085
Sse9I	AATT	8 cut(s)	149, 256, 298, 328, 499, 570, 973, 1275
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	6 cut(s)	384, 516, 918, 1178, 1329, 1342
SstI	GAGCTC	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	40, 970, 1139
TaiI	ACGT	2 cut(s)	727, 1087
TaqI	TCGA	7 cut(s)	12, 704, 759, 806, 1061, 1077, 1092
TasI	AATT	8 cut(s)	149, 256, 298, 328, 499, 570, 973, 1275
TatI	WGTACW	2 cut(s)	606, 1311
TfiI	GAWTC	3 cut(s)	262, 652, 897
Tru1I	TTAA	6 cut(s)	663, 764, 845, 864, 1050, 1134
Tru9I	TTAA	6 cut(s)	663, 764, 845, 864, 1050, 1134
TscAI	CASTG	4 cut(s)	130, 973, 1038, 1075
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	3 cut(s)	464, 467, 511
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	3 cut(s)	611, 1032, 1113
TspRI	CASTG	4 cut(s)	130, 973, 1038, 1075
Vha464I	CTTAAG	1 cut(s)	1049
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	4 cut(s)	149, 328, 499, 570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1196
XmiI	GTMKAC	1 cut(s)	996
XmnI	GAANNNNTTC	1 cut(s)	1323
XspI	CTAG	6 cut(s)	384, 516, 918, 1178, 1329, 1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.