Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002887

Physical Location & Seq

Genomic Coordinates Reverse (-)

50534277 .. 50538472

Gene Structure 4196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAAGCAGTCAGCTGAGCTTGCTCACGGTGCTAACAATGGTCTTGATATTGCTGTCAGGCTCTTGGAGCCAATCAAGGAGCAGTTCCCTATTCTCTCTTACGCTGACTTCTACCAGTTGGCTGGAGTTGTTGCTGTCGAGGTCACTGGTGGACCTAATGTTCCATTCCATCTAGGAAGAGAGGATACTCAGCTTGTGTACAAGTATTTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

71

Amino Acids

7.87

Weight (kDa)

5.5

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	4 - 64	2.9e-14	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890 AT1G07890
fragaria_vesca	FvH4_3g33910
malus_domestica	MD03G1108200.v1.1 MD11G1121400.v1.1
prunus_persica	Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1 Prupe.6G091600_v2.0.a1
pyrus_communis	pycom03g08820 pycom11g10330
rosa_chinensis	RchiOBHm_Chr5g0061461
rosa_laevigata	RLG00000035480
rosa_multiflora	Rmu_sc0001527.1_g000034 Rmu_sc0003467.1_g000017 Rmu_sc0005050.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009150 Rroxscaffold_1G00019220 Rroxscaffold_3G00255660 Rroxscaffold_5G00336730 Rroxscaffold_5G00368820
rosa_rugosa	Rorug05G0340500
rosa_samantha	Rh1AG201500 Rh1CG186400 Rh3CG141800 Rh4DG107700 Rh4DG192700 Rh5AG402900 Rh5BG415300 Rh5BG484500 Rh5CG440000 Rh5DG429900
rosa_wichuraiana	Rw5G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	200
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	3 cut(s)	14, 19, 193
AluI	AGCT	3 cut(s)	14, 19, 193
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	169, 201
BccI	CCATC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	178
BlpI	GCTNAGC	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	115, 151
BseMII	CTCAG	2 cut(s)	6, 203
BseNI	ACTGG	2 cut(s)	115, 151
Bsp1407I	TGTACA	1 cut(s)	198
Bsp1720I	GCTNAGC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	7, 202
BspLI	GGNNCC	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	115, 151
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	15, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 29, 67
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	6 cut(s)	14, 19, 61, 70, 122, 193
CviKI_1	RGCY	6 cut(s)	14, 19, 61, 70, 122, 193
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	15, 189
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	152, 199
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	152, 199
HpyCH4III	ACNGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 29, 67
HpyF3I	CTNAG	2 cut(s)	15, 189
LmnI	GCTCC	2 cut(s)	67, 79
LpnPI	CCDG	4 cut(s)	43, 108, 128, 132
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	189
MnlI	CCTC	2 cut(s)	133, 175
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	20, 29, 67
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	152
SetI	ASST	6 cut(s)	16, 21, 144, 157, 195, 215
SinI	GGWCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	138
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	152
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.