Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

13909542 .. 13913741

Gene Structure 4200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14120.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTCGCAGAACGGGAAATTGACGCCGAATCTGGACCAGCAGAGCACCAAGCTTCTGAATCTGACGGTTCTGCAGCGAATCGACCCCTTCGTCGAGGAAATTCTCATCACCTCCACTCACGTCACCTTCTACGAGTTCAACACTGACCTCAGCGAATGGAGTCGCAAGGACGTTGAAGGATCGCTCTTCGTGGTCAAGAGGAATGCGCAACCTCGGTTTCAGTTCATTGTGATGAACCGGCGGAATACTGCAAGTAAAATTTGGTGGAGGATCGATCGTTTGGGAGATTTTGAATTTGAAGTCCAACATCCATATCTATTGTATCGAAATGCGGCTCGAGAGGTCAATGGCATTTGGTTCTACAATCCAAGTGAATGTGAGGAGGTGGCAAATCTTTTTAGCAGGATTCTTAGTGCATATTCCAAGGTGCCTCAAAAGTCAATGGTATCACCAACAAAGAGTGAGTTTGAGGAACTGGAAGAAGTCCCAAGCATGGTTGTTATGGATGGTCCTTTGGAGCCATCATCATCAACTGCCTCTCATGTCACAGACGTTCCAGATGACCCAGCTTTTGTGAACTTCTTCAGTACGGCTATGACTATTGTGACTTCTTCAACTACAGCAATTACCGGACAGCCTTACCAGTCATCTTCGACAGTCTCTCTAACTTCTCATCCAGTTGGTGTTGCCCCTTCAAGTATTCCTGGCATGCAAATACCATCTGCTCCACTGTTATCGTCTACAACTTTATCCTCTTACCTTGACCTCCCTGAATCCCGTAACACCACCAACTTGGCCAGTAATCTTGTAAAGCCATCCTCTTTTTTTGTTCATCCTTCCTCTTCAGCAACAACCATGCCACCTGTCTCTGCATCAATCCCTGCTGCTCCTCTTCTTCAACCTGCTGTAAGTGTGCAACGTCCATATGGTGCTCCTCTTTTACAACCTTTTCCACCACCAGCTCCTCCACCGTCTCTCACTCCTGCTTCTTTCCCGACTCCGAACTATGGGCCAGTTAACAGAGATAAAGTACGAAATGCACTCATGCTGCTTGTACAGGATAATCAATTCATTGACATGGTATACGGAGCACTCCAGAAGGCACCCCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

372

Amino Acids

40.89

Weight (kDa)

