Rh5DG429900

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002887
Physical Location & Seq
Reverse (-)
68662300 .. 68665361
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG429900.1

Sequence Viewer

Length: 579 bp
ATGGGGAAGTGCTACCCAACCGTCAGCGAGGAGTACAAGAAGGCCATCGACAAGGCCAAGAGGAAGCTCAGAGGCCTCATCGCCGAGAAGAACTGCGCTCCTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGAACCTATGATGTGAAAACTAAGACTGGAGGTCCATTCGGAACCATGAAGCAGCCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGCTGGCTGGAGTTGTTGCTGTAGAGGTTACTGGTGGACCTGATGTTCCATTCCACCCAGGAAGAGAGGACAAGCCTGCACCACCTCCAGAAGGCCGTCTTCCTGACGCTGGCAAGGGTTCTGACCACTTGAGGGATGTGTTTGGAAAAACCATGGGCCTCAGCGACCAGGACATTGTTGCTCTCTCTGGTGGTCACACCTTGGGAAGGGCACACAAGGAACGCTCTGGATTTGAGGGACCCTGGACTCCCAACCCTCTTATCTTTGACAACTCATATTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

192

Amino Acids

20.84

Weight (kDa)

7.78

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 25 - 171 1.1e-35 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 576
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 3 cut(s) 349, 459, 533
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 4 cut(s) 67, 191, 196, 295
AluI AGCT 4 cut(s) 67, 191, 196, 295
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 5 cut(s) 42, 54, 73, 385, 448
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 4 cut(s) 164, 329, 448, 530
AvaII GGWCC 3 cut(s) 164, 329, 530
BaeGI GKGCMC 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 383
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 351, 461, 535
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 351, 461, 535
Bme18I GGWCC 3 cut(s) 164, 329, 530
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 164, 329, 448, 530
BmiI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BmrFI CCNGG 3 cut(s) 351, 461, 535
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 3 cut(s) 180, 321, 363
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 349, 444, 492, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
Bse1I ACTGG 2 cut(s) 163, 328
BseBI CCWGG 3 cut(s) 351, 461, 535
BseDI CCNNGG 4 cut(s) 349, 444, 492, 533
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
BseMII CTCAG 3 cut(s) 82, 183, 466
BseNI ACTGG 2 cut(s) 163, 328
BseRI GAGGAG 2 cut(s) 44, 90
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 5 cut(s) 44, 56, 75, 387, 450
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 4 cut(s) 383, 401, 424, 498
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 5 cut(s) 44, 56, 75, 387, 450
Bsp1286I GDGCHC 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 5 cut(s) 44, 56, 75, 387, 450
BspCNI CTCAG 3 cut(s) 81, 184, 465
BspLI GGNNCC 5 cut(s) 136, 175, 246, 531, 532
BsrI ACTGG 2 cut(s) 163, 328
BssECI CCNNGG 4 cut(s) 349, 444, 492, 533
BssT1I CCWWGG 2 cut(s) 444, 492
Bst2UI CCWGG 3 cut(s) 351, 461, 535
Bst4CI ACNGT 2 cut(s) 22, 206
Bst6I CTCTTC 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 576
BstC8I GCNNGC 5 cut(s) 189, 198, 297, 369, 403
BstDEI CTNAG 4 cut(s) 68, 153, 192, 452
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 2 cut(s) 381, 496
BstF5I GGATG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 4 cut(s) 193, 197, 206, 244
BstNI CCWGG 3 cut(s) 351, 461, 535
BstSCI CCNGG 3 cut(s) 349, 459, 533
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 5 cut(s) 44, 56, 75, 387, 450
BtgI CCRYGG 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 5 cut(s) 189, 198, 297, 369, 403
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 164, 329, 448, 530
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 106, 120, 178, 445
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 68, 153, 192, 452
DriI GACNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 349
Eam1105I GACNNNNNGTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 444, 492
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 3 cut(s) 164, 329, 530
Eco72I CACGTG 1 cut(s) 576
EcoNI CCTNNNNNAGG 2 cut(s) 381, 496
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 349, 459, 533
EcoT14I CCWWGG 2 cut(s) 444, 492
ErhI CCWWGG 2 cut(s) 444, 492
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 123, 181, 448
FaiI YATR 6 cut(s) 107, 121, 141, 179, 446, 568
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 105, 119, 177, 444
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 185
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 3 cut(s) 180, 321, 363
HaeIII GGCC 5 cut(s) 44, 56, 75, 387, 450
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 109, 123, 181, 448
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 71, 173, 415
Hpy188III TCNNGA 4 cut(s) 221, 380, 395, 519
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 34, 377, 492
HpyCH4III ACNGT 2 cut(s) 22, 206
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 197, 206, 244
HpyF3I CTNAG 4 cut(s) 68, 153, 192, 452
HpySE526I ACGT 1 cut(s) 575
Hsp92II CATG 4 cut(s) 109, 123, 181, 448
HspAI GCGC 1 cut(s) 96
KflI GGGWCCC 1 cut(s) 530
LmnI GCTCC 4 cut(s) 103, 114, 244, 256
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 2 cut(s) 319, 485
MboII GAAGA 3 cut(s) 100, 366, 383
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 532
MspA1I CMGCKG 2 cut(s) 191, 295
MspR9I CCNGG 3 cut(s) 351, 461, 535
MvaI CCWGG 3 cut(s) 351, 461, 535
MwoI GCNNNNNNNGC 4 cut(s) 193, 197, 206, 244
NcoI CCATGG 1 cut(s) 444
NlaIII CATG 4 cut(s) 109, 123, 181, 448
NlaIV GGNNCC 5 cut(s) 136, 175, 246, 531, 532
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 576
PmlI CACGTG 1 cut(s) 576
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 349, 459, 533
PspCI CACGTG 1 cut(s) 576
PspGI CCWGG 3 cut(s) 349, 459, 533
PspN4I GGNNCC 5 cut(s) 136, 175, 246, 531, 532
PspPI GGNCC 4 cut(s) 164, 329, 448, 530
PspPPI RGGWCCY 1 cut(s) 530
PvuII CAGCTG 2 cut(s) 191, 295
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 4 cut(s) 164, 329, 448, 530
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 351, 461, 535
SduI GDGCHC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 3 cut(s) 164, 329, 530
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 75
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 349, 459, 533
StyI CCWWGG 2 cut(s) 444, 492
TaaI ACNGT 2 cut(s) 22, 206
TaiI ACGT 1 cut(s) 578
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 33
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 101
VpaK11BI GGWCC 3 cut(s) 164, 329, 530
XagI CCTNNNNNAGG 2 cut(s) 381, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.