Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

2628191 .. 2632385

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTCAATCTCACGGTGCTGCAGAGAATCGACCCCTTCATCGAAGAGATTCTGATTACGGCCGCCCACGTTACCTTCTATGAATTCAACATCGAGAGCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTTGTTAAAAGGAATACTCAACCGCGGTTCCAGTTCATCGTTATGAATCGGCGCAATACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTATTGTATAGAAATGCTGCCCAAGAAGTTAATGGCATTTGGTTTTATAATGCTCGTGAATGTGAGGAAGTTGCGAATCTCTTTACTAGGATTCTGAATGCATACTCAAAGGCTCCTCCCAAGTCCAAAATATCTTCAACCAAAAGTGAGTTTGAAGAACTTGAAGCAGTCCCATCCATGTTGGTCATGGAAGGGCCGTTGGAGCCATCATTGAATGCCCCTGCTGCCACTGATGCACCTGAAGATTCTTCCTTTATAAACTACCTGGCAGCAATGAATATTGGAAATAATGCTTCAGACGCAACAAATTCAAGACTGCCCTATCAGTCTACTGGAACTGTTCCTGCACCTTCTTATGCACCCAGTGCTGTTTCACCTCCTGCACCAACTCCACAAATACCACCACTTTCCCATTCAGTCCCATCTACGCCAACCCCCCTACATGGCTCCTCTGACCAAACCACCAGCAACAATCGGGTCGCTAATCTTATAAAGCCCTCTTCTTTCTTCCCTCTCCCTGCTTCCTCGCCTCCTTTGGTCGTACCACCTACCTCTTCATCTGTGCCATCTGCTGCTGCACTTCATCCACCCCTGAACCTGCAACGCCCTTATGGCACCCCAATGCTTCAACCCTTTCCACCACCAACGCCCCCACCATCTTTAACACCCAATTCTGTTCCTCCTGCTCCCAGTGACGGGCCTCTTGTTAGCAGAGAAAAAGTGCGAGAAGCACTTGTAATGCTTGTTCAGGACGATCAATTCATCGACATGATATGCCAAGCATTGCTGAAAGTGCACCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

354

Amino Acids

38.68

Weight (kDa)

