Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

2173585 .. 2178153

Gene Structure 4569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02860.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCTCAGACGGGGAAATTGATGCCGAATCTCGATCAGCAGAGCACCAAAGTGCTCAATCTCACGGTGCTGCAGAGAGAGGACTGGTTGATCGATCCCTTCATCGAAGAGATTCTGATTACGGCCGCCCACGTCACCTTCTATGAATTTAACATCGAGAGCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTTGTTAAAAGGAATACTCAACCGCGTTTCCAGTTCATCGTTATGAATCGGCGCAATACTGATAACCTAGTGGAGAATGTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTATTGTATAGAAATGCATCCCAAGAAGTTAACGGCATTTGGTTTTATAACGCACGTGAATGTGAGGAAGTTGCAAATCTCTTTACTAGGATCCTGAATGCATACTCAAAGGTTCCACCAAAGTCCAAAGTGGCTTCAAGCAAAAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGTTGGTCATGGAAGGGCCGTTGGAGCCATCATTGAATCCCCCTACTGCCGCTGAGGCGCCTGAAGATTCTTCCTTTATAAGCTACCTGGCAGCTATGAATATTGGAAATAAGGCTTCAAATGCAACAAATTCAAGACTGCCCTATCAGTCTACTGGAACTGTTCCCACGCCTTCTTATGCACCCAGTGCCGTTTCACCCCCTGCACCAACTCCACAAATACCAACCCATTCCCATTCAGTCCCATCTACACCAACCCCCCTACATGGCTCCTCTGATCGATCCACCAGCAACAATCGGGTCGCTAATCTTATAAAGCCCTCTTCTTTCTTCCCTCTCCCTGTTTCCTCACCTCCTTTGGTCATACCACCTACCTCTTCATCTGTGCCATCTGCTGCTGTACTTCATCCACCCCTGAATCTGCAACGCCCTTATGGCACCCCAATGCTTCAACCCTTTCCACCACCAACACCCCCACCATCTTTAACTCCCAATTCTGCTCCTCCTGCTCCCAGTGATGGGCCTCTTATTAGCAGAGAAAAAGTTCGAGAGGCACTTGTAATGCTTGTTCAGGACGATCAATTCATCGACATGTTATACCAAGCATTGCAGAAAGTGCACCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

375

Amino Acids

41.3

Weight (kDa)

