Rroxscaffold_1G00019220

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002887
Physical Location & Seq
Forward (+)
23463486 .. 23466172
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019220.1

Sequence Viewer

Length: 753 bp
ATGGGGAAGTGCTACCCAAACGTCAGGGAGGAGTACAAGAAGGCCATCGACAAGGCCAAGAGGAAGCTCAGAGGCCTCATCGCCGAGAAGAACTGCGCTCCTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGAACCTATGATGTGAAAACTAAGACTGGAGGTCCATTCGGAACCATGAAGCAGCCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGCTGGCTGGAGTTGTTGCTGTAGAGGTTACTGGTGGACCTGATGTTCCATTCCACCCAGGAAGAGAGGACAAGCCTCAACCACCTCCAGAAGGCCGTCTTCCGGACGCTGGCAAGGGTTCTGACCACTTGAGGGATGTGTTTGGAAAAACCATGGGCCTCAGCGACCAGGACATTGTTGCTCTCTCTGGTGGTCACACCTTGGGAAGGGCACACAAGGAACGTTCTGGATTTGAGGGACCCTGGACTCCCAACCCTCTTATCTTTGACAACTCATATTTCACGGAGCTGTTGAGTGGAGAGAAGGAAGGTCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCCGACCCTGTCTTCCGCCCTCTTGTTGACAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGCTTTGCCGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

250

Amino Acids

27.36

Weight (kDa)

