Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Reverse (-)

29611935 .. 29614361

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGCACACAAAGCATAGCACAAGATTTAAAGCAGATTCTTAATGCATACTCAAAGGTTCCTCCAAAGTCCAAAGTAGCTTCTAGCAAAAGTGAACCTCCTGAAGATTCATCCTTTGTGAACTACTTGGCAGCTATGAATATTGGAGGTAACACTTCAAACATTGCAAATTCAGGACAGCCCTATCCTTCTTCTGGAACCGCTCCTCCGTCTTCCTATGCACCCAATGTCGTTTCATCTCCCGCACCATCCCCACTAGTACCTGCCCTTTCCCTTTCAGCCTCATCTACACAAACACCTTTGCCCGGTACATCTGATTTAACAACCAGCAGCAGCCGGGTGGCTAATCTTATAAAGCCATCTTCCTTTTTCCCTCTACCTGCTTCCTCATCTTCAGTGATTGTACCTCCCATTTCTTCAGCTGTGCCTGTTCCAACTGCCGGTGCTCTTCATCCTCCTGTGAATTTGCAACGCCCATATGGCACTCCAATGCTTCAACCCTTTCCACCACCAACACCACCTCCATCTTTAACTCCTAATGCTCCTCCCACTCCCAACGATGGGTCTCATATAAGCAGAGAAAAAGTTCGGGATGCACTTCTGATGCTTGTTCAGGACGATCAATTCATTGACATGTTTCACCATGCATTGCTGAAAGTGCAACATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

224

Amino Acids

23.26

Weight (kDa)

7.9

Isoelectric Point (pI)

