Rw5G037890

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002887
Physical Location & Seq
Reverse (-)
66818854 .. 66821043
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037890.1

Sequence Viewer

Length: 756 bp
ATGGGGAAGTGCTACCCAACCGTCAGCGAGGAGTACAAGAAGGCCATCGACAAGGCCAAGAGGAAGCTCAGAGGCCTCATAGCCGAGAAGAACTGCGCTCCTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGAACCTATGATGTGAAAACTAAGACCGGAGGTCCATTCGGAACCATGAAGCAGCCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGCTGGCTGGAGTTGTTGCTGTAGAGGTTACTGGTGGACCTGATGTTCCATTCCACCCAGGAAGAGAGGACAAGCCTGAACCACCTCCAGAAGGCCGTCTTCCTGATGCTGTCAAGGGTTCTGACCACTTGAGGGATGTGTTTGGCAAAACCATGGGCCTCAGCGACCAGGACATTGTTGCTCTCTCTGGTGGTCACACCTTGGGAAGGTGCCACAAGGAACGATCTGGATTTGAGGGACCCTGGACTCCCAACCCCTTATTTTTGACAACTCATATTTCACGTGAGGAGCTGTTGAGTGGAGAGAAGGAAGGTCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCCGACCCTGTCTTCCGCCCTCTTGTTGACAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGCTTTGCCGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

251

Amino Acids

27.45

Weight (kDa)

