Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002887

Physical Location & Seq

Genomic Coordinates Forward (+)

49984226 .. 50004971

Gene Structure 20746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTCTCATTTCCACGCTCCTCGCTCCAGCTCGGCGGCGTCGTCTTGCAACTCCGGAGATCCATTCGAAACCATGAAGCGATCACCGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGTTGTCGTGCTCTTAGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCCGACTTTGACCAGTTGGGTGGAGTTGCTGCCCTATACAAAAAAAAGAGAAAGATTCGGACATACCAGATCGTGATGGACCTATCGCTCTTTCTCTTGCTATACTACACGTGGATACGAGATGATGCTACCATAATTGTCAAGTGCATAGTTGAGAAGGACAGGAAACCACTCGTGTTGTCGATCCTCCCACCAATTTTCTTCAGACCACTTATTTGGGCCAGGGGGTTGTTAAAGGTGAGAGCTTTCACCTTGGGCTTGATGTGTAAGGGAGTAGAGACTCCTTGTCCATCCGGGCCGGTTGTCCTTCGTTGTGCGAAGGAGATAGGTTGGGTCGATAAGGAGCTCATGAGAGAGATCCTCATTCGACTATATGCAAAGAAACCCGAGATCCGAAGAGGTGGTTGCAGAGGAGTACGAACTCTTCCATGGCAGGGCAAGGTAGACAAGAAGAAGGAGATTTGTTCACGGTTTGGACTTCTGAGGAGCAAAGGAAGAACCAAAACTGAGAATGACCATGAGAACAAATCTGAGATCGACACTCTCCCCTTTCCCCGACCTCTCTCTTTCTCGTCTTTCCTCTCGCCATCTCCGGTGAACACCATTCCCGGGCACGACCGCACTTTAGCACCTCCATCAAACAGTCTCACATCCAAATCCGATCGAGCCCAACCAAAATCATCACCATACATCACCGTCGGCTCCACTTGCGATCAACACAGCTTCACCGCCGTGTTGTCTAGCCAAAGCTTCCATTCCGGTCATCTCGCAACACACAGCCACCATCGCTCGGTCCAGCTGGCGGTGAGTACCTCATTCCATCGATTTTCTTCGCCGATCGATGACGAACAACGCTGCGAAGCATCGTCCGAGCGGTGGCTCCACATGATGCACATGCCTTCGATCTCCGGTTTCCGGCTTGAAAACAGCTCAACGACCTCCCTAATCGAAATCGAGCATCACCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

381

Amino Acids

43.01

Weight (kDa)

