Rroxscaffold_1G00035080

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002391
Physical Location & Seq
Forward (+)
51037464 .. 51046038
8575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035080.1

Sequence Viewer

Length: 1089 bp
ATGTCGCAGAACGGGAAGCTAATGCCGAATCTGGACCAGCAGAGCACCAAGGTCCTCAACCTCACGGTTCTCCAGCGAAACGACCCCTTCGTCGAGGAGATCCTCATGACTTCTACTCACGTCACCTTCTACAAGTTCGACACTAACACCAGCCAATGGAGTCGCAAGGACGTCGAGGGATCTCTCTTCGTCGTCAAGAGGAACGCGCAGCCTCGCTTTCAGTTTATTGTCATGAATCGCCTCAATACTGAAAATTTGGTGGAGGATCTTTTGGGAGATTTTGAATGTGAAGTCCAGCTTCCTTATCTTTTATATCGAAATGCGGCCCGAGAGGTGAATGGTATTTGGTTCTACAATGCATCTGAGTGTGAAGAGGTGGCAAATCTTTTCAGCAGGATACTTGGTGCATATTCCAAGGTGCCTCAAAAGTCAACGGTATCAACTACAAAGAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGGATGTTATGGATGGTCCTTTAGAGCCATCATCATCAACTGCCTCGAATATTGCAGATGCTCCTGATGACCATGCCTTTGTTAACTTCTTTAGTGCAGCTTCACATACAGCAGTTGCTGGACAGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTCGGCTTTGCTCCTTCCACTATTTCTAACATGCACATATCATCTCCTCCACAACTATCAACTGCGCCTTCAGTCCCTTTCCTTGACGTCCCTGAATCCCACAGCAATACCAACCTGGCCACTAGTCTTGTAAAGCCTTCTTCATTTTTTGTTACCCCTCCTTCCCCTGCAACAGTGATTGCACCTGTATCTTCATCAGTGCCTAGTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTCCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCCACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCACTTATTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTGCTTGTTCAGGATAATCAGTTCGTTGACATGGTCCATCTAGCACTCCTTAAAGCACACCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

362

Amino Acids

39.62

Weight (kDa)

