Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002887

Physical Location & Seq

Genomic Coordinates Forward (+)

2437281 .. 2439665

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACGAAGAACTACCCAACCGTGAGCGAAGATTACAAGAAGGCTGTTGAGAAGTGCAGGAGGAAGCTCAGAGGTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTCCGACTCGCATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAATGAGGTTTGACGCTGAGCAAGCTCATGGAGCCAACAGTGGTATCCACATTGCTCTTAGGTTGTTGGACCCCATCAGGGAGCAATTCCCTACCATCTCTTTTGCTGATTTCCATCAGCTTGCTGGTGTTGTGGCCGTTGAAGTTACTGGTGGCCCTGACATTCCTTTCCACCCTGGAAGAGAGGACAAGCCCCAACCACCTCCAGAGGGTCGTCTTCCTGATGCTACCAAGGGTTGTGACCATTTGAGAGATGTCTTTGCTAAGCAGATGGGCTTATCTGACAAAGACATTGTCGCTTTATCTGGTGCCCACACTCTGGGACGATGCCACAAGGATAGGTCTGGCTTCGAAGGTGCATGGACATCAAACCCTCTAATCTTCGACAACTCTTACTTCAAGGAACTCTTGAGCGGAGAGAAGGAAGGCCTTCTTCAGCTTGTCTCTGACAAAGCACTATTGGACGACCCTGTTTTCCGTCCTTTGGTCGAGAAATACGCTGCTGATGAAGATGCCTTTTTCGCTGATTACGCTGAGGCCCACATGAAGCTTTCTGAGCTTGGGTTTGCTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0022414 GO:0030054 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0061458 GO:0070887 GO:0071944 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

250

Amino Acids

27.56

Weight (kDa)

