Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002887

Physical Location & Seq

Genomic Coordinates Reverse (-)

4563923 .. 4568061

Gene Structure 4139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATACGAGCGGTGATGGTGATGAAATACTCAGGGCAAGCCTTGCCTTGCCAAGTTTTACGAATTTCAGGGGAGGCTCTTTCACTCTCTGCTGGAACCTATGATGTGAAACCTAAGATTGGAGGTCCATTCGGAACCATGAAGCAGTCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTTTGGCTGGAGTTATTGCTGTCGATGTCACTGGTGGACCTAATGTTCCATTCCATCCAGGAAGAGAGTTAGCATTTAGGAAATTGAATAAAGGCCTTTGGTATGATCTTAATTTAAGGCCAATGCATTTGCACAATCCTGGATCTTTTATTTTTGTTGCTGCAGTTTTGAGCAGTAGAGCTGAGAAGTCCAGCAATTTTCTGGATGCAGGGTATATTTTTGGATACTCAGCTTGTGTACAAGTATTTAAGGTAAGGTATCAGTGTATGCACAAGGATAAGCGGCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

160

Amino Acids

17.38

Weight (kDa)

9.6

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890
fragaria_vesca	FvH4_3g33910
malus_domestica	MD03G1108200.v1.1 MD11G1121400.v1.1
prunus_persica	Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1
pyrus_communis	pycom03g08820 pycom11g10330
rosa_chinensis	RchiOBHm_Chr5g0061461
rosa_laevigata	RLG00000035480
rosa_multiflora	Rmu_sc0001527.1_g000034 Rmu_sc0003467.1_g000017 Rmu_sc0005050.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009150 Rroxscaffold_1G00019220 Rroxscaffold_3G00255660 Rroxscaffold_5G00336730 Rroxscaffold_5G00368820
rosa_rugosa	Rorug05G0340500
rosa_samantha	Rh1AG201500 Rh1CG186400 Rh3CG141800 Rh4DG107700 Rh4DG192700 Rh5AG402900 Rh5BG415300 Rh5BG484500 Rh5CG440000 Rh5DG429900
rosa_wichuraiana	Rw5G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 472
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	247, 328
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	4 cut(s)	152, 157, 371, 422
AluI	AGCT	4 cut(s)	152, 157, 371, 422
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	283, 308
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	125, 227
AsuHPI	GGTGA	2 cut(s)	25, 31
AvaII	GGWCC	2 cut(s)	125, 227
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	10, 252
BciT130I	CCWGG	2 cut(s)	249, 330
BciVI	GTATCC	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	351, 473
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	352, 474
Bme1390I	CCNGG	2 cut(s)	249, 330
Bme18I	GGWCC	2 cut(s)	125, 227
BmgT120I	GGNCC	2 cut(s)	125, 227
BmiI	GGNNCC	2 cut(s)	97, 136
BmrFI	CCNGG	2 cut(s)	249, 330
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	249, 330
BseGI	GGATG	2 cut(s)	244, 400
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	45, 144, 363, 432
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	285, 310
BslI	CCNNNNNNNGG	1 cut(s)	119
BsnI	GGCC	2 cut(s)	285, 310
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	295, 332
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	11, 472
BspANI	GGCC	2 cut(s)	285, 310
BspCNI	CTCAG	4 cut(s)	44, 145, 364, 431
BspLI	GGNNCC	2 cut(s)	97, 136
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	295, 332
Bst2UI	CCWGG	2 cut(s)	249, 330
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	39, 159
BstDEI	CTNAG	5 cut(s)	31, 114, 153, 372, 418
BstF5I	GGATG	2 cut(s)	244, 400
BstKTI	GATC	2 cut(s)	298, 335
BstMBI	GATC	2 cut(s)	295, 332
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 158, 167
BstNI	CCWGG	2 cut(s)	249, 330
BstSCI	CCNGG	2 cut(s)	247, 328
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	285, 310
BtsCI	GGATG	2 cut(s)	244, 400
BtsIMutI	CAGTG	2 cut(s)	219, 458
Cac8I	GCNNGC	2 cut(s)	39, 159
Cfr13I	GGNCC	2 cut(s)	125, 227
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	139, 476
CviJI	RGCY	9 cut(s)	41, 77, 152, 157, 197, 285, 310, 371, 422
CviKI_1	RGCY	9 cut(s)	41, 77, 152, 157, 197, 285, 310, 371, 422
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	5 cut(s)	31, 114, 153, 372, 418
DpnI	GATC	2 cut(s)	297, 334
DpnII	GATC	2 cut(s)	295, 332
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	125, 227
EcoRII	CCWGG	2 cut(s)	247, 328
EcoT22I	ATGCAT	1 cut(s)	318
FaeI	CATG	2 cut(s)	142, 479
FaiI	YATR	6 cut(s)	102, 140, 294, 405, 458, 477
FatI	CATG	2 cut(s)	138, 475
Fnu4HI	GCNGC	2 cut(s)	351, 473
FokI	GGATG	2 cut(s)	231, 407
Fsp4HI	GCNGC	2 cut(s)	351, 473
GluI	GCNGC	2 cut(s)	351, 473
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	285, 310
Hin1II	CATG	2 cut(s)	142, 479
HphI	GGTGA	2 cut(s)	25, 31
Hpy166II	GTNNAC	2 cut(s)	227, 428
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	182, 392
Hpy8I	GTNNAC	2 cut(s)	227, 428
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	316, 322, 353, 398, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 158, 167
HpyF3I	CTNAG	5 cut(s)	31, 114, 153, 372, 418
Hsp92II	CATG	2 cut(s)	142, 479
Kzo9I	GATC	2 cut(s)	295, 332
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	297, 334
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	295, 332
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	4 cut(s)	63, 272, 301, 385
MnlI	CCTC	2 cut(s)	67, 116
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	4 cut(s)	300, 305, 438, 481
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	249, 330
MvaI	CCWGG	2 cut(s)	249, 330
MwoI	GCNNNNNNNGC	3 cut(s)	43, 158, 167
NdeII	GATC	2 cut(s)	295, 332
NlaIII	CATG	2 cut(s)	142, 479
NlaIV	GGNNCC	2 cut(s)	97, 136
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	285
PfoI	TCCNGGA	2 cut(s)	247, 328
PkrI	GCNGC	2 cut(s)	352, 474
Psp6I	CCWGG	2 cut(s)	247, 328
PspGI	CCWGG	2 cut(s)	247, 328
PspN4I	GGNNCC	2 cut(s)	97, 136
PspPI	GGNCC	2 cut(s)	125, 227
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	4 cut(s)	300, 305, 438, 481
SatI	GCNGC	2 cut(s)	351, 473
Sau3AI	GATC	2 cut(s)	295, 332
Sau96I	GGNCC	2 cut(s)	125, 227
ScrFI	CCNGG	2 cut(s)	249, 330
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	125, 227
Sse9I	AATT	4 cut(s)	63, 272, 301, 385
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	11, 472
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	247, 328
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	213
TasI	AATT	4 cut(s)	63, 272, 301, 385
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	475
Tru1I	TTAA	4 cut(s)	300, 305, 438, 481
Tru9I	TTAA	4 cut(s)	300, 305, 438, 481
TscAI	CASTG	2 cut(s)	226, 458
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	38, 155
TspRI	CASTG	2 cut(s)	226, 458
VpaK11BI	GGWCC	2 cut(s)	125, 227
XapI	RAATTY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.