Rh5AG402900

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002887
Physical Location & Seq
Reverse (-)
69689179 .. 69692098
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG402900.1

Sequence Viewer

Length: 753 bp
ATGGGGAAGTGCTACCCAACCGTCAGCGAGGAGTACAAGAAGGCCATCGACAAGGCCAAGAGGAAGCTCAGAGGCCTCATAGCCGAGAAGAACTGCGCTCCTATCATGCTCCGTCTCGCATGGCACTCTGCTGGAACCTATGATGTGAAAACTAAGACTGGAGGTCCATTCGGAACCATGAAGCAGCCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGCTGGCTGGAGTTGTTGCTGTAGAGGTTACTGGTGGACCTGATGTTCCATTCCACCCAGGAAGAAAGGACAAGCCTGAACCACCTCCAGAAGGCCGTCTTCCTGATGCTGTCAAGGGTTCTGACCACTTGAGGGATGTGTTTGGCAAAACCATGGGCCTCAGCGACCAGGACATTGTTGCTCTCTCTGGTGGTCACACCTTGGGAAGGTGCCACAAGGAACGATCTGGATTTGAGGGACCCTGGACTCCCAACCCCCTTATTTTTGATAACTCATATTTCACGGAGCTGTTGAGTGGAGAGAAGGAAGGTCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCCGACCCTGTCTTCCGCCCTCTTGTTGACAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGCTTTGCCGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

250

Amino Acids

27.35

Weight (kDa)

