FvH4_3g25640

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002391
Physical Location & Seq
Forward (+)
18536065 .. 18542752
6688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25640.t1

Sequence Viewer

Length: 1083 bp
ATGGCATCGCAGAACGGGAAGGTGAGGCCGAATCTGGACGAGAAGACCACGAAGGTGTTGAACCTGACGGTGCTGCAGCGAAGGGACCCTTTCGTGGAGGAAATCCTCATCACTTCTACACACGTCACCTTCTACAAGTTCGACACCTCCACCAGCCAGTGGAGTCGCAAAGACGTCGAGGGTCCTCTTTTCGTCGTCAAGCGGAACGCCCAGCCTCGCTTTCAGTTCATTGTCATGAACCGCCTCAATACTGAAAATTTAGTGGAGGATCTTTTGGGAGATTTTGAATGTGAAGTCCAGCTTCCGTATCTGTTATATCGAAATGCAAAGCGAGAGGTGAATGGTATTTGGTTTTATAATGCAGCTGAGTGTGAGGAGGTGGCTAATCTTTTCAGCAGGATACTGGGTGCATATTCCAAGGTGCCTCAAAAGGCTACAGTATCAACTGCAAAGAGTGAGTTTGAGGAACTAGAAGCAGTCCCAACCATGGATGTTATGGACGGTCCTTTAGAGCCATCATCGTCAACTGCATCCAATATCACAGATGTTCCTGATGACCATGCCTTTGTTAACTTCTTTAGTGCAGCTTCGCATACAGCAGTTACTGGACAAGCTTACCAGTCTTCTACAATCTCTTTCCCCTTGCATCAAGTCGGCTTTGCCCCTTCTGCTATTCCTAGCATTCACGTATCATCTCATCCACATTTATCAACTGTGCCATCAGTCCCTTCCCTTGACGTCCCAGAATCCCACAGCAACACCAACCTGGCCACTAATCTTGTAAAGCCATCATTTTTTGTTCCCACTCCTGCAACAGCGATTGCACCCGTCTCTTCATCAGTGCCTAGTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACATCATCCGTATGGTGCACCTTTGCTACAACCTTTTCCCCCATCTGCCCCTCCACCATCTCTGACTCCTGCTTCTTATTCTACTTCAAACTATGGGCCGGTTATTAATAAAGATAAAGTCCGAGATGCACTTCGGCTGCTTGTTCAGGATAATCAATTCGTTGACATGGTCCATAAAGCAGTCCTTAAAGCACACCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

361

Amino Acids

39.52

Weight (kDa)

