FvH4_6g19510

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002391
Physical Location & Seq
Forward (+)
13034662 .. 13039984
5323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19510.t3

Sequence Viewer

Length: 1116 bp
ATGTCTCAATCGGGGAAACTGATGCCGAATCTGGATCAACAGACGACCAAAATGCTCAATCTCACCGTCCTCCAGCGAATCGACCCCTTCATCGAAGAGATTCTCATCACCGCCGCCCACGTCACCTTCTACGAATTCAACATCGAGAATAACCAATGGAGTCGCAAGGATGTTGAAGGCTCTCTCTTTGTGGTCAAGAGGAATACTCAGCCACGGTTCCAGTTCATTGTTATGAATCGGCGTAACACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCGTATTTGTTGTATAGGAATGCAGCTCAAGAAGTTAATGGCATTTGGTTTTATAATCCACGTGAATGTGAGGAAGTTGCAAATCTCTTCACTAGGATTCTTAACGCATACTCAAAGGTTCCTCCAAAGTCCAAAGTAGCTTCTAGCAAAAGTGAGTTTGAAGAACTTGAAGCAGTCCCATCCATGTTGGTTATGGAAGGGCCATTGGAGCCATCAGTGAACGCCACTACTGCCAGCGAACCTCCTGAAGATTCATCCTTCGTGAACTATTTGGCAGCTATGAATATTGGAGGCAACACTTCAAACATGGCAAATTCAAGACCGACGTATCCTTCTTCTGGAACCGCTCCTCCATTTTCTTATGCACCCAGTGTCATTTCATCTCCTGCACCATCTCCACTGGTACCAGCCCTTTCCCTTTCAGCCTCATCTACACAAAACCCCTTGCCCAGTACATCTGATTTAACAACCAGCAATAGCCGGGTGGCTAATCTTATAAAGCCGGATGACTTTTTCCCTTTACCTGCTTCCTCATCTTCTGGAATTGTACCACCCATTTCATCGGCTGTGCCCGTTCCTACTGCTGGTGCTCTTCATCCTCCTGTGAATTTGCAACGCCCGTACGGCACCCCAATGCTTCAACCCTTTCCACCGCCAGCGCCACCTCCATCTTTAACTCCTAATGCTCCTCCCACTCCCAATGATGGGCCTCATATAAGCAGAGAAAAAGTTCGGGAAGCACTTCTGATGCTTGTTCAGGATGATCAATTCATCGACATGTTTTACCATGCATTGCTGAAAGTGCACCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

372

Amino Acids

40.78

Weight (kDa)