5.83

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 25 - 227 2.5e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 501
AciI CCGC 2 cut(s) 652, 677
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 383, 424, 498
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 3 cut(s) 349, 459, 533
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 67, 191, 196, 295, 580, 613, 713, 733, 749
AluI AGCT 9 cut(s) 67, 191, 196, 295, 580, 613, 713, 733, 749
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 5 cut(s) 42, 54, 73, 385, 448
ApeKI GCWGC 2 cut(s) 184, 674
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 164, 329, 448, 530
AvaII GGWCC 3 cut(s) 164, 329, 530
BanI GGYRCC 1 cut(s) 501
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
BbsI GAAGAC 3 cut(s) 383, 596, 640
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 196, 661
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 351, 461, 535
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 2 cut(s) 312, 608
BisI GCNGC 2 cut(s) 185, 675
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 186, 676
Bme1390I CCNGG 3 cut(s) 351, 461, 535
Bme18I GGWCC 3 cut(s) 164, 329, 530
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 164, 329, 448, 530
BmiI GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
BmrFI CCNGG 3 cut(s) 351, 461, 535
BmsI GCATC 2 cut(s) 388, 676
BpiI GAAGAC 3 cut(s) 383, 596, 640
BpmI CTGGAG 3 cut(s) 180, 321, 363
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 4 cut(s) 349, 444, 492, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 424, 498
Bse1I ACTGG 2 cut(s) 163, 328
BseBI CCWGG 3 cut(s) 351, 461, 535
BseDI CCNNGG 4 cut(s) 349, 444, 492, 533
BseGI GGATG 2 cut(s) 433, 685
BseLI CCNNNNNNNGG 3 cut(s) 383, 424, 498
BseMII CTCAG 4 cut(s) 82, 183, 466, 720
BseNI ACTGG 2 cut(s) 163, 328
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 196, 661
BshFI GGCC 5 cut(s) 44, 56, 75, 387, 450
BshNI GGYRCC 1 cut(s) 501
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 383, 424, 498
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 5 cut(s) 44, 56, 75, 387, 450
Bsp143I GATC 1 cut(s) 515
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 652, 677
BspANI GGCC 5 cut(s) 44, 56, 75, 387, 450
BspCNI CTCAG 4 cut(s) 81, 184, 465, 721
BspLI GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
BspQI GCTCTTC 1 cut(s) 636
BspT107I GGYRCC 1 cut(s) 501
BsrI ACTGG 2 cut(s) 163, 328
BssECI CCNNGG 4 cut(s) 349, 444, 492, 533
BssMI GATC 1 cut(s) 515
BssT1I CCWWGG 2 cut(s) 444, 492
Bst2UI CCWGG 3 cut(s) 351, 461, 535
Bst4CI ACNGT 2 cut(s) 22, 206
Bst6I CTCTTC 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 189, 198, 297
BstDEI CTNAG 5 cut(s) 68, 153, 192, 452, 729
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 2 cut(s) 381, 496
BstF5I GGATG 2 cut(s) 433, 685
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
BstNI CCWGG 3 cut(s) 351, 461, 535
BstSCI CCNGG 3 cut(s) 349, 459, 533
BstSFI CTRYAG 2 cut(s) 312, 608
BstV1I GCAGC 2 cut(s) 196, 661
BstV2I GAAGAC 3 cut(s) 383, 596, 640
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 5 cut(s) 44, 56, 75, 387, 450
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 2 cut(s) 433, 685
Cac8I GCNNGC 3 cut(s) 189, 198, 297
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 164, 329, 448, 530
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 106, 120, 178, 445
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 68, 153, 192, 452, 729
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 636
Eam1105I GACNNNNNGTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 444, 492
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 164, 329, 530
EcoNI CCTNNNNNAGG 2 cut(s) 381, 496
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 349, 459, 533
EcoT14I CCWWGG 2 cut(s) 444, 492
ErhI CCWWGG 2 cut(s) 444, 492
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 123, 181, 448
FaiI YATR 9 cut(s) 80, 107, 121, 141, 179, 446, 568, 672, 705
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 105, 119, 177, 444
Fnu4HI GCNGC 2 cut(s) 185, 675
FokI GGATG 2 cut(s) 440, 692
Fsp4HI GCNGC 2 cut(s) 185, 675
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 185, 675
GsuI CTGGAG 3 cut(s) 180, 321, 363
HaeIII GGCC 5 cut(s) 44, 56, 75, 387, 450
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 109, 123, 181, 448
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 1 cut(s) 538
Hpy166II GTNNAC 2 cut(s) 329, 664
Hpy188I TCNGA 6 cut(s) 71, 173, 415, 640, 720, 730
Hpy188III TCNNGA 4 cut(s) 221, 380, 395, 519
Hpy8I GTNNAC 2 cut(s) 329, 664
HpyAV CCTTC 5 cut(s) 34, 377, 492, 589, 593
HpyCH4III ACNGT 2 cut(s) 22, 206
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
HpyF3I CTNAG 5 cut(s) 68, 153, 192, 452, 729
Hsp92II CATG 4 cut(s) 109, 123, 181, 448
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 530
Kzo9I GATC 1 cut(s) 515
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 5 cut(s) 103, 114, 244, 256, 577
Lsp1109I GCAGC 2 cut(s) 196, 661
LweI GCATC 2 cut(s) 388, 676
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 2 cut(s) 319, 485
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 7 cut(s) 100, 366, 383, 596, 623, 640, 695
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 641, 663
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 751
MspA1I CMGCKG 2 cut(s) 191, 295
MspR9I CCNGG 3 cut(s) 351, 461, 535
MvaI CCWGG 3 cut(s) 351, 461, 535
MwoI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 515
NlaIII CATG 4 cut(s) 109, 123, 181, 448
NlaIV GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 603
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 2 cut(s) 186, 676
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 349, 459, 533
PspGI CCWGG 3 cut(s) 349, 459, 533
PspN4I GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
PspPI GGNCC 4 cut(s) 164, 329, 448, 530
PspPPI RGGWCCY 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 644
PvuII CAGCTG 2 cut(s) 191, 295
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 2 cut(s) 185, 675
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 4 cut(s) 164, 329, 448, 530
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 351, 461, 535
SfaNI GCATC 2 cut(s) 388, 676
SfcI CTRYAG 2 cut(s) 312, 608
SinI GGWCC 3 cut(s) 164, 329, 530
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 2 cut(s) 652, 677
SspMI CTAG 1 cut(s) 710
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 349, 459, 533
StyI CCWWGG 2 cut(s) 444, 492
TaaI ACNGT 2 cut(s) 22, 206
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 184, 674
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 194, 696
TspGWI ACGGA 2 cut(s) 101, 590
Tth111I GACNNNGTC 1 cut(s) 644
VpaK11BI GGWCC 3 cut(s) 164, 329, 530
XagI CCTNNNNNAGG 2 cut(s) 381, 496
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.