Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

10787434 .. 10792516

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G135600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCACAGAACGGGAAATTAAGGCCAAATCTGGACCAGCAGAGCACAAAGCTTCTCAATCTAACTGTTCTCCAGCGAATCGACCCATTTATCGACGAAATTCTCATCACCGCAACTCATGTCACCTTCTACGAGTTCAACACTGACCTCAGCGAATGGAGTCGCAAGGACGTCGAAGGATCTCTCTTCGTCGTCAAGAGGAATGCTCAACCTCGGTTTCAGTTTATTGTGATGAATCGCCGGAGTACTGAAAATTTGGTGGAGGATCTTTTGGGAGATTTTGAATTCGAAGTTCAGGTTCCATATCTTTTGTATCGAAATGCAGCCCGAGAGGTCAATGGTATTTGGTTCTACAATGCAAGTGAATGTGAAGACGTGGCAAATCTTTTTAGCAGGATACTTGGTGCATATTCCAAGGTGTCATCGACAAAGAGCGAGTTTGAGGAACTGGAAGCAGTCCCAACTATAGCTTTTATGGATGGTCCTTTGGAGCCATCATCATCAACTGCCTGCATTGTCACAGATGTTCCAGATGATCCTGCCTTTGTGAACTTCTTTAGTACGGCTACAACTATCGTGAATTCTTCAACTACAACAATTACTGGACAGCCTTACCAGCCTTCTTCGACAATCTCTCTACCTTCCCATCCAGTCGGAGTTGCCCCTTCCCCTATTCCTAGCATGCAGATATCATCTGCAACTTTAGCCCCTTTCCTTGACATCCCTGAATCCCACAGCAACACCAAACTGGTCAATAATCTTGTAAAGCCATCTTCGTTTTTTGTTCCTCCTTCCTCTTCACCAACATCGATGCCACGTGTCTCTTCATCAGTGCCTACTGCTCCTCATCTTCACCCTGCTGTAAGTCTACAACGTCCATATGGTGCTCCTTTGTTACAACCTTTTCCACCACCAGCTCCTCCACCATCTCTCACTCCTGCTTCTTTTCCTATCCCGAACTGTGGGCCAGTTAACAGAGACAAAGTTCGAAATGCACTCATGCTGCTTGTGCAGGACAATCATTTCATCGACATGGTATATGGAGCACTCCTGAATGCACACCATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

357

Amino Acids

39.11

Weight (kDa)