5.72

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	24 - 227	2.4e-46	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890
fragaria_vesca	FvH4_3g33910
malus_domestica	MD03G1108200.v1.1 MD11G1121400.v1.1
prunus_persica	Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1
pyrus_communis	pycom03g08820 pycom11g10330
rosa_chinensis	RchiOBHm_Chr5g0061461
rosa_laevigata	RLG00000035480
rosa_multiflora	Rmu_sc0001527.1_g000034 Rmu_sc0003467.1_g000017 Rmu_sc0005050.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009150 Rroxscaffold_1G00019220 Rroxscaffold_3G00255660 Rroxscaffold_5G00336730 Rroxscaffold_5G00368820
rosa_rugosa	Rorug05G0340500
rosa_samantha	Rh1AG201500 Rh1CG186400 Rh3CG141800 Rh4DG107700 Rh4DG192700 Rh5AG402900 Rh5BG415300 Rh5BG484500 Rh5CG440000 Rh5DG429900
rosa_wichuraiana	Rw5G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccBSI	CCGCTC	1 cut(s)	588
AciI	CCGC	1 cut(s)	588
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	253, 383, 493, 658
AgsI	TTSAA	2 cut(s)	317, 574
AhdI	GACNNNNNGTC	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	6 cut(s)	67, 200, 295, 613, 724, 733
AluI	AGCT	6 cut(s)	67, 200, 295, 613, 724, 733
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	622
Alw44I	GTGCAC	1 cut(s)	96
AoxI	GGCC	4 cut(s)	309, 328, 601, 711
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	453, 485
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	5 cut(s)	109, 164, 244, 329, 712
AsuII	TTCGAA	1 cut(s)	525
AvaII	GGWCC	3 cut(s)	109, 164, 244
BaeGI	GKGCMC	2 cut(s)	100, 487
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	5 cut(s)	110, 257, 278, 297, 439
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	675
BlpI	GCTNAGC	2 cut(s)	192, 438
BlsI	GCNGC	1 cut(s)	676
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	3 cut(s)	109, 164, 244
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmgT120I	GGNCC	5 cut(s)	109, 164, 244, 329, 712
BmiI	GGNNCC	3 cut(s)	208, 246, 484
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	4 cut(s)	388, 491, 676, 736
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	180, 363
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	2 cut(s)	192, 438
Bpu14I	TTCGAA	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	349, 405
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 383, 493, 658
Bse1I	ACTGG	2 cut(s)	163, 328
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	349, 405
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	253, 383, 493, 658
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	5 cut(s)	75, 82, 183, 699, 720
BseNI	ACTGG	2 cut(s)	163, 328
BseSI	GKGCMC	2 cut(s)	100, 487
BseXI	GCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	311, 330, 603, 713
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	4 cut(s)	253, 383, 493, 658
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	4 cut(s)	311, 330, 603, 713
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	100, 487
Bsp143I	GATC	1 cut(s)	78
Bsp1720I	GCTNAGC	2 cut(s)	192, 438
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	4 cut(s)	311, 330, 603, 713
BspCNI	CTCAG	5 cut(s)	76, 81, 184, 700, 721
BspLI	GGNNCC	3 cut(s)	208, 246, 484
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	163, 328
BssECI	CCNNGG	2 cut(s)	349, 405
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	22, 95, 215
Bst6I	CTCTTC	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	198, 297
BstDEI	CTNAG	7 cut(s)	68, 84, 192, 233, 438, 708, 729
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 695, 704, 730
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSLI	GKGCMC	2 cut(s)	100, 487
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	311, 330, 603, 713
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	198, 297
Cfr13I	GGNCC	5 cut(s)	109, 164, 244, 329, 712
CseI	GACGC	1 cut(s)	197
CviAII	CATG	5 cut(s)	106, 120, 203, 534, 718
DdeI	CTNAG	7 cut(s)	68, 84, 192, 233, 438, 708, 729
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DriI	GACNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	603
Eco47I	GGWCC	3 cut(s)	109, 164, 244
Eco57I	CTGAAG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	5 cut(s)	109, 123, 206, 537, 721
FaiI	YATR	5 cut(s)	107, 121, 204, 535, 719
FalI	AAGNNNNNCTT	4 cut(s)	566, 598, 591, 623
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	5 cut(s)	105, 119, 202, 533, 717
Fnu4HI	GCNGC	1 cut(s)	675
Fsp4HI	GCNGC	1 cut(s)	675
GluI	GCNGC	1 cut(s)	675
GsuI	CTGGAG	2 cut(s)	180, 363
HaeIII	GGCC	4 cut(s)	311, 330, 603, 713
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	109, 123, 206, 537, 721
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	6 cut(s)	71, 113, 173, 457, 622, 730
Hpy188III	TCNNGA	4 cut(s)	380, 395, 583, 664
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	34, 521, 589, 593, 614
HpyCH4III	ACNGT	3 cut(s)	22, 95, 215
HpyCH4V	TGCA	3 cut(s)	57, 98, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 695, 704, 730
HpyF3I	CTNAG	7 cut(s)	68, 84, 192, 233, 438, 708, 729
Hsp92II	CATG	5 cut(s)	109, 123, 206, 537, 721
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	206, 256
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	4 cut(s)	388, 491, 676, 736
MaeIII	GTNAC	2 cut(s)	319, 413
MalI	GATC	1 cut(s)	80
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	1 cut(s)	78
MboII	GAAGA	8 cut(s)	19, 41, 100, 366, 383, 547, 599, 695
MhlI	GDGCHC	2 cut(s)	100, 487
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	136, 222
MnlI	CCTC	9 cut(s)	54, 65, 155, 174, 352, 376, 387, 558, 703
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	1 cut(s)	751
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 695, 704, 730
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	5 cut(s)	109, 123, 206, 537, 721
NlaIV	GGNNCC	3 cut(s)	208, 246, 484
NmuCI	GTSAC	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	603
PflFI	GACNNNGTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	208, 246, 484
PspPI	GGNCC	5 cut(s)	109, 164, 244, 329, 712
PsyI	GACNNNGTC	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	5 cut(s)	109, 164, 244, 329, 712
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	100, 487
SfaNI	GCATC	4 cut(s)	388, 491, 676, 736
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	3 cut(s)	109, 164, 244
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	3 cut(s)	22, 95, 215
TaqI	TCGA	4 cut(s)	141, 525, 558, 663
TasI	AATT	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	696, 734
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	3 cut(s)	109, 164, 244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.