Rh5CG440000

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002887
Physical Location & Seq
Reverse (-)
61018466 .. 61019092
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG440000.1

Sequence Viewer

Length: 327 bp
ATGACATGCATGTTATTATCAATGAATAGTGCTGTTTTCTCTTCGCCTAATGATGATGGTATATTTCAGGGAAGGGCACACAAGGAACGCTCTGGATTTGAGGGACCCTGGACTCCCAACCCTCTTATCTTTGACAACTCATATTTCACGGAGCTGTTGAGTGGAGAGAAGGAAGGTCTTCTACAGCTTCCAACTGACAAGGCTCTTCTGTCCGACCCTGTCTTCCGCCCTCTTGTTGACAAATATGCTGCGGATGAAGATGCTTTCTTTGCTGATTATGCTCTAGCTCATCAGAGGCTCTCTGAGCTTGGCTTTGCCGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

4.41

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 85 8.8e-07 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 226, 251
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 5 cut(s) 154, 187, 287, 307, 323
AluI AGCT 5 cut(s) 154, 187, 287, 307, 323
ApeKI GCWGC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 2 cut(s) 170, 214
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 109
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 105, 106
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 2 cut(s) 170, 214
BsaJI CCNNGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 79
BspACI CCGC 2 cut(s) 226, 251
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 105, 106
BspQI GCTCTTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 46, 210
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 304
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 2 cut(s) 9, 13
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 2 cut(s) 170, 214
BtsCI GGATG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 2 cut(s) 6, 10
CviJI RGCY 8 cut(s) 154, 187, 203, 287, 298, 307, 312, 323
CviKI_1 RGCY 8 cut(s) 154, 187, 203, 287, 298, 307, 312, 323
DdeI CTNAG 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 46, 210
EarI CTCTTC 2 cut(s) 46, 210
EciI GGCGGA 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 11
FaeI CATG 2 cut(s) 9, 13
FaiI YATR 6 cut(s) 7, 11, 62, 142, 246, 279
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 5, 9
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 9, 13
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 214, 294, 304
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 66, 163, 167
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 304
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 9, 13
KflI GGGWCCC 1 cut(s) 104
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 53, 78, 94, 121, 231
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 284
MboII GAAGA 5 cut(s) 33, 170, 197, 214, 269
MhlI GDGCHC 1 cut(s) 79
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 215, 237
MnlI CCTC 4 cut(s) 94, 132, 240, 288
Mph1103I ATGCAT 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 304
NlaIII CATG 2 cut(s) 9, 13
NlaIV GGNNCC 2 cut(s) 105, 106
NsiI ATGCAT 1 cut(s) 11
NspI RCATGY 2 cut(s) 9, 13
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 105, 106
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 156, 178, 189, 289, 309, 325
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 104
SsiI CCGC 2 cut(s) 226, 251
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 107
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 38, 270
TspGWI ACGGA 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 2 cut(s) 9, 13
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.