Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002887

Physical Location & Seq

Genomic Coordinates Reverse (-)

11695248 .. 11695683

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAGGAAACCAAAATATGTATGGATCTTCATCTGAATTTTGATCGGAAATTCAGAATCAGTGGAGAAGATGATACAAGCGGTGATGGTGATAAAATACTCAGGGCAAGCCTCGCCTTGCCAAGTTTTACGAATTTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTATGCTGACTTCTACCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

4.72

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890
fragaria_vesca	FvH4_3g33910
malus_domestica	MD03G1108200.v1.1 MD11G1121400.v1.1
prunus_persica	Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1
pyrus_communis	pycom03g08820 pycom11g10330
rosa_chinensis	RchiOBHm_Chr5g0061461
rosa_laevigata	RLG00000035480
rosa_multiflora	Rmu_sc0001527.1_g000034 Rmu_sc0003467.1_g000017 Rmu_sc0005050.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009150 Rroxscaffold_1G00019220 Rroxscaffold_3G00255660 Rroxscaffold_5G00336730 Rroxscaffold_5G00368820
rosa_rugosa	Rorug05G0340500
rosa_samantha	Rh1AG201500 Rh1CG186400 Rh3CG141800 Rh4DG107700 Rh4DG192700 Rh5AG402900 Rh5BG415300 Rh5BG484500 Rh5CG440000 Rh5DG429900
rosa_wichuraiana	Rw5G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	3 cut(s)	37, 50, 133
AlwI	GGATC	1 cut(s)	33
ApoI	RAATTY	3 cut(s)	37, 50, 133
AsuHPI	GGTGA	2 cut(s)	95, 101
BccI	CCATC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	25, 43
BspACI	CCGC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	33
BssMI	GATC	2 cut(s)	25, 43
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	28, 46
BstMBI	GATC	2 cut(s)	25, 43
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 148
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	109
CviJI	RGCY	3 cut(s)	111, 142, 151
CviKI_1	RGCY	3 cut(s)	111, 142, 151
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	27, 45
DpnII	GATC	2 cut(s)	25, 43
FaiI	YATR	3 cut(s)	19, 23, 183
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	2 cut(s)	95, 101
Hpy188I	TCNGA	3 cut(s)	36, 48, 56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 148
HpyF3I	CTNAG	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	25, 43
LmnI	GCTCC	2 cut(s)	148, 160
LpnPI	CCDG	2 cut(s)	88, 124
MalI	GATC	2 cut(s)	27, 45
MboI	GATC	2 cut(s)	25, 43
MboII	GAAGA	2 cut(s)	20, 80
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	37, 50, 133
MnlI	CCTC	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	113, 148
NdeII	GATC	2 cut(s)	25, 43
NlaIV	GGNNCC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	25, 43
SgeI	CNNG	9 cut(s)	90, 115, 120, 125, 130, 135, 151, 157, 169
Sse9I	AATT	3 cut(s)	37, 50, 133
SsiI	CCGC	1 cut(s)	81
TasI	AATT	3 cut(s)	37, 50, 133
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	37, 50, 133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.