Rh5BG484500

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002887
Physical Location & Seq
Reverse (-)
77368382 .. 77369370
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG484500.1

Sequence Viewer

Length: 264 bp
ATGAAGCAGTCAGCTAAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATCCTCTCTTACGCTGACTTCTACCAGTTGGCTGGAGTTGTTGCTGTCGATGTCACTGGGTACTTAATGTTCCATTCCATCCAGGAAGATAGCTTTGATTGGCATTTATGGAGTTTGGCTGAGCTCTTGGTGAATGTGTCGGATACTCAGCTTGTGTACAAGTATTTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

87

Amino Acids

9.92

Weight (kDa)

5.07

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 5 - 51 1.5e-06 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 152, 248
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 5 cut(s) 14, 19, 183, 214, 241
AluI AGCT 5 cut(s) 14, 19, 183, 214, 241
Alw21I GWGCWC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 232
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 226
BfuI GTATCC 1 cut(s) 226
BlpI GCTNAGC 2 cut(s) 15, 210
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 2 cut(s) 15, 210
Bse1I ACTGG 2 cut(s) 115, 151
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 201, 251
BseNI ACTGG 2 cut(s) 115, 151
BsiHKAI GWGCWC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 246
Bsp1720I GCTNAGC 2 cut(s) 15, 210
BspCNI CTCAG 2 cut(s) 202, 250
BspLI GGNNCC 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 115, 151
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 15, 210, 237
BstF5I GGATG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 20, 29, 67
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 122
BsuI GTATCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 151, 247
CviJI RGCY 9 cut(s) 14, 19, 61, 70, 122, 183, 209, 214, 241
CviKI_1 RGCY 9 cut(s) 14, 19, 61, 70, 122, 183, 209, 214, 241
CviQI GTAC 2 cut(s) 151, 247
DdeI CTNAG 3 cut(s) 15, 210, 237
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 216
FaiI YATR 1 cut(s) 199
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 17
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 29, 67
HpyF3I CTNAG 3 cut(s) 15, 210, 237
LmnI GCTCC 2 cut(s) 67, 79
LpnPI CCDG 6 cut(s) 43, 108, 128, 132, 158, 185
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 1 cut(s) 104
MseI TTAA 2 cut(s) 155, 257
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 20, 29, 67
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
RsaI GTAC 2 cut(s) 152, 248
RsaNI GTAC 2 cut(s) 151, 247
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 155, 257
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 16, 21, 185, 216, 243, 263
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 138
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 2 cut(s) 155, 257
Tru9I TTAA 2 cut(s) 155, 257
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.