5.25

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	3 cut(s)	187, 273, 530
AcsI	RAATTY	4 cut(s)	99, 253, 284, 580
AcvI	CACGTG	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	247, 562
AfiI	CCNNNNNNNGG	1 cut(s)	962
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	3 cut(s)	139, 284, 588
AjiI	CACGTC	1 cut(s)	376
AluBI	AGCT	3 cut(s)	52, 470, 917
AluI	AGCT	3 cut(s)	52, 470, 917
Alw21I	GWGCWC	3 cut(s)	47, 889, 1048
Alw26I	GTCTC	2 cut(s)	826, 972
AlwI	GGATC	3 cut(s)	187, 273, 530
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	23, 965
ApeKI	GCWGC	2 cut(s)	323, 1003
ApoI	RAATTY	4 cut(s)	99, 253, 284, 580
AspS9I	GGNCC	3 cut(s)	34, 482, 965
AsuHPI	GGTGA	4 cut(s)	100, 115, 792, 845
AsuII	TTCGAA	2 cut(s)	288, 988
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	2 cut(s)	34, 482
BbrPI	CACGTG	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	3 cut(s)	47, 889, 1048
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	335, 990
BccI	CCATC	5 cut(s)	473, 502, 654, 778, 934
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciVI	GTATCC	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	826, 972
BfaI	CTAG	1 cut(s)	678
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	2 cut(s)	324, 1004
BlsI	GCNGC	2 cut(s)	325, 1005
BmcAI	AGTACT	1 cut(s)	247
Bme18I	GGWCC	2 cut(s)	34, 482
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	3 cut(s)	34, 482, 965
BmiI	GGNNCC	2 cut(s)	300, 492
BmsI	GCATC	1 cut(s)	801
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu14I	TTCGAA	2 cut(s)	288, 988
Bsa29I	ATCGAT	1 cut(s)	809
BsaAI	YACGTR	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	212, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse1I	ACTGG	5 cut(s)	453, 607, 650, 753, 968
BseCI	ATCGAT	1 cut(s)	809
BseDI	CCNNGG	2 cut(s)	212, 414
BseGI	GGATG	3 cut(s)	484, 646, 720
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	5 cut(s)	453, 607, 650, 753, 968
BseRI	GAGGAG	2 cut(s)	834, 909
BseXI	GCAGC	2 cut(s)	335, 990
BsgI	GTGCAG	1 cut(s)	1031
BshFI	GGCC	2 cut(s)	25, 967
BshVI	ATCGAT	1 cut(s)	809
BsiHKAI	GWGCWC	3 cut(s)	47, 889, 1048
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	2 cut(s)	826, 972
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	2 cut(s)	208, 1060
BsnI	GGCC	2 cut(s)	25, 967
BsoBI	CYCGRG	1 cut(s)	327
Bsp119I	TTCGAA	2 cut(s)	288, 988
Bsp1286I	GDGCHC	3 cut(s)	47, 889, 1048
Bsp143I	GATC	3 cut(s)	179, 265, 535
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	2 cut(s)	25, 967
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	300, 492
BspPI	GGATC	3 cut(s)	187, 273, 530
BspT104I	TTCGAA	2 cut(s)	288, 988
BsrI	ACTGG	5 cut(s)	453, 607, 650, 753, 968
BssECI	CCNNGG	2 cut(s)	212, 414
BssMI	GATC	3 cut(s)	179, 265, 535
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	67, 962
Bst6I	CTCTTC	3 cut(s)	191, 802, 829
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	818
BstBI	TTCGAA	2 cut(s)	288, 988
BstC8I	GCNNGC	2 cut(s)	511, 683
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	484, 646, 720
BstKTI	GATC	3 cut(s)	182, 268, 538
BstMAI	GTCTC	2 cut(s)	826, 972
BstMBI	GATC	3 cut(s)	179, 265, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	616, 704, 1009
BstNSI	RCATGY	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	335, 990
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	179, 265
BstYI	RGATCY	2 cut(s)	179, 265
Bsu15I	ATCGAT	1 cut(s)	809
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	25, 967
BsuTUI	ATCGAT	1 cut(s)	809
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	484, 646, 720
BtsIMutI	CAGTG	2 cut(s)	141, 837
Cac8I	GCNNGC	2 cut(s)	511, 683
Cfr13I	GGNCC	3 cut(s)	34, 482, 965
ClaI	ATCGAT	1 cut(s)	809
Csp6I	GTAC	2 cut(s)	246, 561
CviAII	CATG	4 cut(s)	119, 682, 1000, 1033
CviQI	GTAC	2 cut(s)	246, 561
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	181, 267, 537
DpnII	GATC	3 cut(s)	179, 265, 535
Eam1104I	CTCTTC	3 cut(s)	191, 802, 829
