MD14G1031700.v1.1

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0002391
Physical Location & Seq
Forward (+)
2816631 .. 2824624
7994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1031700.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGTCTCAGACGGGGAAATTGATGCCAAATCTCGATCAGCAGAGCACCAAAGTGCTCAATCTCACGGTGCTGCAGAGAATGGATCCCTTCATCGAAGAGATTCTGATTACGGCCGCCCACGTCACCTTCTACGAATTCAACATCGAGAGCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTTGTTAAAAGGAATACTCAACCGCGTTTCCAGTTCATCGTTATGAATCGGCGCAATACTGATAACCTAGTGGAGAATATCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTATTGTATAGAAATGCATCCCAAGAAGTTAACGGCATTTGGTTTTATAATGCACGCGAATGTGAGGAAGTTGCAAATCTCTTTACTAGGATCCTGAATGCATACTCAAAGGTTCCACCCAAGTCCAAAGTAGCTTCAAGCAAAAGTGAGTTTGAGGAGCTTGAAGCAGTCCCATCCATGTTGGTCATGGAAGGGCCGTTGGAGCCATCATTGAATGCCCCTACTGCCACTGAGGCGCCTGAAGATTCTTCCTTTATAAGCTACCTGGCAGCTATGAATATTGGAAATAATGCTTCAAATGCAACAAATTCAAGACTGCCCTATCAGTCTACTGGAACTGTTCCCAAGCCTTCTTATGCACCCAGTGCCGTTTCACCCCCTTCACCAACTCCACAAATACCAACCCATTCCCATTCAGTCCCATCTACACCAACCCCCCCACATGGCTCCTCTGATCAAACCACCAGCAACAATCGGGTTGCTAATCTTATAAAGCCCTCTTCTTTCTTCCCTCTCCCTGTTTCCTCACCTCCTTTGGTCATACCACCTACCTCTTCATCTGTGCCACCTGCTGCTGCACTTCATCCACCCCTGAATCTGCAACGCCCTTATGGCACCCCAATGCTTCAACCCTTTCCACCACCAACGCCCCCACCATCTTTAACTCCCAATTCTGCTCCTCCTGCGCCCAGTGATGGGCCTCTTATTAGCAGAGAAAAAGTTCGAGAAGCACTTGTAATGCTTGTTCAGGACGATCAATTCATCGACATGTTATACCAAGCATTGCTGAAAGTGCACCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

371

Amino Acids

40.75

Weight (kDa)

