MD11G1168500.v1.1

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002391
Physical Location & Seq
Forward (+)
18039674 .. 18044528
4855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1168500.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGTCGCAGAACGGGAAATTGACGCCGAATCTGGACCAGCAGAGCACGAAGCTTCTGAATCTGACGGTTCTGCAGCGAATCGACCCCTTCGTCGAGGAAATTCTCATCACCTCCACTCACGTCACCTTCTACGAGTTCAACACTGACCTCAGCGAATGGAGTCGCAAGGACGTTGAAGGATCGCTCTTCGTGGTCAAGAGGAATGCGCAACCTCGGTTTCAGTTCATTGTGATGAACCGGCGGAATACTGAAAATTTGGTGGAGGATCTCTTGGGAGATTTTGAATTTGAAGTCCAACATCCATATCTATTGTATCGAAATGCGGCTCGAGAGGTCAATGGCATTTGGTTTTACAATCCAAGTGAATGTGAGGAGGTGGCAAATCTTTTTAGCAGGATTCTTAGTGCATATTCCAAGGTGCCTCAAAAGTCAATGGCATCACCAACAAAGAGTGAGTTTGAGGAACTGGAAGCAGTTCCAAGCATGGTTGTTATGGATGGTCCTTTGGAGCCATCATCATCAACTGCCTCTCATGTCACTGACGTTCCAGATGATCCAGCTTTTGTGAACTTCTTCAGTACGGCTATGACTATCGTGACTTCTTCAACTACAGCAATTACCGGACAGCCTTACCAGTCATCTTCGACAGTCTCTCTACCTTCTCATCCAGTCGGTGTTGCCCCTTCAAGTATTCCTGGCATGCAAATACCGTCTGCTCCACTGTTACTGTCTACAACTTTGTCCTCTTACCTTGACCTCCCTGAATCCCATAACATCACCAACTTGGCCAGTAATCTTGTAAAGCCATCTTCTTTTTTTGGTCATCCTTCCTCTTCAGTAACAACCATGCCACCTGTCTCTGCATCAATCCCTGCTGCTCCTCTTCTTCACCCTGCTGTAACTGTGCAACGTCCATATGGTGCTCCTCTTTTACAACCTTTTCCACCGCCAGCTCCTCCACCATCTCTCACTCCTGCTTCTTTCCCTACTCCGAACTATGGGCCAGTTAACAGAGATAAAGTACGAAATGCTCTCATGCTGTTTGTACAGGATAATCAATTCATTGACATGGTATACGGAGCACTCCAGAAAGCACCCCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

369

Amino Acids

40.37

Weight (kDa)