9.6

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890
fragaria_vesca	FvH4_3g33910
malus_domestica	MD03G1108200.v1.1 MD11G1121400.v1.1
prunus_persica	Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1
pyrus_communis	pycom03g08820 pycom11g10330
rosa_chinensis	RchiOBHm_Chr5g0061461
rosa_laevigata	RLG00000035480
rosa_multiflora	Rmu_sc0001527.1_g000034 Rmu_sc0003467.1_g000017 Rmu_sc0005050.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009150 Rroxscaffold_1G00019220 Rroxscaffold_3G00255660 Rroxscaffold_5G00336730 Rroxscaffold_5G00368820
rosa_rugosa	Rorug05G0340500
rosa_samantha	Rh1AG201500 Rh1CG186400 Rh3CG141800 Rh4DG107700 Rh4DG192700 Rh5AG402900 Rh5BG415300 Rh5BG484500 Rh5CG440000 Rh5DG429900
rosa_wichuraiana	Rw5G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1048
AccI	GTMKAC	1 cut(s)	618
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	5 cut(s)	36, 793, 903, 977, 1048
AclWI	GGATC	4 cut(s)	54, 352, 526, 559
AcuI	CTGAAG	1 cut(s)	361
AcvI	CACGTG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	591, 985
AfiI	CCNNNNNNNGG	6 cut(s)	608, 783, 964, 976, 1050, 1089
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	1097
AhdI	GACNNNNNGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	395
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	8 cut(s)	31, 91, 419, 520, 897, 924, 973, 1104
AluI	AGCT	8 cut(s)	31, 91, 419, 520, 897, 924, 973, 1104
Alw21I	GWGCWC	2 cut(s)	135, 522
Alw26I	GTCTC	2 cut(s)	446, 824
AlwI	GGATC	4 cut(s)	54, 352, 526, 559
Ama87I	CYCGRG	2 cut(s)	560, 782
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	2 cut(s)	393, 470
ApeKI	GCWGC	2 cut(s)	203, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspS9I	GGNCC	4 cut(s)	253, 393, 470, 967
AsuC2I	CCSGG	3 cut(s)	469, 783, 784
AsuHPI	GGTGA	9 cut(s)	76, 415, 424, 781, 849, 859, 892, 991, 1127
AsuII	TTCGAA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	560, 782
AvaII	GGWCC	2 cut(s)	253, 967
BaeGI	GKGCMC	1 cut(s)	789
BanII	GRGCYC	2 cut(s)	522, 844
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BauI	CACGAG	1 cut(s)	347
BbrPI	CACGTG	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	135, 522
BbvI	GCAGC	2 cut(s)	190, 1016
BccI	CCATC	6 cut(s)	244, 472, 769, 817, 966, 1002
BceAI	ACGGC	1 cut(s)	890
BciT130I	CCWGG	1 cut(s)	397
BciVI	GTATCC	1 cut(s)	282
BcnI	CCSGG	3 cut(s)	469, 783, 784
BcoDI	GTCTC	2 cut(s)	446, 824
BfaI	CTAG	1 cut(s)	915
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	37, 204, 1030
BlsI	GCNGC	3 cut(s)	38, 205, 1031
Bme1390I	CCNGG	4 cut(s)	397, 469, 783, 784
Bme18I	GGWCC	2 cut(s)	253, 967
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmeT110I	CYCGRG	2 cut(s)	560, 782
BmgT120I	GGNCC	4 cut(s)	253, 393, 470, 967
BmiI	GGNNCC	2 cut(s)	877, 1055
BmrFI	CCNGG	4 cut(s)	397, 469, 783, 784
BmsI	GCATC	4 cut(s)	289, 1046, 1053, 1141
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	67
BpuMI	CCSGG	3 cut(s)	469, 783, 784
Bsa29I	ATCGAT	2 cut(s)	997, 1014
BsaAI	YACGTR	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	396, 426, 602, 782
BsaWI	WCCGGW	4 cut(s)	54, 766, 932, 1082
Bsc4I	CCNNNNNNNGG	6 cut(s)	608, 783, 964, 976, 1050, 1089
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	397
BseCI	ATCGAT	2 cut(s)	997, 1014
BseDI	CCNNGG	4 cut(s)	396, 426, 602, 782
BseGI	GGATG	2 cut(s)	464, 824
BseLI	CCNNNNNNNGG	6 cut(s)	608, 783, 964, 976, 1050, 1089