5.34

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 18 - 131 2.3e-45 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 937
AasI GACNNNNNNGTC 1 cut(s) 89
AatII GACGTC 2 cut(s) 174, 738
Acc36I ACCTGC 2 cut(s) 880, 937
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 883
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 323
AclWI GGATC 3 cut(s) 94, 187, 273
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 2 cut(s) 171, 735
AfiI CCNNNNNNNGG 2 cut(s) 156, 484
AgsI TTSAA 4 cut(s) 284, 470, 869, 972
AhlI ACTAGT 1 cut(s) 770
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 762
AloI GAACNNNNNNTCC 2 cut(s) 1025, 1057
AluBI AGCT 3 cut(s) 19, 298, 584
AluI AGCT 3 cut(s) 19, 298, 584
Alw21I GWGCWC 3 cut(s) 47, 859, 904
AlwI GGATC 3 cut(s) 94, 187, 273
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 3 cut(s) 324, 765, 980
ApeKI GCWGC 3 cut(s) 208, 581, 1021
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AspLEI GCGC 2 cut(s) 208, 715
AspS9I GGNCC 6 cut(s) 34, 52, 325, 500, 980, 1054
AsuHPI GGTGA 2 cut(s) 115, 346
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 4 cut(s) 34, 52, 500, 1054
BaeGI GKGCMC 1 cut(s) 639
BalI TGGCCA 1 cut(s) 767
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 3 cut(s) 47, 859, 904
BbvI GCAGC 3 cut(s) 220, 593, 1008
BccI CCATC 5 cut(s) 487, 491, 520, 949, 1065
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 1 cut(s) 390
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 3 cut(s) 771, 852, 1061
BfmI CTRYAG 1 cut(s) 884
BfuAI ACCTGC 2 cut(s) 880, 937
BfuI GTATCC 1 cut(s) 390
BisI GCNGC 4 cut(s) 209, 324, 582, 1022
BlsI GCNGC 4 cut(s) 210, 325, 583, 1023
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 4 cut(s) 34, 52, 500, 1054
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 6 cut(s) 34, 52, 325, 500, 980, 1054
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 4 cut(s) 368, 532, 652, 1000
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 999, 1031
BpmI CTGGAG 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 171, 735
BsaJI CCNNGG 3 cut(s) 48, 414, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 484
Bse1I ACTGG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 3 cut(s) 48, 414, 483
BseGI GGATG 3 cut(s) 479, 493, 502
BseLI CCNNNNNNNGG 2 cut(s) 156, 484
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 3 cut(s) 110, 684, 849
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 3 cut(s) 220, 593, 1008
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 326, 767, 982
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 3 cut(s) 47, 859, 904
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 3 cut(s) 461, 707, 722
BslI CCNNNNNNNGG 2 cut(s) 156, 484
BsmFI GGGAC 3 cut(s) 461, 707, 722
BsnI GGCC 3 cut(s) 326, 767, 982
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 4 cut(s) 47, 639, 859, 904
Bsp143I GATC 3 cut(s) 99, 179, 265
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 1 cut(s) 323
BspANI GGCC 3 cut(s) 326, 767, 982
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 2 cut(s) 105, 231
BspLI GGNNCC 1 cut(s) 420
BspMI ACCTGC 2 cut(s) 880, 937
BspPI GGATC 3 cut(s) 94, 187, 273
BspT107I GGYRCC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 48, 414, 483
BssMI GATC 3 cut(s) 99, 179, 265
BssNI GRCGYC 2 cut(s) 171, 735
BssT1I CCWWGG 3 cut(s) 48, 414, 483
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 3 cut(s) 67, 436, 823
Bst6I CTCTTC 2 cut(s) 191, 366
BstACI GRCGYC 2 cut(s) 171, 735
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 479, 493, 502
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 2 cut(s) 208, 715
BstKTI GATC 3 cut(s) 102, 182, 268
BstMBI GATC 3 cut(s) 99, 179, 265
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 1 cut(s) 884
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 220, 593, 1008
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 3 cut(s) 99, 179, 265
BstYI RGATCY 3 cut(s) 99, 179, 265
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 326, 767, 982
BtgI CCRYGG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 479, 493, 502
BtsIMutI CAGTG 2 cut(s) 828, 852
BveI ACCTGC 2 cut(s) 880, 937
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 2 cut(s) 105, 231
CfoI GCGC 2 cut(s) 208, 715
Cfr13I GGNCC 6 cut(s) 34, 52, 325, 500, 980, 1054
CseI GACGC 1 cut(s) 878
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 6 cut(s) 106, 232, 484, 557, 679, 1051
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 101, 181, 267
DpnII GATC 3 cut(s) 99, 179, 265
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 2 cut(s) 191, 366