5.17

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 17 - 131 7.1e-46 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 2 cut(s) 731, 1074
AciI CCGC 3 cut(s) 241, 323, 947
AclWI GGATC 3 cut(s) 187, 273, 548
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 3 cut(s) 99, 253, 284
AcuI CTGAAG 2 cut(s) 559, 819
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 3 cut(s) 580, 1023, 1047
AfiI CCNNNNNNNGG 1 cut(s) 998
AgsI TTSAA 6 cut(s) 139, 176, 284, 290, 606, 687
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 3 cut(s) 52, 560, 953
AluI AGCT 3 cut(s) 52, 560, 953
Alw21I GWGCWC 3 cut(s) 47, 925, 1084
Alw26I GTCTC 2 cut(s) 655, 862
AlwI GGATC 3 cut(s) 187, 273, 548
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 786, 1001
ApeKI GCWGC 2 cut(s) 73, 875
ApoI RAATTY 3 cut(s) 99, 253, 284
Asp700I GAANNNNTTC 2 cut(s) 474, 572
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 34, 500, 1001
AsuHPI GGTGA 5 cut(s) 100, 115, 432, 769, 881
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 34, 500
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 1 cut(s) 418
Bbv12I GWGCWC 3 cut(s) 47, 925, 1084
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 85, 862
BccI CCATC 4 cut(s) 491, 520, 814, 970
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 655, 862
BfmI CTRYAG 2 cut(s) 71, 609
BisI GCNGC 3 cut(s) 74, 324, 876
BlsI GCNGC 3 cut(s) 75, 325, 877
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 2 cut(s) 34, 500
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 34, 500, 1001
BmiI GGNNCC 2 cut(s) 420, 510
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 446, 872
BpmI CTGGAG 1 cut(s) 1070
Bpu10I CCTNAGC 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 212, 414
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 5 cut(s) 471, 634, 668, 789, 1004
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 212, 414
BseGI GGATG 4 cut(s) 298, 502, 664, 823
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 5 cut(s) 471, 634, 668, 789, 1004
BseRI GAGGAG 4 cut(s) 386, 870, 915, 945
BseXI GCAGC 2 cut(s) 85, 862
BshFI GGCC 2 cut(s) 788, 1003
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 3 cut(s) 47, 925, 1084
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 2 cut(s) 238, 621
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 2 cut(s) 655, 862
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 788, 1003
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 47, 925, 1084
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 3 cut(s) 179, 265, 553
BspACI CCGC 3 cut(s) 241, 323, 947
BspANI GGCC 2 cut(s) 788, 1003
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 420, 510
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 187, 273, 548
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 1045
BsrI ACTGG 5 cut(s) 471, 634, 668, 789, 1004
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 212, 414
BssMI GATC 3 cut(s) 179, 265, 553
BssNAI GTATAC 1 cut(s) 1075
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 414
Bst1107I GTATAC 1 cut(s) 1075
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 6 cut(s) 67, 649, 711, 723, 729, 904
Bst6I CTCTTC 3 cut(s) 191, 838, 888
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 701, 951
BstDEI CTNAG 2 cut(s) 149, 401
BstF5I GGATG 4 cut(s) 298, 502, 664, 823
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 182, 268, 556
BstMAI GTCTC 2 cut(s) 655, 862
BstMBI GATC 3 cut(s) 179, 265, 553
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 2 cut(s) 71, 609
BstV1I GCAGC 2 cut(s) 85, 862
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 1075
BsuRI GGCC 2 cut(s) 788, 1003
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 4 cut(s) 298, 502, 664, 823
BtsIMutI CAGTG 3 cut(s) 141, 537, 719
Cac8I GCNNGC 2 cut(s) 701, 951
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 3 cut(s) 34, 500, 1001
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 579, 1022, 1046
CviAII CATG 6 cut(s) 484, 533, 700, 847, 1036, 1069
CviQI GTAC 3 cut(s) 579, 1022, 1046
DdeI CTNAG 2 cut(s) 149, 401
DpnI GATC 3 cut(s) 181, 267, 555
DpnII GATC 3 cut(s) 179, 265, 553
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 191, 838, 888
EarI CTCTTC 3 cut(s) 191, 838, 888
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 34, 500
Eco57I CTGAAG 2 cut(s) 559, 819
