RLG00000035480

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002887
Physical Location & Seq
Reverse (-)
67379735 .. 67381513
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035480

Sequence Viewer

Length: 576 bp
ATGAAGCATCCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTTTACCAGTTGGCTGGAGTTGTTGCTGTAGAGGTTACTGGTGGACCTGATGTTCCATTCCACCCAGGAAGAGAGGACAAGCCTGAACCACCTCCAGAAGGCCGTCTTCCTGATGCTGGCAAGGGTTCTGACCACTTGAGGGATGTGTTTGGCAAAACCATGGGCCTCAGCGACCAGGACATTGTCGCTCTCTCTGGTGGTCACACCTTGGGAAGGTGCCACAAGGAACGATCTGGATTTGAGGGACCCTGGACTCCCAACCCCCTTATTTTTGACAACTCATATTTCACGGAGCTGTTGAGTGGAGAGAAGGAAGGTCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCCGACCCTGTCTTCCGCCCGCTTGTTGACAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGCTTTGCTGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

192

Amino Acids

20.81

Weight (kDa)

4.77

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 4 - 168 8.9e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AciI CCGC 3 cut(s) 475, 479, 500
AfiI CCNNNNNNNGG 4 cut(s) 206, 224, 247, 321
AjnI CCWGG 3 cut(s) 172, 282, 356
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 7 cut(s) 14, 19, 403, 436, 536, 556, 572
AluI AGCT 7 cut(s) 14, 19, 403, 436, 536, 556, 572
AoxI GGCC 2 cut(s) 208, 271
ApeKI GCWGC 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 152, 271, 353
AvaII GGWCC 2 cut(s) 152, 353
BanI GGYRCC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BbsI GAAGAC 3 cut(s) 206, 419, 463
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 3 cut(s) 174, 284, 358
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 2 cut(s) 135, 431
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 3 cut(s) 174, 284, 358
Bme18I GGWCC 2 cut(s) 152, 353
BmgT120I GGNCC 3 cut(s) 152, 271, 353
BmiI GGNNCC 4 cut(s) 69, 326, 354, 355
BmrFI CCNGG 3 cut(s) 174, 284, 358
BmsI GCATC 3 cut(s) 16, 211, 499
BpiI GAAGAC 3 cut(s) 206, 419, 463
BpmI CTGGAG 2 cut(s) 144, 186
Bpu10I CCTNAGC 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 4 cut(s) 172, 267, 315, 356
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 224, 247, 321
Bse1I ACTGG 2 cut(s) 115, 151
BseBI CCWGG 3 cut(s) 174, 284, 358
BseDI CCNNGG 4 cut(s) 172, 267, 315, 356
BseGI GGATG 3 cut(s) 7, 256, 508
BseLI CCNNNNNNNGG 4 cut(s) 206, 224, 247, 321
BseMII CTCAG 3 cut(s) 6, 289, 543
BseNI ACTGG 2 cut(s) 115, 151
BseXI GCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 210, 273
BshNI GGYRCC 1 cut(s) 324
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 206, 224, 247, 321
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 210, 273
Bsp143I GATC 1 cut(s) 338
Bsp1720I GCTNAGC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 3 cut(s) 475, 479, 500
BspANI GGCC 2 cut(s) 210, 273
BspCNI CTCAG 3 cut(s) 7, 288, 544
BspLI GGNNCC 4 cut(s) 69, 326, 354, 355
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 115, 151
BssECI CCNNGG 4 cut(s) 172, 267, 315, 356
BssMI GATC 1 cut(s) 338
BssT1I CCWWGG 2 cut(s) 267, 315
Bst2UI CCWGG 3 cut(s) 174, 284, 358
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 172, 459
BstC8I GCNNGC 3 cut(s) 21, 226, 479
BstDEI CTNAG 3 cut(s) 15, 275, 552
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 2 cut(s) 204, 319
BstF5I GGATG 3 cut(s) 7, 256, 508
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 6 cut(s) 20, 29, 67, 518, 527, 553