5.57

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc16I	TGCGCA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	2 cut(s)	427, 1102
AccI	GTMKAC	2 cut(s)	740, 1083
AciI	CCGC	2 cut(s)	241, 332
AclWI	GGATC	2 cut(s)	187, 278
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	3 cut(s)	99, 258, 293
AcuI	CTGAAG	2 cut(s)	568, 828
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	589, 1032, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	493, 1007
AgsI	TTSAA	7 cut(s)	139, 176, 293, 299, 615, 696, 899
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	3 cut(s)	52, 569, 962
AluI	AGCT	3 cut(s)	52, 569, 962
Alw21I	GWGCWC	3 cut(s)	47, 934, 1093
Alw26I	GTCTC	3 cut(s)	664, 871, 978
AlwI	GGATC	2 cut(s)	187, 278
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	795, 1010
ApeKI	GCWGC	3 cut(s)	73, 884, 1048
ApoI	RAATTY	3 cut(s)	99, 258, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	34, 509, 1010
AsuHPI	GGTGA	3 cut(s)	100, 115, 441
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	34, 509
BalI	TGGCCA	1 cut(s)	797
BanI	GGYRCC	2 cut(s)	427, 1102
Bbv12I	GWGCWC	3 cut(s)	47, 934, 1093
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	85, 871, 1035
BccI	CCATC	4 cut(s)	500, 529, 727, 823
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	1 cut(s)	705
BcoDI	GTCTC	3 cut(s)	664, 871, 978
BfmI	CTRYAG	2 cut(s)	71, 618
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	4 cut(s)	74, 333, 885, 1049
BlsI	GCNGC	4 cut(s)	75, 334, 886, 1050
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	34, 509
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	34, 509, 1010
BmiI	GGNNCC	3 cut(s)	429, 519, 1104
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	881
BpmI	CTGGAG	1 cut(s)	1079
Bpu10I	CCTNAGC	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	212, 423
BsaWI	WCCGGW	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 1007
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	5 cut(s)	480, 643, 677, 798, 1013
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	212, 423
BseGI	GGATG	5 cut(s)	307, 511, 673, 815, 832
BseLI	CCNNNNNNNGG	2 cut(s)	493, 1007
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	5 cut(s)	480, 643, 677, 798, 1013
BseRI	GAGGAG	4 cut(s)	395, 879, 924, 954
BseXI	GCAGC	3 cut(s)	85, 871, 1035
BseYI	CCCAGC	1 cut(s)	565
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	797, 1012
BshNI	GGYRCC	2 cut(s)	427, 1102
BshVI	ATCGAT	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	3 cut(s)	47, 934, 1093
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	238, 630
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	493, 1007
BsmAI	GTCTC	3 cut(s)	664, 871, 978
BsmBI	CGTCTC	1 cut(s)	978
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	797, 1012
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	47, 934, 1093
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	3 cut(s)	179, 270, 274
BspACI	CCGC	2 cut(s)	241, 332
BspANI	GGCC	2 cut(s)	797, 1012
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	429, 519, 1104
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	2 cut(s)	187, 278
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	427, 1102
BsrFI	RCCGGY	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	5 cut(s)	480, 643, 677, 798, 1013
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	212, 423
BssMI	GATC	3 cut(s)	179, 270, 274
BssNAI	GTATAC	1 cut(s)	1084
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	423
Bst1107I	GTATAC	1 cut(s)	1084
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	4 cut(s)	67, 658, 732, 972
Bst6I	CTCTTC	3 cut(s)	191, 847, 897
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	1054
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	2 cut(s)	149, 410
BstF5I	GGATG	5 cut(s)	307, 511, 673, 815, 832
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	182, 273, 277
BstMAI	GTCTC	3 cut(s)	664, 871, 978
BstMBI	GATC	3 cut(s)	179, 270, 274
BstMCI	CGRYCG	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	2 cut(s)	71, 618
BstV1I	GCAGC	3 cut(s)	85, 871, 1035
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstZ17I	GTATAC	1 cut(s)	1084
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	797, 1012
BsuTUI	ATCGAT	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	5 cut(s)	307, 511, 673, 815, 832
BtsIMutI	CAGTG	2 cut(s)	141, 728
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	710
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	34, 509, 1010
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	588, 1031, 1055
CviAII	CATG	6 cut(s)	493, 542, 709, 856, 1045, 1078
CviQI	GTAC	3 cut(s)	588, 1031, 1055
DdeI	CTNAG	2 cut(s)	149, 410
DpnI	GATC	3 cut(s)	181, 272, 276
DpnII	GATC	3 cut(s)	179, 270, 274