Eco88I CYCGRG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 6 cut(s) 487, 536, 703, 850, 1039, 1072
FatI CATG 6 cut(s) 483, 532, 699, 846, 1035, 1068
FauNDI CATATG 1 cut(s) 916
FblI GTMKAC 2 cut(s) 731, 1074
Fnu4HI GCNGC 3 cut(s) 74, 324, 876
FokI GGATG 4 cut(s) 285, 509, 651, 810
Fsp4HI GCNGC 3 cut(s) 74, 324, 876
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 3 cut(s) 74, 324, 876
GsuI CTGGAG 1 cut(s) 1070
HaeIII GGCC 2 cut(s) 788, 1003
HapII CCGG 2 cut(s) 238, 621
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 6 cut(s) 487, 536, 703, 850, 1039, 1072
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 6 cut(s) 28, 58, 78, 160, 397, 764
HpaI GTTAAC 1 cut(s) 1009
HpaII CCGG 2 cut(s) 238, 621
HphI GGTGA 5 cut(s) 100, 115, 432, 769, 881
Hpy166II GTNNAC 4 cut(s) 568, 732, 1009, 1075
Hpy188I TCNGA 3 cut(s) 57, 63, 993
Hpy188III TCNNGA 6 cut(s) 32, 196, 329, 548, 595, 1087
Hpy8I GTNNAC 4 cut(s) 568, 732, 1009, 1075
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 6 cut(s) 97, 136, 170, 669, 693, 837
HpyCH4III ACNGT 6 cut(s) 67, 649, 711, 723, 729, 904
HpyCH4IV ACGT 4 cut(s) 120, 171, 543, 910
HpyCH4V TGCA 5 cut(s) 73, 407, 703, 863, 907
HpyF3I CTNAG 2 cut(s) 149, 401
HpySE526I ACGT 4 cut(s) 120, 171, 543, 910
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 6 cut(s) 487, 536, 703, 850, 1039, 1072
HspAI GCGC 1 cut(s) 206
KspAI GTTAAC 1 cut(s) 1009
Kzo9I GATC 3 cut(s) 179, 265, 553
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 6 cut(s) 508, 721, 883, 928, 958, 1079
Lsp1109I GCAGC 2 cut(s) 85, 862
LweI GCATC 2 cut(s) 446, 872
MaeII ACGT 4 cut(s) 120, 171, 543, 910
MaeIII GTNAC 6 cut(s) 121, 535, 595, 723, 838, 898
MalI GATC 3 cut(s) 181, 267, 555
MboI GATC 3 cut(s) 179, 265, 553
MboII GAAGA 8 cut(s) 178, 565, 594, 633, 801, 825, 875, 878
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 47, 925, 1084
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 6 cut(s) 17, 99, 253, 284, 615, 1058
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 788
MroXI GAANNNNTTC 2 cut(s) 474, 572
MscI TGGCCA 1 cut(s) 788
MseI TTAA 1 cut(s) 1008
MslI CAYNNNNRTG 2 cut(s) 230, 1067
Msp20I TGGCCA 1 cut(s) 788
MspI CCGG 2 cut(s) 238, 621
MspR9I CCNGG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 916
NdeII GATC 3 cut(s) 179, 265, 553
NlaIII CATG 6 cut(s) 487, 536, 703, 850, 1039, 1072
NlaIV GGNNCC 2 cut(s) 420, 510
NmuCI GTSAC 3 cut(s) 121, 535, 595
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 703
PaeI GCATGC 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 2 cut(s) 474, 572
PfeI GAWTC 5 cut(s) 28, 58, 78, 397, 764
PkrI GCNGC 3 cut(s) 75, 325, 877
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 2 cut(s) 420, 510
PspPI GGNCC 3 cut(s) 34, 500, 1001
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 3 cut(s) 580, 1023, 1047
RsaNI GTAC 3 cut(s) 579, 1022, 1046
RseI CAYNNNNRTG 2 cut(s) 230, 1067
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 1008
SatI GCNGC 3 cut(s) 74, 324, 876
Sau3AI GATC 3 cut(s) 179, 265, 553
Sau96I GGNCC 3 cut(s) 34, 500, 1001
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 3 cut(s) 47, 925, 1084
SfaNI GCATC 2 cut(s) 446, 872
SfcI CTRYAG 2 cut(s) 71, 609
Sfr274I CTCGAG 1 cut(s) 327
SinI GGWCC 2 cut(s) 34, 500
SlaI CTCGAG 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 230, 1067
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SphI GCATGC 1 cut(s) 703
Sse9I AATT 6 cut(s) 17, 99, 253, 284, 615, 1058
SsiI CCGC 3 cut(s) 241, 323, 947
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 6 cut(s) 67, 649, 711, 723, 729, 904
TaiI ACGT 4 cut(s) 123, 174, 546, 913
TaqI TCGA 5 cut(s) 81, 93, 316, 328, 644
TasI AATT 6 cut(s) 17, 99, 253, 284, 615, 1058
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 5 cut(s) 28, 58, 78, 397, 764
Tru1I TTAA 1 cut(s) 1008
Tru9I TTAA 1 cut(s) 1008
TscAI CASTG 3 cut(s) 148, 544, 726
TseFI GTSAC 3 cut(s) 121, 535, 595
TseI GCWGC 2 cut(s) 73, 875
Tsp45I GTSAC 3 cut(s) 121, 535, 595
TspDTI ATGAA 3 cut(s) 214, 248, 1051
TspGWI ACGGA 1 cut(s) 1092
TspRI CASTG 3 cut(s) 148, 544, 726
VpaK11BI GGWCC 2 cut(s) 34, 500
XapI RAATTY 3 cut(s) 99, 253, 284
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 327
XmiI GTMKAC 2 cut(s) 731, 1074
XmnI GAANNNNTTC 2 cut(s) 474, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.