FvH4_3g33910

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002887
Physical Location & Seq
Reverse (-)
29338002 .. 29340788
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33910.t1

Sequence Viewer

Length: 753 bp
ATGGGGAAGTGCTACCCGACCGTGAGCGAGGAGTACAAGAAGGCCATCGACAAGGCCAAGAGGAAGCTCAGAGGCCTCATCGCCGAGAAGAACTGCGCTCCTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGAACCTATGATGTGAAAACCAAGACCGGAGGCCCATTCGGAACCATGAAGCAGCCGGCTGAGCTCGCTCACGGCGCTAACAATGGTCTTGACATTGCTGTCAGGCTCTTGGAGCCGATCAAGGAGCAGTTCCCTATTCTCTCTTATGCTGACTTCTACCAGTTGGCTGGAGTTGTTGCTGTTGAGGTCACCGGTGGACCTGATGTTCCATTCCACCCAGGAAGAGAGGACAAGCCCGAACCACCACCAGAAGGCCGTCTTCCTGATGCTGGAAAGGGTTCTGACCACTTGAGGGAAGTGTTTGGCAAAACCATGGGTCTCAGCGACCAGGACATTGTTGCTCTCTCTGGTGGTCACACCTTGGGAAGGGCACACAAGGAACGGTCTGGATTCGAGGGACCCTGGACTCCCAACCCCCTTATCTTTGACAACTCATATTTCACTGTGCTGTTGAGTGGAGAGAAGGAAGGCCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCAGACCCTGTCTTCCGCCCTCTTGTTGAGAAATACGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGTTTTGCTGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

251

Amino Acids

27.28

Weight (kDa)