5.14

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 1 - 54 4.5e-16 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 797
Acc36I ACCTGC 1 cut(s) 832
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 2 cut(s) 703, 926
AccBSI CCGCTC 1 cut(s) 647
AciI CCGC 4 cut(s) 111, 114, 645, 953
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 3 cut(s) 134, 613, 907
AcuI CTGAAG 1 cut(s) 567
AcvI CACGTG 1 cut(s) 362
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 4 cut(s) 705, 754, 849, 923
AfiI CCNNNNNNNGG 4 cut(s) 638, 884, 1004, 1005
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 8 cut(s) 139, 176, 296, 461, 470, 603, 618, 941
AjiI CACGTC 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 634, 666
AluBI AGCT 3 cut(s) 326, 440, 578
AluI AGCT 3 cut(s) 326, 440, 578
Alw21I GWGCWC 2 cut(s) 892, 1107
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 1103
AlwI GGATC 1 cut(s) 42
AoxI GGCC 2 cut(s) 500, 1007
ApaLI GTGCAC 1 cut(s) 1103
ApeKI GCWGC 2 cut(s) 323, 575
ApoI RAATTY 3 cut(s) 134, 613, 907
Asp700I GAANNNNTTC 3 cut(s) 99, 1029, 1041
Asp718I GGTACC 1 cut(s) 703
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 2 cut(s) 500, 1007
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 3 cut(s) 55, 100, 115
BaeGI GKGCMC 2 cut(s) 873, 1107
BaeI ACNNNNGTAYC 2 cut(s) 611, 644
BanI GGYRCC 2 cut(s) 703, 926
BbrPI CACGTG 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 892, 1107
BbvI GCAGC 2 cut(s) 335, 587
BccI CCATC 5 cut(s) 487, 520, 700, 976, 998
BceAI ACGGC 1 cut(s) 940
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciVI GTATCC 1 cut(s) 639
BclI TGATCA 1 cut(s) 1063
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 257, 393, 444
BfoI RGCGCY 1 cut(s) 962
BfuAI ACCTGC 1 cut(s) 832
BfuI GTATCC 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 924
BisI GCNGC 3 cut(s) 114, 324, 576
BlsI GCNGC 3 cut(s) 115, 325, 577
Bme1390I CCNGG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 500, 1007
BmiI GGNNCC 6 cut(s) 218, 420, 510, 643, 705, 928
BmrFI CCNGG 1 cut(s) 782
BmrI ACTGGG 2 cut(s) 663, 744
BmsI GCATC 2 cut(s) 12, 1038
BmuI ACTGGG 2 cut(s) 663, 744
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 4 cut(s) 638, 884, 1004, 1005
Bse1I ACTGG 4 cut(s) 220, 669, 705, 750
Bse3DI GCAATG 1 cut(s) 1091
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 6 cut(s) 175, 479, 554, 811, 895, 1066
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 4 cut(s) 638, 884, 1004, 1005
BseMI GCAATG 1 cut(s) 1091
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 4 cut(s) 220, 669, 705, 750
BseRI GAGGAG 2 cut(s) 639, 978
BseSI GKGCMC 2 cut(s) 873, 1107
BseXI GCAGC 2 cut(s) 335, 587
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 2 cut(s) 502, 1009
BshNI GGYRCC 2 cut(s) 703, 926
BsiHKAI GWGCWC 2 cut(s) 892, 1107
BsiSI CCGG 2 cut(s) 781, 803
BsiWI CGTACG 1 cut(s) 921
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 4 cut(s) 638, 884, 1004, 1005
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 502, 1009
Bsp1286I GDGCHC 3 cut(s) 873, 892, 1107
Bsp143I GATC 2 cut(s) 34, 1063
BspACI CCGC 4 cut(s) 111, 114, 645, 953
BspANI GGCC 2 cut(s) 502, 1009
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 6 cut(s) 218, 420, 510, 643, 705, 928
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 897
BspT107I GGYRCC 2 cut(s) 703, 926
BsrBI CCGCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 1091
BsrI ACTGG 4 cut(s) 220, 669, 705, 750
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 2 cut(s) 34, 1063
Bst4CI ACNGT 2 cut(s) 67, 216
Bst6I CTCTTC 3 cut(s) 90, 392, 897
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 535, 957
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 212
BstF5I GGATG 6 cut(s) 175, 479, 554, 811, 895, 1066
BstH2I RGCGCY 1 cut(s) 962
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 2 cut(s) 37, 1066
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 34, 1063
BstMWI GCNNNNNNNGC 4 cut(s) 508, 530, 924, 1102
BstNSI RCATGY 1 cut(s) 1081
BstSCI CCNGG 1 cut(s) 780
BstSLI GKGCMC 2 cut(s) 873, 1107
BstV1I GCAGC 2 cut(s) 335, 587
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 2 cut(s) 502, 1009
BtgI CCRYGG 1 cut(s) 212
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 6 cut(s) 175, 479, 554, 811, 895, 1066
BtsIMutI CAGTG 3 cut(s) 522, 676, 698
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 535, 957
CfoI GCGC 1 cut(s) 961
Cfr13I GGNCC 2 cut(s) 500, 1007
Csp6I GTAC 4 cut(s) 704, 753, 848, 922
CviAII CATG 5 cut(s) 484, 607, 1078, 1088, 1113
CviQI GTAC 4 cut(s) 704, 753, 848, 922
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 36, 1065