5.83

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 18 - 227 1.6e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 2 cut(s) 652, 677
AclI AACGTT 1 cut(s) 514
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 5 cut(s) 383, 394, 401, 424, 498
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 3 cut(s) 349, 459, 533
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 67, 191, 196, 295, 580, 613, 713, 733, 749
AluI AGCT 9 cut(s) 67, 191, 196, 295, 580, 613, 713, 733, 749
Alw26I GTCTC 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 5 cut(s) 42, 54, 73, 385, 448
ApeKI GCWGC 2 cut(s) 184, 674
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 164, 329, 448, 530
AvaII GGWCC 3 cut(s) 164, 329, 530
BaeGI GKGCMC 1 cut(s) 505
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
BbsI GAAGAC 3 cut(s) 383, 596, 640
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 196, 661
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 351, 461, 535
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 2 cut(s) 312, 608
BisI GCNGC 2 cut(s) 185, 675
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 186, 676
Bme1390I CCNGG 3 cut(s) 351, 461, 535
Bme18I GGWCC 3 cut(s) 164, 329, 530
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 164, 329, 448, 530
BmiI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BmrFI CCNGG 3 cut(s) 351, 461, 535
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 3 cut(s) 383, 596, 640
BpmI CTGGAG 3 cut(s) 180, 321, 363
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 4 cut(s) 349, 444, 492, 533
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 5 cut(s) 383, 394, 401, 424, 498
Bse1I ACTGG 2 cut(s) 163, 328
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 3 cut(s) 351, 461, 535
BseDI CCNNGG 4 cut(s) 349, 444, 492, 533
BseGI GGATG 2 cut(s) 433, 685
BseLI CCNNNNNNNGG 5 cut(s) 383, 394, 401, 424, 498
BseMII CTCAG 4 cut(s) 82, 183, 466, 720
BseNI ACTGG 2 cut(s) 163, 328
BseRI GAGGAG 2 cut(s) 44, 90
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 196, 661
BshFI GGCC 5 cut(s) 44, 56, 75, 387, 450
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 5 cut(s) 383, 394, 401, 424, 498
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 5 cut(s) 44, 56, 75, 387, 450
Bsp1286I GDGCHC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 394
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 652, 677
BspANI GGCC 5 cut(s) 44, 56, 75, 387, 450
BspCNI CTCAG 4 cut(s) 81, 184, 465, 721
BspEI TCCGGA 1 cut(s) 394
BspLI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BspQI GCTCTTC 1 cut(s) 636
BsrI ACTGG 2 cut(s) 163, 328
BssECI CCNNGG 4 cut(s) 349, 444, 492, 533
BssT1I CCWWGG 2 cut(s) 444, 492
Bst2UI CCWGG 3 cut(s) 351, 461, 535
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 349, 636
BstC8I GCNNGC 4 cut(s) 189, 198, 297, 403
BstDEI CTNAG 5 cut(s) 68, 153, 192, 452, 729
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 2 cut(s) 381, 496
BstF5I GGATG 2 cut(s) 433, 685
BstHHI GCGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
BstNI CCWGG 3 cut(s) 351, 461, 535
BstSCI CCNGG 3 cut(s) 349, 459, 533
BstSFI CTRYAG 2 cut(s) 312, 608
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 196, 661
BstV2I GAAGAC 3 cut(s) 383, 596, 640
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 5 cut(s) 44, 56, 75, 387, 450
BtgI CCRYGG 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 2 cut(s) 433, 685
Cac8I GCNNGC 4 cut(s) 189, 198, 297, 403
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 164, 329, 448, 530
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 106, 120, 178, 445
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 68, 153, 192, 452, 729
DriI GACNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 349, 636
Eam1105I GACNNNNNGTC 1 cut(s) 162
EarI CTCTTC 2 cut(s) 349, 636
EciI GGCGGA 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 444, 492
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 164, 329, 530
EcoNI CCTNNNNNAGG 2 cut(s) 381, 496
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 349, 459, 533
EcoT14I CCWWGG 2 cut(s) 444, 492
ErhI CCWWGG 2 cut(s) 444, 492
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 123, 181, 448
FaiI YATR 8 cut(s) 107, 121, 141, 179, 446, 568, 672, 705
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 105, 119, 177, 444
Fnu4HI GCNGC 2 cut(s) 185, 675
FokI GGATG 2 cut(s) 440, 692
Fsp4HI GCNGC 2 cut(s) 185, 675
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 97
GluI GCNGC 2 cut(s) 185, 675
GsuI CTGGAG 3 cut(s) 180, 321, 363
HaeIII GGCC 5 cut(s) 44, 56, 75, 387, 450
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 109, 123, 181, 448
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 329, 664
Hpy188I TCNGA 6 cut(s) 71, 173, 415, 640, 720, 730
Hpy188III TCNNGA 4 cut(s) 221, 380, 395, 519
Hpy8I GTNNAC 2 cut(s) 329, 664
HpyAV CCTTC 5 cut(s) 34, 377, 492, 589, 593
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 21, 514
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
HpyF3I CTNAG 5 cut(s) 68, 153, 192, 452, 729
HpySE526I ACGT 2 cut(s) 21, 514
Hsp92II CATG 4 cut(s) 109, 123, 181, 448
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 5 cut(s) 103, 114, 244, 256, 577
Lsp1109I GCAGC 2 cut(s) 196, 661
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 21, 514
MaeIII GTNAC 2 cut(s) 319, 485
MboII GAAGA 7 cut(s) 100, 366, 383, 596, 623, 640, 695
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 641, 663
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 751
MspA1I CMGCKG 2 cut(s) 191, 295
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 351, 461, 535
MvaI CCWGG 3 cut(s) 351, 461, 535
MwoI GCNNNNNNNGC 7 cut(s) 193, 197, 206, 244, 695, 704, 730
NcoI CCATGG 1 cut(s) 444
NlaIII CATG 4 cut(s) 109, 123, 181, 448
NlaIV GGNNCC 5 cut(s) 136, 175, 246, 531, 532
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 603
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 2 cut(s) 186, 676
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 530
Psp1406I AACGTT 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 349, 459, 533
PspGI CCWGG 3 cut(s) 349, 459, 533
PspN4I GGNNCC 5 cut(s) 136, 175, 246, 531, 532
PspPI GGNCC 4 cut(s) 164, 329, 448, 530
PspPPI RGGWCCY 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 644
PvuII CAGCTG 2 cut(s) 191, 295
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 2 cut(s) 185, 675
Sau96I GGNCC 4 cut(s) 164, 329, 448, 530
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 351, 461, 535
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 2 cut(s) 312, 608
SinI GGWCC 3 cut(s) 164, 329, 530
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 2 cut(s) 652, 677
SspMI CTAG 1 cut(s) 710
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 349, 459, 533
StyI CCWWGG 2 cut(s) 444, 492
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 24, 517
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 184, 674
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 194, 696
TspGWI ACGGA 2 cut(s) 101, 590
Tth111I GACNNNGTC 1 cut(s) 644
VpaK11BI GGWCC 3 cut(s) 164, 329, 530
XagI CCTNNNNNAGG 2 cut(s) 381, 496
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.