5.55

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 18 - 131 2.9e-46 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 354, 563, 797
AarI CACCTGC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 883
AccB1I GGYRCC 2 cut(s) 541, 920
AccI GTMKAC 1 cut(s) 635
AccII CGCG 2 cut(s) 214, 363
AciI CCGC 2 cut(s) 114, 212
AclWI GGATC 4 cut(s) 77, 90, 391, 404
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 2 cut(s) 134, 613
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 542
AdeI CACNNNGTG 1 cut(s) 671
AfiI CCNNNNNNNGG 3 cut(s) 749, 1001, 1002
AflIII ACRYGT 1 cut(s) 1074
AgsI TTSAA 9 cut(s) 139, 176, 296, 444, 470, 520, 603, 618, 935
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 570
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 4 cut(s) 440, 466, 567, 578
AluI AGCT 4 cut(s) 440, 466, 567, 578
Alw21I GWGCWC 3 cut(s) 47, 57, 1104
Alw26I GTCTC 2 cut(s) 9, 186
Alw44I GTGCAC 1 cut(s) 1100
AlwI GGATC 4 cut(s) 77, 90, 391, 404
AoxI GGCC 3 cut(s) 111, 500, 1004
ApaLI GTGCAC 1 cut(s) 1100
ApeKI GCWGC 4 cut(s) 70, 575, 878, 881
ApoI RAATTY 2 cut(s) 134, 613
Asp700I GAANNNNTTC 2 cut(s) 99, 1026
AspLEI GCGC 3 cut(s) 243, 544, 994
AspS9I GGNCC 2 cut(s) 500, 1004
AsuHPI GGTGA 4 cut(s) 115, 672, 681, 825
BaeGI GKGCMC 1 cut(s) 1104
BamHI GGATCC 2 cut(s) 82, 396
BanI GGYRCC 2 cut(s) 541, 920
Bbv12I GWGCWC 3 cut(s) 47, 57, 1104
BbvI GCAGC 4 cut(s) 57, 587, 865, 868
BccI CCATC 5 cut(s) 487, 520, 736, 970, 995
BceAI ACGGC 4 cut(s) 126, 355, 487, 659
BciT130I CCWGG 1 cut(s) 572
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 9, 186
BfaI CTAG 2 cut(s) 257, 393
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 883
BglI GCCNNNNNGGC 2 cut(s) 539, 918
BisI GCNGC 5 cut(s) 71, 114, 576, 879, 882
BlsI GCNGC 5 cut(s) 72, 115, 577, 880, 883
Bme1390I CCNGG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 500, 1004
BmiI GGNNCC 7 cut(s) 84, 398, 420, 510, 543, 754, 922
BmrFI CCNGG 1 cut(s) 572
BmrI ACTGGG 2 cut(s) 663, 990
BmsI GCATC 2 cut(s) 12, 332
BmuI ACTGGG 2 cut(s) 663, 990
BsaHI GRCGYC 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 3 cut(s) 749, 1001, 1002
Bse1I ACTGG 4 cut(s) 220, 643, 669, 996
Bse3DI GCAATG 1 cut(s) 1088
BseBI CCWGG 1 cut(s) 572
BseGI GGATG 4 cut(s) 175, 323, 479, 889
BseLI CCNNNNNNNGG 3 cut(s) 749, 1001, 1002
BseMI GCAATG 1 cut(s) 1088
BseMII CTCAG 2 cut(s) 20, 528
BseNI ACTGG 4 cut(s) 220, 643, 669, 996
BseRI GAGGAG 3 cut(s) 476, 745, 975
BseSI GKGCMC 1 cut(s) 1104
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 4 cut(s) 57, 587, 865, 868
BsgI GTGCAG 1 cut(s) 867
Bsh1236I CGCG 2 cut(s) 214, 363
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 113, 502, 1006
BshNI GGYRCC 2 cut(s) 541, 920
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 47, 57, 1104
BslFI GGGAC 2 cut(s) 461, 710
BslI CCNNNNNNNGG 3 cut(s) 749, 1001, 1002
BsmAI GTCTC 2 cut(s) 9, 186
BsmFI GGGAC 2 cut(s) 461, 710
BsmI GAATGC 2 cut(s) 409, 526
BsnI GGCC 3 cut(s) 113, 502, 1006
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 3 cut(s) 47, 57, 1104
Bsp143I GATC 5 cut(s) 34, 82, 396, 760, 1060
BspACI CCGC 2 cut(s) 114, 212
BspANI GGCC 3 cut(s) 113, 502, 1006