DpnII GATC 2 cut(s) 34, 1063
DraIII CACNNNGTG 1 cut(s) 671
Eam1104I CTCTTC 3 cut(s) 90, 392, 897
EarI CTCTTC 3 cut(s) 90, 392, 897
Eco57I CTGAAG 1 cut(s) 567
Eco72I CACGTG 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 1093
FaeI CATG 5 cut(s) 487, 610, 1081, 1091, 1116
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 483, 606, 1077, 1087, 1112
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 3 cut(s) 114, 324, 576
FokI GGATG 6 cut(s) 182, 466, 541, 818, 882, 1073
Fsp4HI GCNGC 3 cut(s) 114, 324, 576
FspBI CTAG 3 cut(s) 257, 393, 444
GlaI GCGC 1 cut(s) 960
GluI GCNGC 3 cut(s) 114, 324, 576
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 962
HaeIII GGCC 2 cut(s) 502, 1009
HapII CCGG 2 cut(s) 781, 803
HhaI GCGC 1 cut(s) 961
Hin1II CATG 5 cut(s) 487, 610, 1081, 1091, 1116
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HinfI GANTC 8 cut(s) 28, 78, 100, 160, 235, 265, 397, 551
HpaII CCGG 2 cut(s) 781, 803
HphI GGTGA 3 cut(s) 55, 100, 115
Hpy166II GTNNAC 3 cut(s) 520, 565, 1105
Hpy188I TCNGA 2 cut(s) 760, 1047
Hpy8I GTNNAC 3 cut(s) 520, 565, 1105
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 6 cut(s) 97, 136, 170, 491, 568, 642
HpyCH4III ACNGT 2 cut(s) 67, 216
HpyCH4IV ACGT 3 cut(s) 120, 361, 626
HpyCH4V TGCA 7 cut(s) 323, 380, 665, 689, 913, 1091, 1105
HpyF10VI GCNNNNNNNGC 4 cut(s) 508, 530, 924, 1102
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 3 cut(s) 120, 361, 626
Hsp92II CATG 5 cut(s) 487, 610, 1081, 1091, 1116
HspAI GCGC 1 cut(s) 959
KpnI GGTACC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 2 cut(s) 34, 1063
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 3 cut(s) 508, 652, 991
Lsp1109I GCAGC 2 cut(s) 335, 587
LweI GCATC 2 cut(s) 12, 1038
MaeI CTAG 3 cut(s) 257, 393, 444
MaeII ACGT 3 cut(s) 120, 361, 626
MaeIII GTNAC 2 cut(s) 121, 242
MalI GATC 2 cut(s) 36, 1065
MbiI CCGCTC 1 cut(s) 647
MboI GATC 2 cut(s) 34, 1063
MboII GAAGA 7 cut(s) 107, 379, 473, 560, 627, 828, 884
MhlI GDGCHC 3 cut(s) 873, 892, 1107
MluCI AATT 5 cut(s) 134, 613, 843, 907, 1067
MlyI GAGTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 3 cut(s) 99, 1029, 1041
MseI TTAA 4 cut(s) 336, 402, 764, 974
MslI CAYNNNNRTG 4 cut(s) 230, 364, 932, 1076
MspI CCGG 2 cut(s) 781, 803
MspR9I CCNGG 1 cut(s) 782
Mva1269I GAATGC 1 cut(s) 325
MwoI GCNNNNNNNGC 4 cut(s) 508, 530, 924, 1102
NciI CCSGG 1 cut(s) 782
NdeII GATC 2 cut(s) 34, 1063
NlaIII CATG 5 cut(s) 487, 610, 1081, 1091, 1116
NlaIV GGNNCC 6 cut(s) 218, 420, 510, 643, 705, 928
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 1093
NspI RCATGY 1 cut(s) 1081
PciI ACATGT 1 cut(s) 1077
PciSI GCTCTTC 1 cut(s) 897
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 3 cut(s) 99, 1029, 1041
PfeI GAWTC 7 cut(s) 28, 78, 100, 235, 265, 397, 551
Pfl23II CGTACG 1 cut(s) 921
PkrI GCNGC 3 cut(s) 115, 325, 577
PleI GAGTC 1 cut(s) 168
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 362
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 2 cut(s) 354, 797
PspCI CACGTG 1 cut(s) 362
PspLI CGTACG 1 cut(s) 921
PspN4I GGNNCC 6 cut(s) 218, 420, 510, 643, 705, 928
PspPI GGNCC 2 cut(s) 500, 1007
RsaI GTAC 4 cut(s) 705, 754, 849, 923
RsaNI GTAC 4 cut(s) 704, 753, 848, 922
RseI CAYNNNNRTG 4 cut(s) 230, 364, 932, 1076
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 4 cut(s) 336, 402, 764, 974
SatI GCNGC 3 cut(s) 114, 324, 576
Sau3AI GATC 2 cut(s) 34, 1063
Sau96I GGNCC 2 cut(s) 500, 1007
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 3 cut(s) 873, 892, 1107
SfaNI GCATC 2 cut(s) 12, 1038
SmiMI CAYNNNNRTG 4 cut(s) 230, 364, 932, 1076
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 5 cut(s) 134, 613, 843, 907, 1067
SsiI CCGC 4 cut(s) 111, 114, 645, 953
SspI AATATT 1 cut(s) 586
SspMI CTAG 3 cut(s) 257, 393, 444
StyD4I CCNGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 67, 216
TaiI ACGT 3 cut(s) 123, 364, 629
TaqI TCGA 4 cut(s) 81, 93, 144, 1074
TaqII GACCGA 1 cut(s) 637
TasI AATT 5 cut(s) 134, 613, 843, 907, 1067
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 7 cut(s) 28, 78, 100, 235, 265, 397, 551
Tru1I TTAA 4 cut(s) 336, 402, 764, 974
Tru9I TTAA 4 cut(s) 336, 402, 764, 974
TscAI CASTG 3 cut(s) 522, 676, 705
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 323, 575
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 3 cut(s) 522, 676, 705
VneI GTGCAC 1 cut(s) 1103
XapI RAATTY 3 cut(s) 134, 613, 907
XceI RCATGY 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmnI GAANNNNTTC 3 cut(s) 99, 1029, 1041
XspI CTAG 3 cut(s) 257, 393, 444
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.