5.78

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 25 - 228 5.8e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 501
AciI CCGC 2 cut(s) 655, 680
AcvI CACGTG 1 cut(s) 575
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 383, 424, 498
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 3 cut(s) 349, 459, 533
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 67, 191, 196, 295, 583, 616, 716, 736, 752
AluI AGCT 9 cut(s) 67, 191, 196, 295, 583, 616, 716, 736, 752
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 5 cut(s) 42, 54, 73, 385, 448
ApeKI GCWGC 2 cut(s) 184, 677
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 164, 329, 448, 530
AvaII GGWCC 3 cut(s) 164, 329, 530
BanI GGYRCC 1 cut(s) 501
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BbrPI CACGTG 1 cut(s) 575
BbsI GAAGAC 3 cut(s) 383, 599, 643
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 196, 664
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 351, 461, 535
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 2 cut(s) 312, 611
BisI GCNGC 2 cut(s) 185, 678
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 186, 679
Bme1390I CCNGG 3 cut(s) 351, 461, 535
Bme18I GGWCC 3 cut(s) 164, 329, 530
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 164, 329, 448, 530
BmiI GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
BmrFI CCNGG 3 cut(s) 351, 461, 535
BmsI GCATC 2 cut(s) 388, 679
BpiI GAAGAC 3 cut(s) 383, 599, 643
BpmI CTGGAG 2 cut(s) 321, 363
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 349, 444, 492, 533
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 424, 498
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 3 cut(s) 351, 461, 535
BseDI CCNNGG 4 cut(s) 349, 444, 492, 533
BseGI GGATG 2 cut(s) 433, 688
BseLI CCNNNNNNNGG 3 cut(s) 383, 424, 498
BseMII CTCAG 4 cut(s) 82, 183, 466, 723
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 3 cut(s) 44, 90, 593
BseXI GCAGC 2 cut(s) 196, 664
BshFI GGCC 5 cut(s) 44, 56, 75, 387, 450
BshNI GGYRCC 1 cut(s) 501
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 383, 424, 498
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 5 cut(s) 44, 56, 75, 387, 450
Bsp143I GATC 1 cut(s) 515
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 655, 680
BspANI GGCC 5 cut(s) 44, 56, 75, 387, 450
BspCNI CTCAG 4 cut(s) 81, 184, 465, 724
BspLI GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 501
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 4 cut(s) 349, 444, 492, 533
BssMI GATC 1 cut(s) 515
BssT1I CCWWGG 2 cut(s) 444, 492
Bst2UI CCWGG 3 cut(s) 351, 461, 535
Bst4CI ACNGT 2 cut(s) 22, 206
Bst6I CTCTTC 2 cut(s) 349, 639
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 189, 198, 297
BstDEI CTNAG 5 cut(s) 68, 153, 192, 452, 732
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 2 cut(s) 381, 496
BstF5I GGATG 2 cut(s) 433, 688
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 698, 707, 733
BstNI CCWGG 3 cut(s) 351, 461, 535
BstSCI CCNGG 3 cut(s) 349, 459, 533
BstSFI CTRYAG 2 cut(s) 312, 611
BstV1I GCAGC 2 cut(s) 196, 664
BstV2I GAAGAC 3 cut(s) 383, 599, 643
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 5 cut(s) 44, 56, 75, 387, 450
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 2 cut(s) 433, 688
Cac8I GCNNGC 3 cut(s) 189, 198, 297
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 164, 329, 448, 530
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 106, 120, 178, 445
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 68, 153, 192, 452, 732
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 349, 639
Eam1105I GACNNNNNGTC 1 cut(s) 162
EarI CTCTTC 2 cut(s) 349, 639
EciI GGCGGA 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 444, 492
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 164, 329, 530
Eco72I CACGTG 1 cut(s) 575
EcoNI CCTNNNNNAGG 2 cut(s) 381, 496
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 349, 459, 533
EcoT14I CCWWGG 2 cut(s) 444, 492
ErhI CCWWGG 2 cut(s) 444, 492
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 123, 181, 448
FaiI YATR 9 cut(s) 80, 107, 121, 141, 179, 446, 567, 675, 708
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 105, 119, 177, 444
Fnu4HI GCNGC 2 cut(s) 185, 678
FokI GGATG 2 cut(s) 440, 695
Fsp4HI GCNGC 2 cut(s) 185, 678
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 185, 678
GsuI CTGGAG 2 cut(s) 321, 363
HaeIII GGCC 5 cut(s) 44, 56, 75, 387, 450
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 109, 123, 181, 448
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 159
Hpy166II GTNNAC 2 cut(s) 329, 667
Hpy188I TCNGA 6 cut(s) 71, 173, 415, 643, 723, 733
Hpy188III TCNNGA 4 cut(s) 221, 380, 395, 519
Hpy8I GTNNAC 2 cut(s) 329, 667
HpyAV CCTTC 5 cut(s) 34, 377, 492, 592, 596
HpyCH4III ACNGT 2 cut(s) 22, 206
HpyCH4IV ACGT 1 cut(s) 574
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 698, 707, 733
HpyF3I CTNAG 5 cut(s) 68, 153, 192, 452, 732
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 4 cut(s) 109, 123, 181, 448
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 530
Kzo9I GATC 1 cut(s) 515
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 5 cut(s) 103, 114, 244, 256, 580
Lsp1109I GCAGC 2 cut(s) 196, 664
LweI GCATC 2 cut(s) 388, 679
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 2 cut(s) 319, 485
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 7 cut(s) 100, 366, 383, 599, 626, 643, 698
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 644, 666
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 1 cut(s) 754
MspA1I CMGCKG 2 cut(s) 191, 295
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 3 cut(s) 351, 461, 535
MvaI CCWGG 3 cut(s) 351, 461, 535
MwoI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 698, 707, 733
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 515
NlaIII CATG 4 cut(s) 109, 123, 181, 448
NlaIV GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 639
PdmI GAANNNNTTC 1 cut(s) 606
PflFI GACNNNGTC 1 cut(s) 647
PkrI GCNGC 2 cut(s) 186, 679
PleI GAGTC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 349, 459, 533
PspCI CACGTG 1 cut(s) 575
PspGI CCWGG 3 cut(s) 349, 459, 533
PspN4I GGNNCC 6 cut(s) 136, 175, 246, 503, 531, 532
PspPI GGNCC 4 cut(s) 164, 329, 448, 530
PspPPI RGGWCCY 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 647
PvuII CAGCTG 2 cut(s) 191, 295
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 1 cut(s) 754
SatI GCNGC 2 cut(s) 185, 678
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 4 cut(s) 164, 329, 448, 530
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 351, 461, 535
SfaNI GCATC 2 cut(s) 388, 679
SfcI CTRYAG 2 cut(s) 312, 611
SinI GGWCC 3 cut(s) 164, 329, 530
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 2 cut(s) 655, 680
SspMI CTAG 1 cut(s) 713
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 349, 459, 533
StyI CCWWGG 2 cut(s) 444, 492
TaaI ACNGT 2 cut(s) 22, 206
TaiI ACGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 1 cut(s) 754
Tru9I TTAA 1 cut(s) 754
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 184, 677
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 194, 699
TspGWI ACGGA 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 647
VpaK11BI GGWCC 3 cut(s) 164, 329, 530
XagI CCTNNNNNAGG 2 cut(s) 381, 496
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.