Rroxscaffold_1G00009150

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002887
Physical Location & Seq
Forward (+)
11563411 .. 11567555
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009150.1

Sequence Viewer

Length: 501 bp
ATGATACAAGCGGTGATGGTGATAAAATACTCAGGGCAAGCCTCGCCTTGCCAAGTTTTACGAATTTCAGTGGAGGTTCTTTCACTCTCTGCTGGAACCTATGATGTGAAAACTAAGACTGGAGGTCCATTCAGAACCATGAAGCAGTCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGTTGGCTGGAGTTGTTGCTGTCGAGGTCACTGGTGGACCTAATGTTCCATTCCATCTAGGAAGAGAGTTAGCGTTTAGGAAATTGAATAAAGGCCTTAGTTTTATTTTTGTTGCTGCAGTTTTGAGCAGTAGAGCTGAGAAATCCAGCAATTTTCTGGATGCGGAGTATATTTTTGGATACTCAGCTTGTGTACAAGTATTTAAGGTAAGGTATCAGTGTATACAGAAGGATAAGCGGCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

166

Amino Acids

18.24

Weight (kDa)

9.3

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 107 2.5e-12 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 475
AciI CCGC 3 cut(s) 11, 416, 490
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 447
AgsI TTSAA 1 cut(s) 340
AhdI GACNNNNNGTC 1 cut(s) 123
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 4 cut(s) 152, 157, 389, 440
AluI AGCT 4 cut(s) 152, 157, 389, 440
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 125, 290
AsuHPI GGTGA 2 cut(s) 25, 31
AvaII GGWCC 2 cut(s) 125, 290
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 10, 315
BciVI GTATCC 1 cut(s) 425
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 2 cut(s) 369, 491
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 2 cut(s) 370, 492
Bme18I GGWCC 2 cut(s) 125, 290
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 125, 290
BmiI GGNNCC 2 cut(s) 97, 207
BmsI GCATC 1 cut(s) 403
BpmI CTGGAG 2 cut(s) 141, 282
Bpu1102I GCTNAGC 1 cut(s) 153
Bse1I ACTGG 3 cut(s) 124, 253, 289
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 4 cut(s) 45, 144, 381, 450
BseNI ACTGG 3 cut(s) 124, 253, 289
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 348
BsnI GGCC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 445
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 3 cut(s) 11, 416, 490
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 4 cut(s) 44, 145, 382, 449
BspLI GGNNCC 2 cut(s) 97, 207
BspMAI CTGCAG 1 cut(s) 373
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 3 cut(s) 124, 253, 289
BssNAI GTATAC 1 cut(s) 476
Bst1107I GTATAC 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 39, 159
BstDEI CTNAG 6 cut(s) 31, 114, 153, 350, 390, 436
BstF5I GGATG 1 cut(s) 418
BstMWI GCNNNNNNNGC 4 cut(s) 43, 158, 167, 205
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 476
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 3 cut(s) 75, 282, 476
Cac8I GCNNGC 2 cut(s) 39, 159
Cfr13I GGNCC 2 cut(s) 125, 290
Csp6I GTAC 1 cut(s) 446
CviAII CATG 2 cut(s) 139, 494
CviJI RGCY 9 cut(s) 41, 152, 157, 199, 208, 260, 348, 389, 440
CviKI_1 RGCY 9 cut(s) 41, 152, 157, 199, 208, 260, 348, 389, 440
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 6 cut(s) 31, 114, 153, 350, 390, 436
DriI GACNNNNNGTC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 310
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 125, 290
FaeI CATG 2 cut(s) 142, 497
FaiI YATR 5 cut(s) 102, 140, 423, 476, 495
FatI CATG 2 cut(s) 138, 493
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 369, 491
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 369, 491
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 369, 491
GsuI CTGGAG 2 cut(s) 141, 282
HaeIII GGCC 1 cut(s) 348
Hin1II CATG 2 cut(s) 142, 497
HphI GGTGA 2 cut(s) 25, 31
Hpy166II GTNNAC 3 cut(s) 290, 446, 476
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 2 cut(s) 182, 410
Hpy8I GTNNAC 3 cut(s) 290, 446, 476
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 158, 167, 205
HpyF3I CTNAG 6 cut(s) 31, 114, 153, 350, 390, 436
Hsp92II CATG 2 cut(s) 142, 497
LmnI GCTCC 2 cut(s) 205, 217
LpnPI CCDG 9 cut(s) 18, 78, 105, 181, 246, 266, 270, 395, 412
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 280
MboII GAAGA 1 cut(s) 327
MluCI AATT 3 cut(s) 63, 335, 403
MnlI CCTC 4 cut(s) 52, 67, 116, 271
MseI TTAA 2 cut(s) 456, 499
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 43, 158, 167, 205
NlaIII CATG 2 cut(s) 142, 497
NlaIV GGNNCC 2 cut(s) 97, 207
NmuCI GTSAC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 348
PkrI GCNGC 2 cut(s) 370, 492
PspN4I GGNNCC 2 cut(s) 97, 207
PspPI GGNCC 2 cut(s) 125, 290
PstI CTGCAG 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 456, 499
SatI GCNGC 2 cut(s) 369, 491
Sau96I GGNCC 2 cut(s) 125, 290
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 2 cut(s) 125, 290
Sse9I AATT 3 cut(s) 63, 335, 403
SseBI AGGCCT 1 cut(s) 348
SsiI CCGC 3 cut(s) 11, 416, 490
SspMI CTAG 1 cut(s) 311
StuI AGGCCT 1 cut(s) 348
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 63, 335, 403
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 493
Tru1I TTAA 2 cut(s) 456, 499
Tru9I TTAA 2 cut(s) 456, 499
TscAI CASTG 3 cut(s) 75, 289, 476
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 3 cut(s) 75, 289, 476
VpaK11BI GGWCC 2 cut(s) 125, 290
XapI RAATTY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.