Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

2638037 .. 2640663

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTCAAAACGGGAAGATAATCCCAAATCTGGACCAAAACAGTACGAGGCTCCTCAATCTCACAGTTCTCCAGCGGATCGATCCATACATCGAGGAAATCCTCATCACAGCCGCTCATGTCACTTTCTATGAATTCAACATTGAGCTCAGCCAATGGAGTCGTAAGGACGTTGAAGGATCTTTGTTTGTTGTCAAAAGAAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGATAATCTGGTGGAGAATCTCCTGGGAGATTTTGAGTATGAAGTACAAGGTCCATATTTACTTTACCGTAATGCATCTCAAGAAGTAAATGGCATTTGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAGAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTCAAAGAGTGAGTTTGAGGAATTGGAAGCTAAGCCTACAATGGCAGTTATGGATGGTCCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTTGTCAACTTCTTTAGCTCAACGATGAATCTTGGGAACACTGCGAGTGGGTCAGCAAGTGGACCTTACCAATCATCAGCGATTCCTCACCAACCTCACCAGCCTCACCAACCCACCATTGCTCCTCCTGTAGCGGCAGCAGCACCTCCACAGATACAATCACCACCGCCTCTACAATCCTCCTCTCCTCTGATGACTCTCTTTGACAACAACCCTGAAGTTATCAGCAGCAACTCCAACATTCACACAGATTTGGTGACGCCGTCTTTCTTTGGCCCCCCACGAATGATGGCACAGCCACACCTCATTCCTGGTGTATCTATGCCCACTGCTCCTCCTCTCAATCCTAATAATGCGAGTCACCAGCAGCGGTCATATGGTACTCCGGTGCTCCAGCCTTTCCCACCCCCAACTCCACCACCATCACTCGCTCCTGCACCCACTGGTCCGGTTATCAGCAGAGACAAAGTGAAGGAAGCCCTTTTATCCCTGTTGCAGGAGGATGAATTCATTGACAAGATTACCCGAACTTTACAAAATGCACTTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0030234 GO:0031086 GO:0031087 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050790 GO:0050896 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098772 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

367

Amino Acids

40.61

Weight (kDa)