5.44

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	366, 575, 809
AccB1I	GGYRCC	2 cut(s)	553, 932
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	126, 224, 546
AclWI	GGATC	4 cut(s)	89, 403, 416, 771
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	146, 625
AcuI	CTGAAG	1 cut(s)	579
AcvI	CACGTG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	3 cut(s)	761, 1013, 1014
AflIII	ACRYGT	1 cut(s)	1086
AgsI	TTSAA	8 cut(s)	188, 308, 456, 482, 532, 615, 630, 947
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	579, 590
AluI	AGCT	2 cut(s)	579, 590
Alw21I	GWGCWC	3 cut(s)	47, 57, 1116
Alw26I	GTCTC	2 cut(s)	9, 198
Alw44I	GTGCAC	1 cut(s)	1112
AlwI	GGATC	4 cut(s)	89, 403, 416, 771
AoxI	GGCC	3 cut(s)	123, 512, 1016
ApaLI	GTGCAC	1 cut(s)	1112
ApeKI	GCWGC	3 cut(s)	70, 587, 890
ApoI	RAATTY	2 cut(s)	146, 625
Asp700I	GAANNNNTTC	2 cut(s)	111, 1038
AspLEI	GCGC	2 cut(s)	255, 556
AspS9I	GGNCC	2 cut(s)	512, 1016
AsuHPI	GGTGA	3 cut(s)	127, 684, 837
BaeGI	GKGCMC	1 cut(s)	1116
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	2 cut(s)	553, 932
BbrPI	CACGTG	1 cut(s)	374
Bbv12I	GWGCWC	3 cut(s)	47, 57, 1116
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	57, 599, 877
BccI	CCATC	6 cut(s)	499, 532, 748, 892, 982, 1007
BceAI	ACGGC	4 cut(s)	138, 367, 499, 671
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	2 cut(s)	9, 198
BfaI	CTAG	2 cut(s)	269, 405
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	557
BglI	GCCNNNNNGGC	2 cut(s)	551, 930
BisI	GCNGC	5 cut(s)	71, 126, 546, 588, 891
BlsI	GCNGC	5 cut(s)	72, 127, 547, 589, 892
Bme1390I	CCNGG	1 cut(s)	584
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	512, 1016
BmiI	GGNNCC	6 cut(s)	410, 432, 522, 555, 766, 934
BmrFI	CCNGG	1 cut(s)	584
BmrI	ACTGGG	2 cut(s)	675, 1002
BmsI	GCATC	2 cut(s)	12, 344
BmuI	ACTGGG	2 cut(s)	675, 1002
Bpu10I	CCTNAGC	1 cut(s)	549
Bsa29I	ATCGAT	2 cut(s)	93, 775
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	3 cut(s)	761, 1013, 1014
Bse1I	ACTGG	5 cut(s)	89, 232, 655, 681, 1008
Bse3DI	GCAATG	1 cut(s)	1100
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	2 cut(s)	93, 775
BseGI	GGATG	4 cut(s)	187, 335, 491, 901
BseLI	CCNNNNNNNGG	3 cut(s)	761, 1013, 1014
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	2 cut(s)	20, 540
BseNI	ACTGG	5 cut(s)	89, 232, 655, 681, 1008
BseRI	GAGGAG	2 cut(s)	757, 987
BseSI	GKGCMC	1 cut(s)	1116
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	57, 599, 877
BsgI	GTGCAG	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	125, 514, 1018
BshNI	GGYRCC	2 cut(s)	553, 932
BshVI	ATCGAT	2 cut(s)	93, 775
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	3 cut(s)	47, 57, 1116
BslFI	GGGAC	2 cut(s)	473, 722
BslI	CCNNNNNNNGG	3 cut(s)	761, 1013, 1014
BsmAI	GTCTC	2 cut(s)	9, 198
BsmFI	GGGAC	2 cut(s)	473, 722
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	125, 514, 1018
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	47, 57, 1116
Bsp143I	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
BspACI	CCGC	3 cut(s)	126, 224, 546
BspANI	GGCC	3 cut(s)	125, 514, 1018
BspCNI	CTCAG	2 cut(s)	19, 541
BspDI	ATCGAT	2 cut(s)	93, 775
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	6 cut(s)	410, 432, 522, 555, 766, 934
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	4 cut(s)	89, 403, 416, 771
BspT107I	GGYRCC	2 cut(s)	553, 932
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	1100
BsrI	ACTGG	5 cut(s)	89, 232, 655, 681, 1008
BssMI	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
BssNI	GRCGYC	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	67, 658
Bst6I	CTCTTC	3 cut(s)	102, 823, 877
BstACI	GRCGYC	1 cut(s)	554
BstAPI	GCANNNNNTGC	2 cut(s)	683, 1111
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	6, 549
BstF5I	GGATG	4 cut(s)	187, 335, 491, 901
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	255, 556
BstKTI	GATC	7 cut(s)	37, 93, 97, 411, 775, 779, 1075
BstMAI	GTCTC	2 cut(s)	9, 198
BstMBI	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	7 cut(s)	520, 551, 617, 683, 930, 1001, 1111
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	1116
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	57, 599, 877
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BstZI	CGGCCG	1 cut(s)	123
Bsu15I	ATCGAT	2 cut(s)	93, 775
BsuRI	GGCC	3 cut(s)	125, 514, 1018
BsuTUI	ATCGAT	2 cut(s)	93, 775
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	187, 335, 491, 901
BtsIMutI	CAGTG	2 cut(s)	688, 1015
CfoI	GCGC	2 cut(s)	255, 556
Cfr13I	GGNCC	2 cut(s)	512, 1016
ClaI	ATCGAT	2 cut(s)	93, 775
Csp6I	GTAC	1 cut(s)	896
CviAII	CATG	5 cut(s)	496, 505, 761, 1087, 1122
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	2 cut(s)	6, 549
DinI	GGCGCC	1 cut(s)	555
DpnI	GATC	7 cut(s)	36, 92, 96, 410, 774, 778, 1074
DpnII	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
DraIII	CACNNNGTG	1 cut(s)	683
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