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	3 cut(s)	191, 847, 897
EarI	CTCTTC	3 cut(s)	191, 847, 897
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	34, 509
Eco57I	CTGAAG	2 cut(s)	568, 828
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	978
FaeI	CATG	6 cut(s)	496, 545, 712, 859, 1048, 1081
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	6 cut(s)	492, 541, 708, 855, 1044, 1077
FauNDI	CATATG	1 cut(s)	925
FblI	GTMKAC	2 cut(s)	740, 1083
Fnu4HI	GCNGC	4 cut(s)	74, 333, 885, 1049
FokI	GGATG	5 cut(s)	294, 518, 660, 802, 819
Fsp4HI	GCNGC	4 cut(s)	74, 333, 885, 1049
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	74, 333, 885, 1049
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	1079
HaeIII	GGCC	2 cut(s)	797, 1012
HapII	CCGG	2 cut(s)	238, 630
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	6 cut(s)	496, 545, 712, 859, 1048, 1081
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	7 cut(s)	28, 58, 78, 160, 406, 773, 997
HpaI	GTTAAC	1 cut(s)	1018
HpaII	CCGG	2 cut(s)	238, 630
HphI	GGTGA	3 cut(s)	100, 115, 441
Hpy166II	GTNNAC	4 cut(s)	577, 741, 1018, 1084
Hpy188I	TCNGA	3 cut(s)	57, 63, 1002
Hpy188III	TCNNGA	6 cut(s)	32, 196, 338, 557, 994, 1096
Hpy8I	GTNNAC	4 cut(s)	577, 741, 1018, 1084
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	6 cut(s)	97, 136, 170, 702, 846, 1093
HpyCH4III	ACNGT	4 cut(s)	67, 658, 732, 972
HpyCH4IV	ACGT	4 cut(s)	120, 171, 552, 919
HpyCH4V	TGCA	7 cut(s)	73, 251, 416, 712, 872, 916, 1040
HpyF3I	CTNAG	2 cut(s)	149, 410
HpySE526I	ACGT	4 cut(s)	120, 171, 552, 919
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	6 cut(s)	496, 545, 712, 859, 1048, 1081
HspAI	GCGC	1 cut(s)	206
KspAI	GTTAAC	1 cut(s)	1018
Kzo9I	GATC	3 cut(s)	179, 270, 274
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	6 cut(s)	517, 730, 892, 937, 967, 1088
Lsp1109I	GCAGC	3 cut(s)	85, 871, 1035
LweI	GCATC	1 cut(s)	881
MaeII	ACGT	4 cut(s)	120, 171, 552, 919
MaeIII	GTNAC	4 cut(s)	121, 544, 604, 779
MalI	GATC	3 cut(s)	181, 272, 276
MboI	GATC	3 cut(s)	179, 270, 274
MboII	GAAGA	8 cut(s)	178, 491, 574, 603, 642, 834, 884, 887
MhlI	GDGCHC	3 cut(s)	47, 934, 1093
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	6 cut(s)	17, 99, 258, 293, 624, 1067
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	2 cut(s)	169, 991
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	1 cut(s)	1017
MslI	CAYNNNNRTG	2 cut(s)	230, 1076
Msp20I	TGGCCA	1 cut(s)	797
MspI	CCGG	2 cut(s)	238, 630
MspR9I	CCNGG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	3 cut(s)	179, 270, 274
NlaIII	CATG	6 cut(s)	496, 545, 712, 859, 1048, 1081
NlaIV	GGNNCC	3 cut(s)	429, 519, 1104
NmuCI	GTSAC	3 cut(s)	121, 544, 604
NsbI	TGCGCA	1 cut(s)	207
NspI	RCATGY	1 cut(s)	712
PaeI	GCATGC	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	5 cut(s)	28, 58, 78, 406, 773
PkrI	GCNGC	4 cut(s)	75, 334, 886, 1050
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	2 cut(s)	168, 991
PpsI	GAGTC	2 cut(s)	168, 991
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	429, 519, 1104
PspPI	GGNCC	3 cut(s)	34, 509, 1010
PstI	CTGCAG	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	3 cut(s)	589, 1032, 1056
RsaNI	GTAC	3 cut(s)	588, 1031, 1055
RseI	CAYNNNNRTG	2 cut(s)	230, 1076
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	1017
SatI	GCNGC	4 cut(s)	74, 333, 885, 1049
Sau3AI	GATC	3 cut(s)	179, 270, 274
Sau96I	GGNCC	3 cut(s)	34, 509, 1010
SchI	GAGTC	2 cut(s)	169, 991
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	3 cut(s)	47, 934, 1093
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	2 cut(s)	71, 618
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	34, 509
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	2 cut(s)	230, 1076
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SphI	GCATGC	1 cut(s)	712
Sse9I	AATT	6 cut(s)	17, 99, 258, 293, 624, 1067
SsiI	CCGC	2 cut(s)	241, 332
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	4 cut(s)	67, 658, 732, 972
TaiI	ACGT	4 cut(s)	123, 174, 555, 922
TaqI	TCGA	6 cut(s)	81, 93, 273, 325, 337, 653
TasI	AATT	6 cut(s)	17, 99, 258, 293, 624, 1067
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	5 cut(s)	28, 58, 78, 406, 773
Tru1I	TTAA	1 cut(s)	1017
Tru9I	TTAA	1 cut(s)	1017
TscAI	CASTG	2 cut(s)	148, 735
TseFI	GTSAC	3 cut(s)	121, 544, 604
TseI	GCWGC	3 cut(s)	73, 884, 1048
Tsp45I	GTSAC	3 cut(s)	121, 544, 604
TspDTI	ATGAA	4 cut(s)	214, 248, 821, 1060
TspGWI	ACGGA	1 cut(s)	1101
TspRI	CASTG	2 cut(s)	148, 735
VpaK11BI	GGWCC	2 cut(s)	34, 509
XapI	RAATTY	3 cut(s)	99, 258, 293
XceI	RCATGY	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	336
XmiI	GTMKAC	2 cut(s)	740, 1083
XmnI	GAANNNNTTC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.