5.11

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	303, 512, 746
Acc36I	ACCTGC	1 cut(s)	861
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	584
AccII	CGCG	1 cut(s)	163
AciI	CCGC	3 cut(s)	63, 161, 163
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	83, 562
AcuI	CTGAAG	2 cut(s)	516, 534
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	3 cut(s)	698, 950, 951
AgsI	TTSAA	9 cut(s)	88, 125, 245, 393, 410, 419, 469, 567, 884
AjnI	CCWGG	1 cut(s)	519
Alw21I	GWGCWC	1 cut(s)	1053
Alw26I	GTCTC	1 cut(s)	135
Alw44I	GTGCAC	1 cut(s)	1049
AoxI	GGCC	3 cut(s)	60, 449, 953
ApaLI	GTGCAC	1 cut(s)	1049
ApeKI	GCWGC	6 cut(s)	19, 272, 479, 524, 827, 830
ApoI	RAATTY	2 cut(s)	83, 562
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	449, 953
AsuHPI	GGTGA	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	1053
BanI	GGYRCC	1 cut(s)	869
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	1053
BbvI	GCAGC	6 cut(s)	6, 259, 466, 536, 814, 817
BccI	CCATC	5 cut(s)	436, 469, 685, 829, 919
BceAI	ACGGC	2 cut(s)	75, 436
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	206, 342
BfmI	CTRYAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	861
BglI	GCCNNNNNGGC	1 cut(s)	867
BisI	GCNGC	7 cut(s)	20, 63, 273, 480, 525, 828, 831
BlsI	GCNGC	7 cut(s)	21, 64, 274, 481, 526, 829, 832
Bme1390I	CCNGG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	449, 953
BmiI	GGNNCC	5 cut(s)	167, 369, 459, 703, 871
BmrFI	CCNGG	1 cut(s)	521
BmrI	ACTGGG	2 cut(s)	612, 939
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	2 cut(s)	612, 939
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	698, 950, 951
Bse1I	ACTGG	4 cut(s)	169, 592, 618, 945
Bse3DI	GCAATG	2 cut(s)	534, 1037
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	3 cut(s)	124, 428, 838
BseLI	CCNNNNNNNGG	3 cut(s)	698, 950, 951
BseMI	GCAATG	2 cut(s)	534, 1037
BseNI	ACTGG	4 cut(s)	169, 592, 618, 945
BseRI	GAGGAG	2 cut(s)	360, 694
BseSI	GKGCMC	1 cut(s)	1053
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	6 cut(s)	6, 259, 466, 536, 814, 817
BsgI	GTGCAG	3 cut(s)	585, 621, 816
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	62, 451, 955
BshNI	GGYRCC	1 cut(s)	869
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	1053
BslFI	GGGAC	2 cut(s)	410, 659
BslI	CCNNNNNNNGG	3 cut(s)	698, 950, 951
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	410, 659
BsmI	GAATGC	2 cut(s)	358, 475
BsnI	GGCC	3 cut(s)	62, 451, 955
Bso31I	GGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	1053
Bsp143I	GATC	1 cut(s)	1009
BspACI	CCGC	3 cut(s)	63, 161, 163
BspANI	GGCC	3 cut(s)	62, 451, 955
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	5 cut(s)	167, 369, 459, 703, 871
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	861
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	2 cut(s)	534, 1037
BsrI	ACTGG	4 cut(s)	169, 592, 618, 945
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	1009
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	16, 595
Bst6I	CTCTTC	3 cut(s)	39, 760, 814
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	124, 428, 838
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	1012
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	1009
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	7 cut(s)	457, 479, 488, 554, 620, 867, 1048
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	1053
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	6 cut(s)	6, 259, 466, 536, 814, 817
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	62, 451, 955
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	124, 428, 838
BtsIMutI	CAGTG	3 cut(s)	483, 625, 952
BveI	ACCTGC	1 cut(s)	861
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	449, 953
Cfr42I	CCGCGG	1 cut(s)	164
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	5 cut(s)	433, 442, 698, 1024, 1059
CviJI	RGCY	7 cut(s)	62, 368, 451, 460, 702, 751, 955
CviKI_1	RGCY	7 cut(s)	62, 368, 451, 460, 702, 751, 955
CviQI	GTAC	1 cut(s)	797
DpnI	GATC	1 cut(s)	1011
DpnII	GATC	1 cut(s)	1009
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	39, 760, 814
EarI	CTCTTC	3 cut(s)	39, 760, 814
EclXI	CGGCCG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	516, 534
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	5 cut(s)	436, 445, 701, 1027, 1062
FaqI	GGGAC	2 cut(s)	410, 659
FatI	CATG	5 cut(s)	432, 441, 697, 1023, 1058
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	7 cut(s)	20, 63, 273, 480, 525, 828, 831
FokI	GGATG	3 cut(s)	131, 415, 825
Fsp4HI	GCNGC	7 cut(s)	20, 63, 273, 480, 525, 828, 831
FspBI	CTAG	2 cut(s)	206, 342
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	7 cut(s)	20, 63, 273, 480, 525, 828, 831
HaeIII	GGCC	3 cut(s)	62, 451, 955
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	436, 445, 701, 1027, 1062
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	8 cut(s)	27, 49, 109, 184, 214, 331, 346, 500
HphI	GGTGA	1 cut(s)	621
Hpy166II	GTNNAC	2 cut(s)	585, 1051
Hpy188I	TCNGA	4 cut(s)	54, 351, 553, 709
Hpy188III	TCNNGA	4 cut(s)	94, 311, 567, 1004
Hpy8I	GTNNAC	2 cut(s)	585, 1051
HpyAV	CCTTC	5 cut(s)	46, 85, 119, 440, 615
HpyCH4III	ACNGT	2 cut(s)	16, 595
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	9 cut(s)	22, 356, 491, 602, 614, 638, 833, 856, 1051
HpyF10VI	GCNNNNNNNGC	7 cut(s)	457, 479, 488, 554, 620, 867, 1048
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	436, 445, 701, 1027, 1062
HspAI	GCGC	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	1009
LmnI	GCTCC	4 cut(s)	373, 457, 707, 946
Lsp1109I	GCAGC	6 cut(s)	6, 259, 466, 536, 814, 817
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	206, 342
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	70, 947
MalI	GATC	1 cut(s)	1011
MboI	GATC	1 cut(s)	1009
MboII	GAAGA	8 cut(s)	56, 381, 422, 495, 509, 747, 754, 801
MhlI	GDGCHC	1 cut(s)	1053
MluCI	AATT	4 cut(s)	83, 562, 925, 1013
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	3 cut(s)	144, 285, 917
MslI	CAYNNNNRTG	3 cut(s)	179, 875, 1022
MspA1I	CMGCKG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	2 cut(s)	358, 475
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	7 cut(s)	457, 479, 488, 554, 620, 867, 1048
NdeII	GATC	1 cut(s)	1009
NlaIII	CATG	5 cut(s)	436, 445, 701, 1027, 1062
NlaIV	GGNNCC	5 cut(s)	167, 369, 459, 703, 871
NmuCI	GTSAC	1 cut(s)	947
NsiI	ATGCAT	1 cut(s)	358
PctI	GAATGC	2 cut(s)	358, 475
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	7 cut(s)	27, 49, 184, 214, 331, 346, 500
PkrI	GCNGC	7 cut(s)	21, 64, 274, 481, 526, 829, 832
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PsiI	TTATAA	3 cut(s)	303, 512, 746
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	5 cut(s)	167, 369, 459, 703, 871
PspPI	GGNCC	2 cut(s)	449, 953
PsrI	GAACNNNNNNTAC	2 cut(s)	984, 1016
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	3 cut(s)	179, 875, 1022
SacII	CCGCGG	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	144, 285, 917
SatI	GCNGC	7 cut(s)	20, 63, 273, 480, 525, 828, 831
Sau3AI	GATC	1 cut(s)	1009
Sau96I	GGNCC	2 cut(s)	449, 953
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	1053
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	20
Sfr303I	CCGCGG	1 cut(s)	164
SgrBI	CCGCGG	1 cut(s)	164
SmiMI	CAYNNNNRTG	3 cut(s)	179, 875, 1022
Sse9I	AATT	4 cut(s)	83, 562, 925, 1013
SsiI	CCGC	3 cut(s)	63, 161, 163
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	206, 342
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	16, 595
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	30, 42, 93, 1020
TasI	AATT	4 cut(s)	83, 562, 925, 1013
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	7 cut(s)	27, 49, 184, 214, 331, 346, 500
Tru1I	TTAA	3 cut(s)	144, 285, 917
Tru9I	TTAA	3 cut(s)	144, 285, 917
TscAI	CASTG	3 cut(s)	490, 625, 952
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	6 cut(s)	19, 272, 479, 524, 827, 830
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	9 cut(s)	28, 96, 163, 197, 252, 545, 801, 827, 1006
TspRI	CASTG	3 cut(s)	490, 625, 952
VneI	GTGCAC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	83, 562
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 439
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	206, 342
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.