BspCNI CTCAG 2 cut(s) 19, 529
BspFNI CGCG 2 cut(s) 214, 363
BspLI GGNNCC 7 cut(s) 84, 398, 420, 510, 543, 754, 922
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 4 cut(s) 77, 90, 391, 404
BspT107I GGYRCC 2 cut(s) 541, 920
BspTNI GGTCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 1088
BsrI ACTGG 4 cut(s) 220, 643, 669, 996
BssMI GATC 5 cut(s) 34, 82, 396, 760, 1060
BssNI GRCGYC 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 2 cut(s) 67, 646
Bst6I CTCTTC 3 cut(s) 90, 811, 865
BstACI GRCGYC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 6, 537
BstF5I GGATG 4 cut(s) 175, 323, 479, 889
BstFNI CGCG 2 cut(s) 214, 363
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 3 cut(s) 243, 544, 994
BstKTI GATC 5 cut(s) 37, 85, 399, 763, 1063
BstMAI GTCTC 2 cut(s) 9, 186
BstMBI GATC 5 cut(s) 34, 82, 396, 760, 1060
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 8 cut(s) 508, 530, 539, 605, 671, 918, 989, 1099
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 1104
BstUI CGCG 2 cut(s) 214, 363
BstV1I GCAGC 4 cut(s) 57, 587, 865, 868
BstX2I RGATCY 2 cut(s) 82, 396
BstYI RGATCY 2 cut(s) 82, 396
BstZI CGGCCG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 113, 502, 1006
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 4 cut(s) 175, 323, 479, 889
BtsIMutI CAGTG 3 cut(s) 534, 676, 1003
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 3 cut(s) 243, 544, 994
Cfr13I GGNCC 2 cut(s) 500, 1004
CviAII CATG 5 cut(s) 484, 493, 749, 1075, 1110
DdeI CTNAG 2 cut(s) 6, 537
DinI GGCGCC 1 cut(s) 543
DpnI GATC 5 cut(s) 36, 84, 398, 762, 1062
DpnII GATC 5 cut(s) 34, 82, 396, 760, 1060
DraIII CACNNNGTG 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 90, 811, 865
EarI CTCTTC 3 cut(s) 90, 811, 865
EclXI CGGCCG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 186
Eco52I CGGCCG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 570
EcoT22I ATGCAT 2 cut(s) 325, 409
EgeI GGCGCC 1 cut(s) 543
EheI GGCGCC 1 cut(s) 543
FaeI CATG 5 cut(s) 487, 496, 752, 1078, 1113
FaqI GGGAC 2 cut(s) 461, 710
FatI CATG 5 cut(s) 483, 492, 748, 1074, 1109
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 635
Fnu4HI GCNGC 5 cut(s) 71, 114, 576, 879, 882
FokI GGATG 4 cut(s) 182, 310, 466, 876
Fsp4HI GCNGC 5 cut(s) 71, 114, 576, 879, 882
FspBI CTAG 2 cut(s) 257, 393
GlaI GCGC 3 cut(s) 242, 543, 993
GluI GCNGC 5 cut(s) 71, 114, 576, 879, 882
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 3 cut(s) 113, 502, 1006
HhaI GCGC 3 cut(s) 243, 544, 994
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 5 cut(s) 487, 496, 752, 1078, 1113
Hin6I GCGC 3 cut(s) 241, 542, 992
HinP1I GCGC 3 cut(s) 241, 542, 992
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 5 cut(s) 100, 160, 235, 551, 901
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 4 cut(s) 115, 672, 681, 825
Hpy166II GTNNAC 3 cut(s) 337, 636, 1102
Hpy188I TCNGA 3 cut(s) 9, 105, 760
Hpy188III TCNNGA 6 cut(s) 32, 145, 400, 618, 1031, 1055
Hpy8I GTNNAC 3 cut(s) 337, 636, 1102
HpyAV CCTTC 6 cut(s) 97, 136, 170, 491, 666, 696
HpyCH4III ACNGT 2 cut(s) 67, 646
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 8 cut(s) 508, 530, 539, 605, 671, 918, 989, 1099