EarI	CTCTTC	3 cut(s)	191, 802, 829
Eco130I	CCWWGG	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	34, 482
Eco72I	CACGTG	1 cut(s)	818
Eco88I	CYCGRG	1 cut(s)	327
EcoRI	GAATTC	2 cut(s)	284, 580
EcoRV	GATATC	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	4 cut(s)	122, 685, 1003, 1036
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	4 cut(s)	118, 681, 999, 1032
FauNDI	CATATG	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	324, 1004
FokI	GGATG	3 cut(s)	491, 633, 707
Fsp4HI	GCNGC	2 cut(s)	324, 1004
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	2 cut(s)	324, 1004
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	25, 967
HapII	CCGG	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	122, 685, 1003, 1036
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	78, 160, 235, 728
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	4 cut(s)	100, 115, 792, 845
Hpy166II	GTNNAC	3 cut(s)	550, 869, 973
Hpy188I	TCNGA	1 cut(s)	656
Hpy188III	TCNNGA	6 cut(s)	32, 196, 530, 577, 955, 1051
Hpy8I	GTNNAC	3 cut(s)	550, 869, 973
Hpy99I	CGWCG	3 cut(s)	98, 176, 194
HpyAV	CCTTC	6 cut(s)	136, 170, 630, 651, 675, 801
HpyCH4III	ACNGT	2 cut(s)	67, 962
HpyCH4IV	ACGT	4 cut(s)	171, 375, 817, 874
HpyCH4V	TGCA	9 cut(s)	323, 359, 407, 513, 685, 698, 995, 1012, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	616, 704, 1009
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	4 cut(s)	171, 375, 817, 874
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	122, 685, 1003, 1036
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	179, 265, 535
LmnI	GCTCC	5 cut(s)	490, 847, 892, 922, 1043
Lsp1109I	GCAGC	2 cut(s)	335, 990
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	4 cut(s)	171, 375, 817, 874
MaeIII	GTNAC	3 cut(s)	121, 517, 894
MalI	GATC	3 cut(s)	181, 267, 537
MboI	GATC	3 cut(s)	179, 265, 535
MboII	GAAGA	8 cut(s)	178, 383, 576, 615, 765, 789, 816, 842
MflI	RGATCY	2 cut(s)	179, 265
MhlI	GDGCHC	3 cut(s)	47, 889, 1048
MluCI	AATT	6 cut(s)	17, 99, 253, 284, 580, 597
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	634
MseI	TTAA	2 cut(s)	20, 972
MslI	CAYNNNNRTG	1 cut(s)	1031
MspI	CCGG	1 cut(s)	241
Mva1269I	GAATGC	2 cut(s)	208, 1060
MwoI	GCNNNNNNNGC	3 cut(s)	616, 704, 1009
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	3 cut(s)	179, 265, 535
NlaIII	CATG	4 cut(s)	122, 685, 1003, 1036
NlaIV	GGNNCC	2 cut(s)	300, 492
NmuCI	GTSAC	2 cut(s)	121, 517
NspI	RCATGY	1 cut(s)	685
NspV	TTCGAA	2 cut(s)	288, 988
PaeI	GCATGC	1 cut(s)	685
PctI	GAATGC	2 cut(s)	208, 1060
PfeI	GAWTC	3 cut(s)	78, 235, 728
PkrI	GCNGC	2 cut(s)	325, 1005
PleI	GAGTC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	818
PspCI	CACGTG	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	300, 492
PspPI	GGNCC	3 cut(s)	34, 482, 965
PsuI	RGATCY	2 cut(s)	179, 265
RsaI	GTAC	2 cut(s)	247, 562
RsaNI	GTAC	2 cut(s)	246, 561
RseI	CAYNNNNRTG	1 cut(s)	1031
SaqAI	TTAA	2 cut(s)	20, 972
SatI	GCNGC	2 cut(s)	324, 1004
Sau3AI	GATC	3 cut(s)	179, 265, 535
Sau96I	GGNCC	3 cut(s)	34, 482, 965
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	3 cut(s)	47, 889, 1048
SfaNI	GCATC	1 cut(s)	801
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	2 cut(s)	288, 988
SinI	GGWCC	2 cut(s)	34, 482
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	6 cut(s)	17, 99, 253, 284, 580, 597
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	67, 962
TaiI	ACGT	4 cut(s)	174, 378, 820, 877
TasI	AATT	6 cut(s)	17, 99, 253, 284, 580, 597
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	78, 235, 728
Tru1I	TTAA	2 cut(s)	20, 972
Tru9I	TTAA	2 cut(s)	20, 972
TscAI	CASTG	2 cut(s)	148, 837
TseFI	GTSAC	2 cut(s)	121, 517
TseI	GCWGC	2 cut(s)	323, 1003
Tsp45I	GTSAC	2 cut(s)	121, 517
TspDTI	ATGAA	4 cut(s)	248, 816, 1015, 1056
TspRI	CASTG	2 cut(s)	148, 837
VpaK11BI	GGWCC	2 cut(s)	34, 482
XapI	RAATTY	4 cut(s)	99, 253, 284, 580
XceI	RCATGY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.