5.69

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 25 - 227 9.9e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AciI CCGC 2 cut(s) 652, 677
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
AgeI ACCGGT 1 cut(s) 323
AjnI CCWGG 3 cut(s) 349, 459, 533
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 6 cut(s) 67, 196, 613, 713, 733, 749
AluI AGCT 6 cut(s) 67, 196, 613, 713, 733, 749
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 119, 455
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 6 cut(s) 42, 54, 73, 163, 385, 601
ApeKI GCWGC 2 cut(s) 184, 674
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 2 cut(s) 409, 603
AspLEI GCGC 2 cut(s) 98, 209
AspS9I GGNCC 3 cut(s) 164, 329, 530
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 2 cut(s) 329, 530
BaeGI GKGCMC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
BbsI GAAGAC 2 cut(s) 383, 640
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 196, 661
BccI CCATC 1 cut(s) 53
BceAI ACGGC 2 cut(s) 220, 372
BciT130I CCWGG 3 cut(s) 351, 461, 535
BcoDI GTCTC 2 cut(s) 119, 455
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 608
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 2 cut(s) 185, 675
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 186, 676
Bme1390I CCNGG 3 cut(s) 351, 461, 535
Bme18I GGWCC 2 cut(s) 329, 530
BmgT120I GGNCC 3 cut(s) 164, 329, 530
BmiI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BmrFI CCNGG 3 cut(s) 351, 461, 535
BmsI GCATC 2 cut(s) 388, 676
BpiI GAAGAC 2 cut(s) 383, 640
BpmI CTGGAG 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 349, 444, 492, 533
BsaWI WCCGGW 2 cut(s) 158, 323
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
Bse118I RCCGGY 2 cut(s) 187, 323
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 351, 461, 535
BseDI CCNNGG 4 cut(s) 349, 444, 492, 533
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 4 cut(s) 82, 183, 466, 720
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 44, 90
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 196, 661
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 6 cut(s) 44, 56, 75, 165, 387, 603
BshTI ACCGGT 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 159, 188, 324
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
BsmAI GTCTC 2 cut(s) 119, 455
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 6 cut(s) 44, 56, 75, 165, 387, 603
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 198, 505
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 652, 677
BspANI GGCC 6 cut(s) 44, 56, 75, 165, 387, 603
BspCNI CTCAG 4 cut(s) 81, 184, 465, 721
BspLI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BspQI GCTCTTC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 2 cut(s) 187, 323
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 2 cut(s) 187, 323
BssECI CCNNGG 4 cut(s) 349, 444, 492, 533
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 444, 492
Bst2UI CCWGG 3 cut(s) 351, 461, 535
Bst4CI ACNGT 3 cut(s) 22, 516, 577
Bst6I CTCTTC 2 cut(s) 349, 636
BstC8I GCNNGC 2 cut(s) 189, 198
BstDEI CTNAG 4 cut(s) 68, 192, 452, 729
BstDSI CCRYGG 1 cut(s) 444
BstEII GGTNACC 1 cut(s) 319
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 685
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 98, 209
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 119, 455
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
BstNI CCWGG 3 cut(s) 351, 461, 535
BstPI GGTNACC 1 cut(s) 319
BstSCI CCNGG 3 cut(s) 349, 459, 533
BstSFI CTRYAG 1 cut(s) 608
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 196, 661
BstV2I GAAGAC 2 cut(s) 383, 640
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 6 cut(s) 44, 56, 75, 165, 387, 603
BtgI CCRYGG 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 189, 198
CaiI CAGNNNCTG 1 cut(s) 644
CfoI GCGC 2 cut(s) 98, 209
Cfr10I RCCGGY 2 cut(s) 187, 323
Cfr13I GGNCC 3 cut(s) 164, 329, 530
Csp6I GTAC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 4 cut(s) 106, 120, 178, 445
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 68, 192, 452, 729
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 349, 636
EarI CTCTTC 2 cut(s) 349, 636
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 444, 492
Eco147I AGGCCT 2 cut(s) 75, 603
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 329, 530
Eco53kI GAGCTC 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 530
EcoO65I GGTNACC 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 349, 459, 533
EcoT14I CCWWGG 2 cut(s) 444, 492
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 444, 492
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 123, 181, 448
FaiI YATR 8 cut(s) 107, 121, 141, 179, 279, 446, 568, 705
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 105, 119, 177, 444
Fnu4HI GCNGC 2 cut(s) 185, 675
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 185, 675
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 97, 208
GluI GCNGC 2 cut(s) 185, 675
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 6 cut(s) 44, 56, 75, 165, 387, 603
HapII CCGG 3 cut(s) 159, 188, 324
HhaI GCGC 2 cut(s) 98, 209
Hin1II CATG 4 cut(s) 109, 123, 181, 448
Hin6I GCGC 2 cut(s) 96, 207
HinP1I GCGC 2 cut(s) 96, 207
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 2 cut(s) 522, 538
HpaII CCGG 3 cut(s) 159, 188, 324
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 6 cut(s) 71, 173, 415, 640, 720, 730
Hpy188III TCNNGA 3 cut(s) 221, 395, 519
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 34, 377, 492, 589, 593, 614
HpyCH4III ACNGT 3 cut(s) 22, 516, 577
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
HpyF3I CTNAG 4 cut(s) 68, 192, 452, 729
Hsp92II CATG 4 cut(s) 109, 123, 181, 448
HspAI GCGC 2 cut(s) 96, 207
KflI GGGWCCC 1 cut(s) 530
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 4 cut(s) 103, 114, 244, 256
Lsp1109I GCAGC 2 cut(s) 196, 661
LweI GCATC 2 cut(s) 388, 676
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 2 cut(s) 319, 485
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 6 cut(s) 100, 366, 383, 623, 640, 695
MhlI GDGCHC 2 cut(s) 198, 505
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 641
MroNI GCCGGC 1 cut(s) 187
MroXI GAANNNNTTC 2 cut(s) 409, 603
MseI TTAA 1 cut(s) 751
MspI CCGG 3 cut(s) 159, 188, 324
MspR9I CCNGG 3 cut(s) 351, 461, 535
MvaI CCWGG 3 cut(s) 351, 461, 535
MwoI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
NaeI GCCGGC 1 cut(s) 189
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 109, 123, 181, 448
NlaIV GGNNCC 5 cut(s) 136, 175, 246, 531, 532
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 319, 485
PceI AGGCCT 2 cut(s) 75, 603
PciSI GCTCTTC 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 189
PdmI GAANNNNTTC 2 cut(s) 409, 603
PfeI GAWTC 1 cut(s) 522
PflFI GACNNNGTC 1 cut(s) 644
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 2 cut(s) 186, 676
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 349, 459, 533
PspEI GGTNACC 1 cut(s) 319
PspGI CCWGG 3 cut(s) 349, 459, 533
PspN4I GGNNCC 5 cut(s) 136, 175, 246, 531, 532
PspPI GGNCC 3 cut(s) 164, 329, 530
PspPPI RGGWCCY 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 2 cut(s) 185, 675
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 3 cut(s) 164, 329, 530
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 351, 461, 535
SduI GDGCHC 2 cut(s) 198, 505
SfaNI GCATC 2 cut(s) 388, 676
SfcI CTRYAG 1 cut(s) 608
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 2 cut(s) 329, 530
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 2 cut(s) 75, 603
SsiI CCGC 2 cut(s) 652, 677
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 2 cut(s) 75, 603
StyD4I CCNGG 3 cut(s) 349, 459, 533
StyI CCWWGG 2 cut(s) 444, 492
TaaI ACNGT 3 cut(s) 22, 516, 577
TaqI TCGA 2 cut(s) 48, 525
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 319, 485
TseI GCWGC 2 cut(s) 184, 674
Tsp45I GTSAC 2 cut(s) 319, 485
TspDTI ATGAA 2 cut(s) 194, 696
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 329, 530
XagI CCTNNNNNAGG 1 cut(s) 496
XmnI GAANNNNTTC 2 cut(s) 409, 603
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.