5.99

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 19 - 132 6.3e-45 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AatII GACGTC 2 cut(s) 177, 741
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 877
AciI CCGC 2 cut(s) 202, 241
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 2 cut(s) 174, 738
AfiI CCNNNNNNNGG 3 cut(s) 94, 159, 487
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 61, 287, 863, 966
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 765
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 4 cut(s) 301, 365, 587, 614
AluI AGCT 4 cut(s) 301, 365, 587, 614
Alw21I GWGCWC 2 cut(s) 853, 898
Alw26I GTCTC 1 cut(s) 835
Alw44I GTGCAC 1 cut(s) 894
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 3 cut(s) 26, 768, 974
ApaLI GTGCAC 1 cut(s) 894
ApeKI GCWGC 5 cut(s) 73, 76, 362, 584, 1015
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AseI ATTAAT 1 cut(s) 984
AspS9I GGNCC 5 cut(s) 85, 182, 503, 974, 1048
AsuHPI GGTGA 3 cut(s) 34, 118, 349
AvaII GGWCC 4 cut(s) 85, 182, 503, 1048
BaeGI GKGCMC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 770
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 50, 615
Bbv12I GWGCWC 2 cut(s) 853, 898
BbvI GCAGC 5 cut(s) 60, 88, 374, 596, 1002
BccI CCATC 5 cut(s) 523, 727, 796, 928, 943
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 767
BciVI GTATCC 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 3 cut(s) 470, 678, 846
BfmI CTRYAG 2 cut(s) 74, 435
BfuAI ACCTGC 1 cut(s) 874
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 5 cut(s) 74, 77, 363, 585, 1016
BlsI GCNGC 5 cut(s) 75, 78, 364, 586, 1017
Bme1390I CCNGG 1 cut(s) 767
Bme18I GGWCC 4 cut(s) 85, 182, 503, 1048
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 5 cut(s) 85, 182, 503, 974, 1048
BmiI GGNNCC 4 cut(s) 86, 87, 183, 423
BmrFI CCNGG 1 cut(s) 767
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 4 cut(s) 14, 539, 655, 994
BmuI ACTGGG 1 cut(s) 413
BpiI GAAGAC 2 cut(s) 50, 615
BsaAI YACGTR 1 cut(s) 688
BsaHI GRCGYC 2 cut(s) 174, 738
BsaJI CCNNGG 2 cut(s) 417, 486
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 159, 487
Bse118I RCCGGY 1 cut(s) 976
Bse1I ACTGG 4 cut(s) 157, 408, 610, 619
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 2 cut(s) 417, 486
BseGI GGATG 4 cut(s) 496, 530, 697, 883
BseLI CCNNNNNNNGG 3 cut(s) 94, 159, 487
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 4 cut(s) 157, 408, 610, 619
BseRI GAGGAG 2 cut(s) 389, 843
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 5 cut(s) 60, 88, 374, 596, 1002
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 3 cut(s) 28, 770, 976
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 853, 898
BsiSI CCGG 1 cut(s) 977
BslFI GGGAC 4 cut(s) 98, 464, 710, 725
BslI CCNNNNNNNGG 3 cut(s) 94, 159, 487
BsmAI GTCTC 1 cut(s) 835
BsmBI CGTCTC 1 cut(s) 835
BsmFI GGGAC 4 cut(s) 98, 464, 710, 725
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 3 cut(s) 28, 770, 976
Bsp1286I GDGCHC 2 cut(s) 853, 898
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 2 cut(s) 202, 241
BspANI GGCC 3 cut(s) 28, 770, 976
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 4 cut(s) 86, 87, 183, 423
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 976
BsrI ACTGG 4 cut(s) 157, 408, 610, 619
BssAI RCCGGY 1 cut(s) 976
BssECI CCNNGG 2 cut(s) 417, 486
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 2 cut(s) 174, 738
BssT1I CCWWGG 2 cut(s) 417, 486
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 4 cut(s) 70, 439, 503, 715
Bst6I CTCTTC 1 cut(s) 838
BstACI GRCGYC 2 cut(s) 174, 738
BstBAI YACGTR 1 cut(s) 688
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 4 cut(s) 496, 530, 697, 883
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 765
BstSFI CTRYAG 2 cut(s) 74, 435
BstSLI GKGCMC 1 cut(s) 898
BstV1I GCAGC 5 cut(s) 60, 88, 374, 596, 1002
BstV2I GAAGAC 2 cut(s) 50, 615
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 3 cut(s) 28, 770, 976
BtgI CCRYGG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 4 cut(s) 496, 530, 697, 883
BtsIMutI CAGTG 2 cut(s) 164, 846
BveI ACCTGC 1 cut(s) 874
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 976
Cfr13I GGNCC 5 cut(s) 85, 182, 503, 974, 1048
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 4 cut(s) 235, 487, 560, 1045
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 838
EarI CTCTTC 1 cut(s) 838
Eco130I CCWWGG 2 cut(s) 417, 486
Eco47I GGWCC 4 cut(s) 85, 182, 503, 1048
EcoO109I RGGNCCY 2 cut(s) 85, 182