73.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
Acc36I	ACCTGC	2 cut(s)	271, 388
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	2 cut(s)	201, 243
AcsI	RAATTY	2 cut(s)	169, 463
AcuI	CTGAAG	3 cut(s)	123, 378, 402
AfaI	GTAC	3 cut(s)	261, 310, 405
AfiI	CCNNNNNNNGG	5 cut(s)	194, 305, 440, 560, 561
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	2 cut(s)	159, 497
AhlI	ACTAGT	1 cut(s)	256
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	3 cut(s)	80, 134, 422
AluI	AGCT	3 cut(s)	80, 134, 422
Alw21I	GWGCWC	2 cut(s)	8, 448
Alw26I	GTCTC	1 cut(s)	570
Alw44I	GTGCAC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	3 cut(s)	131, 330, 333
ApoI	RAATTY	2 cut(s)	169, 463
Asp700I	GAANNNNTTC	1 cut(s)	585
AsuC2I	CCSGG	2 cut(s)	306, 338
AsuHPI	GGTGA	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	8, 448
BbvI	GCAGC	3 cut(s)	143, 342, 345
BccI	CCATC	4 cut(s)	256, 367, 532, 554
BcnI	CCSGG	2 cut(s)	306, 338
BcoDI	GTCTC	1 cut(s)	570
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	84, 257
BfuAI	ACCTGC	2 cut(s)	271, 388
BglI	GCCNNNNNGGC	1 cut(s)	480
BisI	GCNGC	3 cut(s)	132, 331, 334
BlsI	GCNGC	3 cut(s)	133, 332, 335
Bme1390I	CCNGG	2 cut(s)	306, 338
BmiI	GGNNCC	2 cut(s)	60, 199
BmrFI	CCNGG	2 cut(s)	306, 338
BmsI	GCATC	2 cut(s)	583, 594
BpiI	GAAGAC	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	306, 338
BsaI	GGTCTC	1 cut(s)	570
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 505, 535
Bsc4I	CCNNNNNNNGG	5 cut(s)	194, 305, 440, 560, 561
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	2 cut(s)	162, 647
BseGI	GGATG	4 cut(s)	110, 248, 451, 598
BseLI	CCNNNNNNNGG	5 cut(s)	194, 305, 440, 560, 561
BseMI	GCAATG	2 cut(s)	162, 647
BseRI	GAGGAG	2 cut(s)	195, 534
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	143, 342, 345
BsiHKAI	GWGCWC	2 cut(s)	8, 448
BsiSI	CCGG	3 cut(s)	306, 337, 441
BslI	CCNNNNNNNGG	5 cut(s)	194, 305, 440, 560, 561
BsmAI	GTCTC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	8, 448
Bsp143I	GATC	1 cut(s)	619
BspACI	CCGC	2 cut(s)	201, 243
BspLI	GGNNCC	2 cut(s)	60, 199
BspMI	ACCTGC	2 cut(s)	271, 388
BspQI	GCTCTTC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	570
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	162, 647
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	453
BstF5I	GGATG	4 cut(s)	110, 248, 451, 598
BstKTI	GATC	1 cut(s)	622
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	1 cut(s)	619
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 480, 658
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	304, 336
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	143, 342, 345
BstV2I	GAAGAC	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	110, 248, 451, 598
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	2 cut(s)	271, 388
Cfr10I	RCCGGY	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	260, 309, 404
CviAII	CATG	3 cut(s)	634, 644, 669
CviJI	RGCY	8 cut(s)	80, 134, 181, 281, 336, 344, 358, 422
CviKI_1	RGCY	8 cut(s)	80, 134, 181, 281, 336, 344, 358, 422
CviQI	GTAC	3 cut(s)	260, 309, 404
DpnI	GATC	1 cut(s)	621
DpnII	GATC	1 cut(s)	619
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	570
Eco57I	CTGAAG	3 cut(s)	123, 378, 402
EcoT22I	ATGCAT	2 cut(s)	49, 649
FaeI	CATG	3 cut(s)	637, 647, 672
FatI	CATG	3 cut(s)	633, 643, 668
FauI	CCCGC	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	132, 331, 334
FokI	GGATG	4 cut(s)	97, 235, 438, 605
Fsp4HI	GCNGC	3 cut(s)	132, 331, 334
FspBI	CTAG	2 cut(s)	84, 257
GluI	GCNGC	3 cut(s)	132, 331, 334
HapII	CCGG	3 cut(s)	306, 337, 441
Hin1II	CATG	3 cut(s)	637, 647, 672
HinfI	GANTC	2 cut(s)	37, 107
HpaII	CCGG	3 cut(s)	306, 337, 441
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	6, 95, 121
Hpy188I	TCNGA	2 cut(s)	316, 603
Hpy188III	TCNNGA	5 cut(s)	101, 174, 195, 590, 614
Hpy8I	GTNNAC	3 cut(s)	6, 95, 121
HpyAV	CCTTC	1 cut(s)	198
HpyCH4V	TGCA	8 cut(s)	6, 47, 167, 221, 469, 596, 647, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 480, 658
Hsp92II	CATG	3 cut(s)	637, 647, 672
Kzo9I	GATC	1 cut(s)	619
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	208, 547
Lsp1109I	GCAGC	3 cut(s)	143, 342, 345
LweI	GCATC	2 cut(s)	583, 594
MaeI	CTAG	2 cut(s)	84, 257
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	621
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	1 cut(s)	619
MboII	GAAGA	7 cut(s)	116, 183, 204, 354, 384, 408, 440
MhlI	GDGCHC	2 cut(s)	8, 448
MluCI	AATT	3 cut(s)	169, 463, 623
MmeI	TCCRAC	1 cut(s)	458
Mph1103I	ATGCAT	2 cut(s)	49, 649
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	4 cut(s)	29, 42, 320, 530
MslI	CAYNNNNRTG	2 cut(s)	488, 632
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	306, 337, 441
MspR9I	CCNGG	2 cut(s)	306, 338
MwoI	GCNNNNNNNGC	3 cut(s)	12, 480, 658
NciI	CCSGG	2 cut(s)	306, 338
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	619
NlaIII	CATG	3 cut(s)	637, 647, 672
NlaIV	GGNNCC	2 cut(s)	60, 199
NsiI	ATGCAT	2 cut(s)	49, 649
NspI	RCATGY	1 cut(s)	637
PciI	ACATGT	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	37, 107
PkrI	GCNGC	3 cut(s)	133, 332, 335
PscI	ACATGT	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	60, 199
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	261, 310, 405
RsaNI	GTAC	3 cut(s)	260, 309, 404
RseI	CAYNNNNRTG	2 cut(s)	488, 632
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	29, 42, 320, 530
SatI	GCNGC	3 cut(s)	132, 331, 334
Sau3AI	GATC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	306, 338
SduI	GDGCHC	2 cut(s)	8, 448
SfaNI	GCATC	2 cut(s)	583, 594
SmiMI	CAYNNNNRTG	2 cut(s)	488, 632
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	169, 463, 623
SsiI	CCGC	2 cut(s)	201, 243
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	2 cut(s)	84, 257
StyD4I	CCNGG	2 cut(s)	304, 336
TasI	AATT	3 cut(s)	169, 463, 623
TfiI	GAWTC	2 cut(s)	37, 107
Tru1I	TTAA	4 cut(s)	29, 42, 320, 530
Tru9I	TTAA	4 cut(s)	29, 42, 320, 530
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	131, 330, 333
TspDTI	ATGAA	5 cut(s)	99, 152, 225, 440, 616
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	402
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	169, 463
XceI	RCATGY	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	2 cut(s)	84, 257
Zsp2I	ATGCAT	2 cut(s)	49, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.