5.43

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP1	PF06058	18 - 131	1.5e-46	Dcp1-like decapping family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	5 cut(s)	76, 114, 683, 716, 919
AclWI	GGATC	4 cut(s)	77, 86, 187, 536
AcsI	RAATTY	2 cut(s)	134, 1055
AcuI	CTGAAG	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	4 cut(s)	46, 205, 294, 931
AfiI	CCNNNNNNNGG	2 cut(s)	31, 1045
AgsI	TTSAA	6 cut(s)	139, 176, 391, 447, 509, 1097
AjnI	CCWGG	2 cut(s)	270, 859
AluBI	AGCT	3 cut(s)	148, 473, 567
AluI	AGCT	3 cut(s)	148, 473, 567
Alw21I	GWGCWC	2 cut(s)	150, 942
Alw26I	GTCTC	2 cut(s)	9, 1005
AlwI	GGATC	4 cut(s)	77, 86, 187, 536
AoxI	GGCC	2 cut(s)	435, 823
ApeKI	GCWGC	4 cut(s)	686, 689, 777, 916
ApoI	RAATTY	2 cut(s)	134, 1055
AspS9I	GGNCC	6 cut(s)	34, 299, 500, 611, 824, 995
AsuHPI	GGTGA	6 cut(s)	629, 638, 647, 702, 817, 902
AvaII	GGWCC	5 cut(s)	34, 299, 500, 611, 995
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	150, 942
BbvI	GCAGC	4 cut(s)	698, 701, 789, 928
BccI	CCATC	4 cut(s)	491, 520, 832, 979
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	2 cut(s)	272, 861
BcoDI	GTCTC	2 cut(s)	9, 1005
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	6 cut(s)	114, 684, 687, 690, 778, 917
BlpI	GCTNAGC	2 cut(s)	149, 474
BlsI	GCNGC	6 cut(s)	115, 685, 688, 691, 779, 918
Bme1390I	CCNGG	2 cut(s)	272, 861
Bme18I	GGWCC	5 cut(s)	34, 299, 500, 611, 995
BmgT120I	GGNCC	6 cut(s)	34, 299, 500, 611, 824, 995
BmiI	GGNNCC	2 cut(s)	53, 826
BmrFI	CCNGG	2 cut(s)	272, 861
BmsI	GCATC	2 cut(s)	332, 520
BpmI	CTGGAG	2 cut(s)	56, 926
Bpu1102I	GCTNAGC	2 cut(s)	149, 474
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	271, 414
BsaWI	WCCGGW	2 cut(s)	934, 997
BsaXI	ACNNNNNCTCC	4 cut(s)	655, 685, 868, 898
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 1045
Bse1I	ACTGG	1 cut(s)	997
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	272, 861
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	271, 414
BseGI	GGATG	3 cut(s)	502, 535, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	31, 1045
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	163, 415
BseNI	ACTGG	1 cut(s)	997
BseRI	GAGGAG	7 cut(s)	44, 386, 663, 721, 726, 873, 876
BseXI	GCAGC	4 cut(s)	698, 701, 789, 928
BsgI	GTGCAG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	437, 825
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	150, 942
BsiSI	CCGG	2 cut(s)	935, 998
BslI	CCNNNNNNNGG	2 cut(s)	31, 1045
BsmAI	GTCTC	2 cut(s)	9, 1005
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	437, 825
Bsp1286I	GDGCHC	2 cut(s)	150, 942
Bsp143I	GATC	4 cut(s)	78, 82, 179, 541
Bsp1720I	GCTNAGC	2 cut(s)	149, 474
BspACI	CCGC	5 cut(s)	76, 114, 683, 716, 919
BspANI	GGCC	2 cut(s)	437, 825
BspCNI	CTCAG	2 cut(s)	162, 414
BspDI	ATCGAT	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	53, 826
BspPI	GGATC	4 cut(s)	77, 86, 187, 536
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	997
BssECI	CCNNGG	2 cut(s)	271, 414
BssMI	GATC	4 cut(s)	78, 82, 179, 541
BssNI	GRCGYC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	272, 861
Bst4CI	ACNGT	3 cut(s)	44, 67, 317
BstACI	GRCGYC	1 cut(s)	809
BstDEI	CTNAG	3 cut(s)	149, 401, 474
BstENI	CCTNNNNNAGG	1 cut(s)	1043
BstF5I	GGATG	3 cut(s)	502, 535, 1057
BstKTI	GATC	4 cut(s)	81, 85, 182, 544
BstMAI	GTCTC	2 cut(s)	9, 1005
BstMBI	GATC	4 cut(s)	78, 82, 179, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 689
BstNI	CCWGG	2 cut(s)	272, 861
BstSCI	CCNGG	2 cut(s)	270, 859
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	4 cut(s)	698, 701, 789, 928
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	437, 825
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	502, 535, 1057
BtsI	GCAGTG	2 cut(s)	588, 876
BtsIMutI	CAGTG	4 cut(s)	409, 588, 876, 990
Cfr13I	GGNCC	6 cut(s)	34, 299, 500, 611, 824, 995
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	4 cut(s)	45, 204, 293, 930
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	4 cut(s)	45, 204, 293, 930
DdeI	CTNAG	3 cut(s)	149, 401, 474
DpnI	GATC	4 cut(s)	80, 84, 181, 543
DpnII	GATC	4 cut(s)	78, 82, 179, 541
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	5 cut(s)	34, 299, 500, 611, 995
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	1043