Eam1104I	CTCTTC	3 cut(s)	102, 823, 877
EarI	CTCTTC	3 cut(s)	102, 823, 877
EclXI	CGGCCG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	579
Eco72I	CACGTG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	582
EcoT22I	ATGCAT	2 cut(s)	337, 421
EgeI	GGCGCC	1 cut(s)	555
EheI	GGCGCC	1 cut(s)	555
FaeI	CATG	5 cut(s)	499, 508, 764, 1090, 1125
FaqI	GGGAC	2 cut(s)	473, 722
FatI	CATG	5 cut(s)	495, 504, 760, 1086, 1121
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	5 cut(s)	71, 126, 546, 588, 891
FokI	GGATG	4 cut(s)	194, 322, 478, 888
Fsp4HI	GCNGC	5 cut(s)	71, 126, 546, 588, 891
FspBI	CTAG	2 cut(s)	269, 405
GlaI	GCGC	2 cut(s)	254, 555
GluI	GCNGC	5 cut(s)	71, 126, 546, 588, 891
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	3 cut(s)	125, 514, 1018
HhaI	GCGC	2 cut(s)	255, 556
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	499, 508, 764, 1090, 1125
Hin6I	GCGC	2 cut(s)	253, 554
HinP1I	GCGC	2 cut(s)	253, 554
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	7 cut(s)	28, 112, 172, 247, 532, 563, 913
HpaI	GTTAAC	1 cut(s)	349
HphI	GGTGA	3 cut(s)	127, 684, 837
Hpy166II	GTNNAC	3 cut(s)	349, 648, 1114
Hpy188I	TCNGA	3 cut(s)	9, 117, 772
Hpy188III	TCNNGA	6 cut(s)	32, 157, 412, 630, 1043, 1067
Hpy8I	GTNNAC	3 cut(s)	349, 648, 1114
HpyAV	CCTTC	5 cut(s)	109, 148, 182, 503, 678
HpyCH4III	ACNGT	2 cut(s)	67, 658
HpyCH4IV	ACGT	2 cut(s)	132, 373
HpyF10VI	GCNNNNNNNGC	7 cut(s)	520, 551, 617, 683, 930, 1001, 1111
HpyF3I	CTNAG	2 cut(s)	6, 549
HpySE526I	ACGT	2 cut(s)	132, 373
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	5 cut(s)	499, 508, 764, 1090, 1125
HspAI	GCGC	2 cut(s)	253, 554
KasI	GGCGCC	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
LmnI	GCTCC	4 cut(s)	520, 770, 1000, 1009
Lsp1109I	GCAGC	3 cut(s)	57, 599, 877
LweI	GCATC	2 cut(s)	12, 344
MaeI	CTAG	2 cut(s)	269, 405
MaeII	ACGT	2 cut(s)	132, 373
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	7 cut(s)	36, 92, 96, 410, 774, 778, 1074
MboI	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
MboII	GAAGA	6 cut(s)	119, 558, 572, 810, 817, 864
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	3 cut(s)	47, 57, 1116
MluCI	AATT	5 cut(s)	17, 146, 625, 988, 1076
Mly113I	GGCGCC	1 cut(s)	554
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	498
Mph1103I	ATGCAT	2 cut(s)	337, 421
MroXI	GAANNNNTTC	2 cut(s)	111, 1038
MseI	TTAA	4 cut(s)	150, 207, 348, 980
MslI	CAYNNNNRTG	5 cut(s)	50, 242, 376, 938, 1085
MspA1I	CMGCKG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	7 cut(s)	520, 551, 617, 683, 930, 1001, 1111
NarI	GGCGCC	1 cut(s)	554
NdeII	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
NlaIII	CATG	5 cut(s)	499, 508, 764, 1090, 1125
NlaIV	GGNNCC	6 cut(s)	410, 432, 522, 555, 766, 934
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	337, 421
NspI	RCATGY	1 cut(s)	1090
OliI	CACNNNNGTG	1 cut(s)	50
PciI	ACATGT	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	111, 1038
PfeI	GAWTC	6 cut(s)	28, 112, 247, 532, 563, 913
PkrI	GCNGC	5 cut(s)	72, 127, 547, 589, 892
PleI	GAGTC	1 cut(s)	180
PluTI	GGCGCC	1 cut(s)	557
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	180
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	1 cut(s)	1086
PsiI	TTATAA	3 cut(s)	366, 575, 809
Psp6I	CCWGG	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	6 cut(s)	410, 432, 522, 555, 766, 934
PspPI	GGNCC	2 cut(s)	512, 1016
PsrI	GAACNNNNNNTAC	2 cut(s)	1047, 1079
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	5 cut(s)	50, 242, 376, 938, 1085
SaqAI	TTAA	4 cut(s)	150, 207, 348, 980
SatI	GCNGC	5 cut(s)	71, 126, 546, 588, 891
Sau3AI	GATC	7 cut(s)	34, 90, 94, 408, 772, 776, 1072
Sau96I	GGNCC	2 cut(s)	512, 1016
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	3 cut(s)	47, 57, 1116
SfaNI	GCATC	2 cut(s)	12, 344
SfcI	CTRYAG	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	5 cut(s)	50, 242, 376, 938, 1085
Sse9I	AATT	5 cut(s)	17, 146, 625, 988, 1076
SsiI	CCGC	3 cut(s)	126, 224, 546
SspDI	GGCGCC	1 cut(s)	553
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	269, 405
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	67, 658
TaiI	ACGT	2 cut(s)	135, 376
TaqI	TCGA	7 cut(s)	33, 93, 105, 156, 775, 1042, 1083
TasI	AATT	5 cut(s)	17, 146, 625, 988, 1076
TatI	WGTACW	1 cut(s)	895
TauI	GCSGC	2 cut(s)	128, 548
TfiI	GAWTC	6 cut(s)	28, 112, 247, 532, 563, 913
Tru1I	TTAA	4 cut(s)	150, 207, 348, 980
Tru9I	TTAA	4 cut(s)	150, 207, 348, 980
TscAI	CASTG	2 cut(s)	688, 1015
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	70, 587, 890
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	9 cut(s)	91, 159, 226, 260, 315, 608, 864, 890, 1069
TspRI	CASTG	2 cut(s)	688, 1015
VneI	GTGCAC	1 cut(s)	1112
XapI	RAATTY	2 cut(s)	146, 625
XceI	RCATGY	1 cut(s)	1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	647
XmnI	GAANNNNTTC	2 cut(s)	111, 1038
XspI	CTAG	2 cut(s)	269, 405
Zsp2I	ATGCAT	2 cut(s)	337, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.