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 417, 486
ErhI CCWWGG 2 cut(s) 417, 486
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 4 cut(s) 238, 490, 563, 1048
FalI AAGNNNNNCTT 6 cut(s) 73, 105, 285, 317, 1047, 1079
FaqI GGGAC 4 cut(s) 98, 464, 710, 725
FatI CATG 4 cut(s) 234, 486, 559, 1044
FblI GTMKAC 1 cut(s) 877
Fnu4HI GCNGC 5 cut(s) 74, 77, 363, 585, 1016
FokI GGATG 4 cut(s) 503, 517, 684, 870
Fsp4HI GCNGC 5 cut(s) 74, 77, 363, 585, 1016
FspBI CTAG 3 cut(s) 470, 678, 846
GluI GCNGC 5 cut(s) 74, 77, 363, 585, 1016
GsaI CCCAGC 1 cut(s) 214
HaeIII GGCC 3 cut(s) 28, 770, 976
HapII CCGG 1 cut(s) 977
Hin1I GRCGYC 2 cut(s) 174, 738
Hin1II CATG 4 cut(s) 238, 490, 563, 1048
HincII GTYRAC 3 cut(s) 525, 571, 1042
HindII GTYRAC 3 cut(s) 525, 571, 1042
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 5 cut(s) 31, 163, 746, 874, 943
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 1 cut(s) 977
HphI GGTGA 3 cut(s) 34, 118, 349
Hpy166II GTNNAC 5 cut(s) 525, 571, 878, 896, 1042
Hpy188I TCNGA 2 cut(s) 942, 1001
Hpy188III TCNNGA 4 cut(s) 35, 235, 551, 1025
Hpy8I GTNNAC 5 cut(s) 525, 571, 878, 896, 1042
Hpy99I CGWCG 2 cut(s) 179, 197
HpyAV CCTTC 6 cut(s) 13, 46, 75, 139, 675, 738
HpyCH4III ACNGT 4 cut(s) 70, 439, 503, 715
HpyCH4IV ACGT 4 cut(s) 123, 174, 687, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 4 cut(s) 123, 174, 687, 738
Hsp92I GRCGYC 2 cut(s) 174, 738
Hsp92II CATG 4 cut(s) 238, 490, 563, 1048
KflI GGGWCCC 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 5 cut(s) 60, 88, 374, 596, 1002
LweI GCATC 4 cut(s) 14, 539, 655, 994
MaeI CTAG 3 cut(s) 470, 678, 846
MaeII ACGT 4 cut(s) 123, 174, 687, 738
MaeIII GTNAC 2 cut(s) 124, 601
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 55, 615, 825
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 853, 898
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 2 cut(s) 256, 1034
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 3 cut(s) 172, 883, 937
Mox20I TGGCCA 1 cut(s) 770
MscI TGGCCA 1 cut(s) 770
MseI TTAA 3 cut(s) 570, 984, 1065
MslI CAYNNNNRTG 3 cut(s) 53, 233, 888
Msp20I TGGCCA 1 cut(s) 770
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 977
MspR9I CCNGG 1 cut(s) 767
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 1 cut(s) 668
NcoI CCATGG 1 cut(s) 486
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 238, 490, 563, 1048
NlaIV GGNNCC 4 cut(s) 86, 87, 183, 423
NmuCI GTSAC 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 53
PagI TCATGA 1 cut(s) 234
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 31, 746
PflFI GACNNNGTC 1 cut(s) 1046
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 5 cut(s) 75, 78, 364, 586, 1017
PleI GAGTC 3 cut(s) 171, 882, 937
PpsI GAGTC 3 cut(s) 171, 882, 937
Ppu21I YACGTR 1 cut(s) 688
PpuMI RGGWCCY 2 cut(s) 85, 182
PshBI ATTAAT 1 cut(s) 984
PsiI TTATAA 1 cut(s) 357
Psp5II RGGWCCY 2 cut(s) 85, 182
Psp6I CCWGG 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 86, 87, 183, 423
PspPI GGNCC 5 cut(s) 85, 182, 503, 974, 1048
PspPPI RGGWCCY 2 cut(s) 85, 182
PstI CTGCAG 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 1046
PvuII CAGCTG 1 cut(s) 365
RseI CAYNNNNRTG 3 cut(s) 53, 233, 888
SaqAI TTAA 3 cut(s) 570, 984, 1065
SatI GCNGC 5 cut(s) 74, 77, 363, 585, 1016
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 5 cut(s) 85, 182, 503, 974, 1048
SchI GAGTC 3 cut(s) 172, 883, 937
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 2 cut(s) 853, 898
SfaNI GCATC 4 cut(s) 14, 539, 655, 994
SfcI CTRYAG 2 cut(s) 74, 435
SinI GGWCC 4 cut(s) 85, 182, 503, 1048
SmiMI CAYNNNNRTG 3 cut(s) 53, 233, 888
Sse9I AATT 2 cut(s) 256, 1034
SsiI CCGC 2 cut(s) 202, 241
SspMI CTAG 3 cut(s) 470, 678, 846
StyD4I CCNGG 1 cut(s) 765
StyI CCWWGG 2 cut(s) 417, 486
TaaI ACNGT 4 cut(s) 70, 439, 503, 715
TaiI ACGT 4 cut(s) 126, 177, 690, 741
TaqI TCGA 3 cut(s) 141, 177, 319
TasI AATT 2 cut(s) 256, 1034
TfiI GAWTC 2 cut(s) 31, 746
Tru1I TTAA 3 cut(s) 570, 984, 1065
Tru9I TTAA 3 cut(s) 570, 984, 1065
TscAI CASTG 2 cut(s) 164, 846
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 73, 76, 362, 584, 1015
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 217, 251, 825
TspGWI ACGGA 2 cut(s) 294, 876
TspRI CASTG 2 cut(s) 164, 846
Tth111I GACNNNGTC 1 cut(s) 1046
Van91I CCANNNNNTGG 1 cut(s) 159
VneI GTGCAC 1 cut(s) 894
VpaK11BI GGWCC 4 cut(s) 85, 182, 503, 1048
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 877
XspI CTAG 3 cut(s) 470, 678, 846
ZraI GACGTC 2 cut(s) 175, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.