EcoRI	GAATTC	2 cut(s)	134, 1055
EcoRII	CCWGG	2 cut(s)	270, 859
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FatI	CATG	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	925
Fnu4HI	GCNGC	6 cut(s)	114, 684, 687, 690, 778, 917
FokI	GGATG	3 cut(s)	509, 542, 1064
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	6 cut(s)	114, 684, 687, 690, 778, 917
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	6 cut(s)	114, 684, 687, 690, 778, 917
GsuI	CTGGAG	2 cut(s)	56, 926
HaeIII	GGCC	2 cut(s)	437, 825
HapII	CCGG	2 cut(s)	935, 998
HgaI	GACGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	421, 556
HindII	GTYRAC	2 cut(s)	421, 556
HinfI	GANTC	7 cut(s)	160, 235, 265, 577, 631, 745, 907
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	935, 998
HphI	GGTGA	6 cut(s)	629, 638, 647, 702, 817, 902
Hpy166II	GTNNAC	4 cut(s)	206, 421, 556, 611
Hpy188I	TCNGA	1 cut(s)	741
Hpy188III	TCNNGA	3 cut(s)	32, 329, 506
Hpy8I	GTNNAC	4 cut(s)	206, 421, 556, 611
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	170, 1015
HpyCH4III	ACNGT	3 cut(s)	44, 67, 317
HpyCH4IV	ACGT	2 cut(s)	171, 361
HpyCH4V	TGCA	5 cut(s)	323, 407, 986, 1045, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 689
HpyF3I	CTNAG	3 cut(s)	149, 401, 474
HpySE526I	ACGT	2 cut(s)	171, 361
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	78, 82, 179, 541
LmnI	GCTCC	5 cut(s)	57, 676, 886, 945, 985
Lsp1109I	GCAGC	4 cut(s)	698, 701, 789, 928
LweI	GCATC	2 cut(s)	332, 520
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	2 cut(s)	171, 361
MaeIII	GTNAC	3 cut(s)	121, 805, 908
MalI	GATC	4 cut(s)	80, 84, 181, 543
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	4 cut(s)	78, 82, 179, 541
MboII	GAAGA	2 cut(s)	28, 435
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	150, 942
MluCI	AATT	3 cut(s)	134, 464, 1055
MlyI	GAGTC	3 cut(s)	169, 739, 916
MmeI	TCCRAC	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	76, 919
MspI	CCGG	2 cut(s)	935, 998
MspR9I	CCNGG	2 cut(s)	272, 861
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	272, 861
MwoI	GCNNNNNNNGC	2 cut(s)	530, 689
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	4 cut(s)	78, 82, 179, 541
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	53, 826
NmuCI	GTSAC	3 cut(s)	121, 805, 908
NsiI	ATGCAT	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	4 cut(s)	235, 265, 577, 631
PflFI	GACNNNGTC	1 cut(s)	811
PkrI	GCNGC	6 cut(s)	115, 685, 688, 691, 779, 918
PleI	GAGTC	3 cut(s)	168, 739, 915
PpsI	GAGTC	3 cut(s)	168, 739, 915
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	270, 859
PspGI	CCWGG	2 cut(s)	270, 859
PspN4I	GGNNCC	2 cut(s)	53, 826
PspPI	GGNCC	6 cut(s)	34, 299, 500, 611, 824, 995
PsuI	RGATCY	1 cut(s)	179
PsyI	GACNNNGTC	1 cut(s)	811
RsaI	GTAC	4 cut(s)	46, 205, 294, 931
RsaNI	GTAC	4 cut(s)	45, 204, 293, 930
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	6 cut(s)	114, 684, 687, 690, 778, 917
Sau3AI	GATC	4 cut(s)	78, 82, 179, 541
Sau96I	GGNCC	6 cut(s)	34, 299, 500, 611, 824, 995
SchI	GAGTC	3 cut(s)	169, 739, 916
ScrFI	CCNGG	2 cut(s)	272, 861
SduI	GDGCHC	2 cut(s)	150, 942
SfaNI	GCATC	2 cut(s)	332, 520
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	5 cut(s)	34, 299, 500, 611, 995
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	134, 464, 1055
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	5 cut(s)	76, 114, 683, 716, 919
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	270, 859
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	44, 67, 317
TaiI	ACGT	2 cut(s)	174, 364
TaqI	TCGA	3 cut(s)	81, 93, 214
TasI	AATT	3 cut(s)	134, 464, 1055
TatI	WGTACW	2 cut(s)	203, 292
TauI	GCSGC	2 cut(s)	116, 686
TfiI	GAWTC	4 cut(s)	235, 265, 577, 631
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	4 cut(s)	409, 595, 883, 997
TseFI	GTSAC	3 cut(s)	121, 805, 908
TseI	GCWGC	4 cut(s)	686, 689, 777, 916
Tsp45I	GTSAC	3 cut(s)	121, 805, 908
TspDTI	ATGAA	6 cut(s)	147, 248, 303, 590, 1048, 1068
TspRI	CASTG	4 cut(s)	409, 595, 883, 997
Tth111I	GACNNNGTC	1 cut(s)	811
VpaK11BI	GGWCC	5 cut(s)	34, 299, 500, 611, 995
XagI	CCTNNNNNAGG	1 cut(s)	1043
XapI	RAATTY	2 cut(s)	134, 1055
XspI	CTAG	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.