BseMII	CTCAG	3 cut(s)	647, 672, 696
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	3 cut(s)	10, 600, 673
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	190, 1016
Bsh1285I	CGRYCG	3 cut(s)	793, 838, 1014
BshFI	GGCC	2 cut(s)	395, 472
BshVI	ATCGAT	2 cut(s)	997, 1014
BsiEI	CGRYCG	3 cut(s)	793, 838, 1014
BsiHKAI	GWGCWC	2 cut(s)	135, 522
BsiHKCI	CYCGRG	2 cut(s)	560, 782
BsiSI	CCGG	8 cut(s)	55, 468, 473, 767, 783, 933, 1083, 1090
BslI	CCNNNNNNNGG	6 cut(s)	608, 783, 964, 976, 1050, 1089
BsmAI	GTCTC	2 cut(s)	446, 824
BsnI	GGCC	2 cut(s)	395, 472
BsoBI	CYCGRG	2 cut(s)	560, 782
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	4 cut(s)	135, 522, 789, 844
Bsp13I	TCCGGA	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	5 cut(s)	36, 793, 903, 977, 1048
BspANI	GGCC	2 cut(s)	395, 472
BspCNI	CTCAG	3 cut(s)	648, 673, 697
BspDI	ATCGAT	2 cut(s)	997, 1014
BspEI	TCCGGA	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	877, 1055
BspPI	GGATC	4 cut(s)	54, 352, 526, 559
BspT104I	TTCGAA	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	1048
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	396, 426, 602, 782
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	426, 602
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	4 cut(s)	101, 645, 818, 871
Bst6I	CTCTTC	2 cut(s)	565, 603
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	93, 975
BstDEI	CTNAG	4 cut(s)	136, 656, 681, 705
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	464, 824
BstMAI	GTCTC	2 cut(s)	446, 824
BstMCI	CGRYCG	3 cut(s)	793, 838, 1014
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 139, 882, 960
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	1072
BstSCI	CCNGG	4 cut(s)	395, 467, 781, 782
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	2 cut(s)	190, 1016
BstX2I	RGATCY	3 cut(s)	59, 531, 564
BstXI	CCANNNNNNTGG	2 cut(s)	194, 390
BstYI	RGATCY	3 cut(s)	59, 531, 564
Bsu15I	ATCGAT	2 cut(s)	997, 1014
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	395, 472
BsuTUI	ATCGAT	2 cut(s)	997, 1014
BtgI	CCRYGG	1 cut(s)	602
BtgZI	GCGATG	1 cut(s)	944
BtsCI	GGATG	2 cut(s)	464, 824
Cac8I	GCNNGC	2 cut(s)	93, 975
CciI	TCATGA	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	4 cut(s)	253, 393, 470, 967
Cfr9I	CCCGGG	1 cut(s)	782
ClaI	ATCGAT	2 cut(s)	997, 1014
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	590, 984
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	7 cut(s)	74, 523, 603, 692, 1060, 1069, 1143
CviQI	GTAC	2 cut(s)	590, 984
DdeI	CTNAG	4 cut(s)	136, 656, 681, 705
DriI	GACNNNNNGTC	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	565, 603
Eam1105I	GACNNNNNGTC	1 cut(s)	459
EarI	CTCTTC	2 cut(s)	565, 603
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	426, 602
Eco24I	GRGCYC	2 cut(s)	522, 844
Eco47I	GGWCC	2 cut(s)	253, 967
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	560, 782
EcoICRI	GAGCTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	426, 602
EcoT38I	GRGCYC	2 cut(s)	522, 844
ErhI	CCWWGG	2 cut(s)	426, 602
FaeI	CATG	7 cut(s)	77, 526, 606, 695, 1063, 1072, 1146
FatI	CATG	7 cut(s)	73, 522, 602, 691, 1059, 1068, 1142
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	3 cut(s)	37, 204, 1030
FokI	GGATG	2 cut(s)	451, 811
FriOI	GRGCYC	2 cut(s)	522, 844
Fsp4HI	GCNGC	3 cut(s)	37, 204, 1030
FspBI	CTAG	1 cut(s)	915
GluI	GCNGC	3 cut(s)	37, 204, 1030