EarI CTCTTC 2 cut(s) 191, 366
Eco130I CCWWGG 3 cut(s) 48, 414, 483
Eco47I GGWCC 4 cut(s) 34, 52, 500, 1054
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 3 cut(s) 48, 414, 483
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 48, 414, 483
FaeI CATG 6 cut(s) 109, 235, 487, 560, 682, 1054
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 3 cut(s) 461, 707, 722
FatI CATG 6 cut(s) 105, 231, 483, 556, 678, 1050
FauNDI CATATG 1 cut(s) 895
FblI GTMKAC 1 cut(s) 883
Fnu4HI GCNGC 4 cut(s) 209, 324, 582, 1022
FokI GGATG 3 cut(s) 466, 500, 509
Fsp4HI GCNGC 4 cut(s) 209, 324, 582, 1022
FspBI CTAG 3 cut(s) 771, 852, 1061
GlaI GCGC 2 cut(s) 207, 714
GluI GCNGC 4 cut(s) 209, 324, 582, 1022
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 326, 767, 982
HapII CCGG 1 cut(s) 1018
HgaI GACGC 1 cut(s) 878
HhaI GCGC 2 cut(s) 208, 715
Hin1I GRCGYC 2 cut(s) 171, 735
Hin1II CATG 6 cut(s) 109, 235, 487, 560, 682, 1054
Hin6I GCGC 2 cut(s) 206, 713
HinP1I GCGC 2 cut(s) 206, 713
HincII GTYRAC 3 cut(s) 432, 568, 1048
HindII GTYRAC 3 cut(s) 432, 568, 1048
HinfI GANTC 5 cut(s) 28, 160, 235, 743, 880
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 2 cut(s) 115, 346
Hpy166II GTNNAC 4 cut(s) 432, 568, 884, 1048
Hpy188I TCNGA 2 cut(s) 364, 1007
Hpy188III TCNNGA 6 cut(s) 32, 106, 196, 232, 548, 1031
Hpy8I GTNNAC 4 cut(s) 432, 568, 884, 1048
Hpy99I CGWCG 3 cut(s) 95, 176, 194
HpyAV CCTTC 6 cut(s) 97, 136, 672, 726, 795, 819
HpyCH4III ACNGT 3 cut(s) 67, 436, 823
HpyCH4IV ACGT 3 cut(s) 120, 171, 735
HpyCH4V TGCA 9 cut(s) 359, 407, 539, 581, 643, 682, 818, 830, 1013
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 3 cut(s) 120, 171, 735
Hsp92I GRCGYC 2 cut(s) 171, 735
Hsp92II CATG 6 cut(s) 109, 235, 487, 560, 682, 1054
HspAI GCGC 2 cut(s) 206, 713
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 3 cut(s) 99, 179, 265
LmnI GCTCC 4 cut(s) 550, 664, 862, 907
Lsp1109I GCAGC 3 cut(s) 220, 593, 1008
LweI GCATC 4 cut(s) 368, 532, 652, 1000
MaeI CTAG 3 cut(s) 771, 852, 1061
MaeII ACGT 3 cut(s) 120, 171, 735
MaeIII GTNAC 2 cut(s) 121, 799
MalI GATC 3 cut(s) 101, 181, 267
MboI GATC 3 cut(s) 99, 179, 265
MboII GAAGA 5 cut(s) 178, 383, 612, 780, 831
MflI RGATCY 3 cut(s) 99, 179, 265
MhlI GDGCHC 4 cut(s) 47, 639, 859, 904
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 2 cut(s) 169, 889
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 361
MscI TGGCCA 1 cut(s) 767
MseI TTAA 2 cut(s) 567, 1071
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 1 cut(s) 767
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 1 cut(s) 764
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 895
NdeII GATC 3 cut(s) 99, 179, 265
NlaIII CATG 6 cut(s) 109, 235, 487, 560, 682, 1054
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 682
PagI TCATGA 2 cut(s) 105, 231
PaqCI CACCTGC 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 3 cut(s) 28, 235, 743
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 4 cut(s) 210, 325, 583, 1023
PleI GAGTC 2 cut(s) 168, 888
PpsI GAGTC 2 cut(s) 168, 888
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 6 cut(s) 34, 52, 325, 500, 980, 1054
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 3 cut(s) 99, 179, 265
PsyI GACNNNGTC 1 cut(s) 1052
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 567, 1071
SatI GCNGC 4 cut(s) 209, 324, 582, 1022
Sau3AI GATC 3 cut(s) 99, 179, 265
Sau96I GGNCC 6 cut(s) 34, 52, 325, 500, 980, 1054
SchI GAGTC 2 cut(s) 169, 889
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 4 cut(s) 47, 639, 859, 904
SfaNI GCATC 4 cut(s) 368, 532, 652, 1000
SfcI CTRYAG 1 cut(s) 884
SinI GGWCC 4 cut(s) 34, 52, 500, 1054
SmiMI CAYNNNNRTG 1 cut(s) 364
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 1 cut(s) 253
SsiI CCGC 1 cut(s) 323
SspI AATATT 1 cut(s) 535
SspMI CTAG 3 cut(s) 771, 852, 1061
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 3 cut(s) 48, 414, 483
TaaI ACNGT 3 cut(s) 67, 436, 823
TaiI ACGT 3 cut(s) 123, 174, 738
TaqI TCGA 5 cut(s) 93, 138, 174, 316, 530
TasI AATT 1 cut(s) 253
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 28, 235, 743
Tru1I TTAA 2 cut(s) 567, 1071
Tru9I TTAA 2 cut(s) 567, 1071
TscAI CASTG 2 cut(s) 828, 852
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 208, 581, 1021
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 248, 780, 831
TspRI CASTG 2 cut(s) 828, 852
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 4 cut(s) 34, 52, 500, 1054
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 883
XspI CTAG 3 cut(s) 771, 852, 1061
ZraI GACGTC 2 cut(s) 172, 736
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.