BstNI CCWGG 3 cut(s) 174, 284, 358
BstSCI CCNGG 3 cut(s) 172, 282, 356
BstSFI CTRYAG 2 cut(s) 135, 431
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 3 cut(s) 206, 419, 463
BstXI CCANNNNNNTGG 1 cut(s) 122
BsuRI GGCC 2 cut(s) 210, 273
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 7, 256, 508
Cac8I GCNNGC 3 cut(s) 21, 226, 479
Cfr13I GGNCC 3 cut(s) 152, 271, 353
CviAII CATG 1 cut(s) 268
DdeI CTNAG 3 cut(s) 15, 275, 552
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 172, 459
EarI CTCTTC 2 cut(s) 172, 459
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 267, 315
Eco47I GGWCC 2 cut(s) 152, 353
EcoNI CCTNNNNNAGG 2 cut(s) 204, 319
EcoO109I RGGNCCY 1 cut(s) 353
EcoRII CCWGG 3 cut(s) 172, 282, 356
EcoT14I CCWWGG 2 cut(s) 267, 315
ErhI CCWWGG 2 cut(s) 267, 315
FaeI CATG 1 cut(s) 271
FaiI YATR 4 cut(s) 269, 391, 495, 528
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 366
FatI CATG 1 cut(s) 267
FauI CCCGC 1 cut(s) 486
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 263, 515
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 144, 186
HaeIII GGCC 2 cut(s) 210, 273
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 152, 487
Hpy188I TCNGA 4 cut(s) 238, 463, 543, 553
Hpy188III TCNNGA 4 cut(s) 44, 203, 218, 342
Hpy8I GTNNAC 2 cut(s) 152, 487
HpyAV CCTTC 4 cut(s) 200, 315, 412, 416
HpyCH4III ACNGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 29, 67, 518, 527, 553
HpyF3I CTNAG 3 cut(s) 15, 275, 552
Hsp92II CATG 1 cut(s) 271
KflI GGGWCCC 1 cut(s) 353
Kzo9I GATC 1 cut(s) 338
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 3 cut(s) 67, 79, 400
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 3 cut(s) 16, 211, 499
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 142, 308
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 6 cut(s) 189, 206, 419, 446, 463, 518
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 464, 486
MnlI CCTC 7 cut(s) 133, 175, 210, 240, 284, 343, 537
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 1 cut(s) 574
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 174, 284, 358
MvaI CCWGG 3 cut(s) 174, 284, 358
MwoI GCNNNNNNNGC 6 cut(s) 20, 29, 67, 518, 527, 553
NcoI CCATGG 1 cut(s) 267
NdeII GATC 1 cut(s) 338
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 4 cut(s) 69, 326, 354, 355
NmuCI GTSAC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 426
PflFI GACNNNGTC 2 cut(s) 290, 467
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 172, 282, 356
PspGI CCWGG 3 cut(s) 172, 282, 356
PspN4I GGNNCC 4 cut(s) 69, 326, 354, 355
PspPI GGNCC 3 cut(s) 152, 271, 353
PspPPI RGGWCCY 1 cut(s) 353
PsyI GACNNNGTC 2 cut(s) 290, 467
PvuII CAGCTG 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 3 cut(s) 152, 271, 353
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 174, 284, 358
SfaNI GCATC 3 cut(s) 16, 211, 499
SfcI CTRYAG 2 cut(s) 135, 431
SinI GGWCC 2 cut(s) 152, 353
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SsiI CCGC 3 cut(s) 475, 479, 500
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 172, 282, 356
StyI CCWWGG 2 cut(s) 267, 315
TaaI ACNGT 1 cut(s) 29
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 17, 519
TspGWI ACGGA 1 cut(s) 413
Tth111I GACNNNGTC 2 cut(s) 290, 467
VpaK11BI GGWCC 2 cut(s) 152, 353
XagI CCTNNNNNAGG 2 cut(s) 204, 319
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.