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	395, 472
HapII	CCGG	8 cut(s)	55, 468, 473, 767, 783, 933, 1083, 1090
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	7 cut(s)	77, 526, 606, 695, 1063, 1072, 1146
HindIII	AAGCTT	1 cut(s)	922
HinfI	GANTC	2 cut(s)	229, 454
HpaII	CCGG	8 cut(s)	55, 468, 473, 767, 783, 933, 1083, 1090
HphI	GGTGA	9 cut(s)	76, 415, 424, 781, 849, 859, 892, 991, 1127
Hpy166II	GTNNAC	3 cut(s)	619, 641, 772
Hpy188I	TCNGA	7 cut(s)	234, 380, 569, 657, 706, 835, 1045
Hpy188III	TCNNGA	4 cut(s)	55, 116, 247, 523
Hpy8I	GTNNAC	3 cut(s)	619, 641, 772
Hpy99I	CGWCG	2 cut(s)	44, 875
HpyAV	CCTTC	5 cut(s)	325, 487, 491, 622, 1083
HpyCH4III	ACNGT	4 cut(s)	101, 645, 818, 871
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	5 cut(s)	49, 321, 551, 582, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 139, 882, 960
HpyF3I	CTNAG	4 cut(s)	136, 656, 681, 705
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	7 cut(s)	77, 526, 606, 695, 1063, 1072, 1146
Kpn2I	TCCGGA	1 cut(s)	54
LmnI	GCTCC	7 cut(s)	23, 30, 151, 517, 660, 881, 1059
Lsp1109I	GCAGC	2 cut(s)	190, 1016
LweI	GCATC	4 cut(s)	289, 1046, 1053, 1141
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	1048
MboII	GAAGA	6 cut(s)	367, 582, 590, 637, 681, 996
MflI	RGATCY	3 cut(s)	59, 531, 564
MhlI	GDGCHC	4 cut(s)	135, 522, 789, 844
MluCI	AATT	2 cut(s)	309, 369
MlyI	GAGTC	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	8 cut(s)	55, 468, 473, 767, 783, 933, 1083, 1090
MspR9I	CCNGG	4 cut(s)	397, 469, 783, 784
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	101, 139, 882, 960
NciI	CCSGG	3 cut(s)	469, 783, 784
NcoI	CCATGG	1 cut(s)	602
NlaIII	CATG	7 cut(s)	77, 526, 606, 695, 1063, 1072, 1146
NlaIV	GGNNCC	2 cut(s)	877, 1055
NmeAIII	GCCGAG	1 cut(s)	12
NspI	RCATGY	1 cut(s)	1072
NspV	TTCGAA	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	905
PagI	TCATGA	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	38, 205, 1031
Ple19I	CGATCG	2 cut(s)	838, 1014
PleI	GAGTC	1 cut(s)	448
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	395
PspCI	CACGTG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	877, 1055
PspPI	GGNCC	4 cut(s)	253, 393, 470, 967
PsuI	RGATCY	3 cut(s)	59, 531, 564
PvuI	CGATCG	2 cut(s)	838, 1014
PvuII	CAGCTG	1 cut(s)	973
RsaI	GTAC	2 cut(s)	591, 985
RsaNI	GTAC	2 cut(s)	590, 984
RseI	CAYNNNNRTG	1 cut(s)	905
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	3 cut(s)	37, 204, 1030
Sau96I	GGNCC	4 cut(s)	253, 393, 470, 967
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	4 cut(s)	397, 469, 783, 784
SduI	GDGCHC	4 cut(s)	135, 522, 789, 844
SfaNI	GCATC	4 cut(s)	289, 1046, 1053, 1141
SfuI	TTCGAA	1 cut(s)	67
SinI	GGWCC	2 cut(s)	253, 967
SmaI	CCCGGG	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	905
Sse9I	AATT	2 cut(s)	309, 369
SsiI	CCGC	5 cut(s)	36, 793, 903, 977, 1048
SspMI	CTAG	1 cut(s)	915
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	395, 467, 781, 782
StyI	CCWWGG	2 cut(s)	426, 602
TaaI	ACNGT	4 cut(s)	101, 645, 818, 871
TaiI	ACGT	1 cut(s)	287
TaqII	GACCGA	1 cut(s)	955
TasI	AATT	2 cut(s)	309, 369
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseI	GCWGC	2 cut(s)	203, 1029
TspDTI	ATGAA	1 cut(s)	90
TspMI	CCCGGG	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	253, 967
XceI	RCATGY	1 cut(s)	1072
XmaI	CCCGGG	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.