HpyF3I CTNAG 2 cut(s) 6, 537
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 5 cut(s) 487, 496, 752, 1078, 1113
HspAI GCGC 3 cut(s) 241, 542, 992
KasI GGCGCC 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 5 cut(s) 34, 82, 396, 760, 1060
LmnI GCTCC 4 cut(s) 463, 508, 758, 988
Lsp1109I GCAGC 4 cut(s) 57, 587, 865, 868
LweI GCATC 2 cut(s) 12, 332
MaeI CTAG 2 cut(s) 257, 393
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 121
MalI GATC 5 cut(s) 36, 84, 398, 762, 1062
MboI GATC 5 cut(s) 34, 82, 396, 760, 1060
MboII GAAGA 6 cut(s) 107, 546, 560, 798, 805, 852
MflI RGATCY 2 cut(s) 82, 396
MhlI GDGCHC 3 cut(s) 47, 57, 1104
MluCI AATT 5 cut(s) 17, 134, 613, 976, 1064
Mly113I GGCGCC 1 cut(s) 542
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 486
Mph1103I ATGCAT 2 cut(s) 325, 409
MroXI GAANNNNTTC 2 cut(s) 99, 1026
MseI TTAA 3 cut(s) 195, 336, 968
MslI CAYNNNNRTG 5 cut(s) 50, 230, 364, 926, 1073
MspR9I CCNGG 1 cut(s) 572
Mva1269I GAATGC 2 cut(s) 409, 526
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 2 cut(s) 214, 363
MwoI GCNNNNNNNGC 8 cut(s) 508, 530, 539, 605, 671, 918, 989, 1099
NarI GGCGCC 1 cut(s) 542
NdeII GATC 5 cut(s) 34, 82, 396, 760, 1060
NlaIII CATG 5 cut(s) 487, 496, 752, 1078, 1113
NlaIV GGNNCC 7 cut(s) 84, 398, 420, 510, 543, 754, 922
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 2 cut(s) 325, 409
NspI RCATGY 1 cut(s) 1078
OliI CACNNNNGTG 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 883
PciI ACATGT 1 cut(s) 1074
PctI GAATGC 2 cut(s) 409, 526
PdmI GAANNNNTTC 2 cut(s) 99, 1026
PfeI GAWTC 4 cut(s) 100, 235, 551, 901
PkrI GCNGC 5 cut(s) 72, 115, 577, 880, 883
PleI GAGTC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 168
PscI ACATGT 1 cut(s) 1074
PsiI TTATAA 3 cut(s) 354, 563, 797
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 7 cut(s) 84, 398, 420, 510, 543, 754, 922
PspPI GGNCC 2 cut(s) 500, 1004
PsrI GAACNNNNNNTAC 2 cut(s) 1035, 1067
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 2 cut(s) 82, 396
RseI CAYNNNNRTG 5 cut(s) 50, 230, 364, 926, 1073
SaqAI TTAA 3 cut(s) 195, 336, 968
SatI GCNGC 5 cut(s) 71, 114, 576, 879, 882
Sau3AI GATC 5 cut(s) 34, 82, 396, 760, 1060
Sau96I GGNCC 2 cut(s) 500, 1004
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 3 cut(s) 47, 57, 1104
SfaNI GCATC 2 cut(s) 12, 332
SfcI CTRYAG 1 cut(s) 71
SfoI GGCGCC 1 cut(s) 543
SmiMI CAYNNNNRTG 5 cut(s) 50, 230, 364, 926, 1073
Sse9I AATT 5 cut(s) 17, 134, 613, 976, 1064
SsiI CCGC 2 cut(s) 114, 212
SspDI GGCGCC 1 cut(s) 541
SspI AATATT 1 cut(s) 586
SspMI CTAG 2 cut(s) 257, 393
StyD4I CCNGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 67, 646
TaiI ACGT 1 cut(s) 123
TaqI TCGA 5 cut(s) 33, 93, 144, 1030, 1071
TasI AATT 5 cut(s) 17, 134, 613, 976, 1064
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 4 cut(s) 100, 235, 551, 901
Tru1I TTAA 3 cut(s) 195, 336, 968
Tru9I TTAA 3 cut(s) 195, 336, 968
TscAI CASTG 3 cut(s) 541, 676, 1003
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 4 cut(s) 70, 575, 878, 881
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 8 cut(s) 79, 214, 248, 303, 596, 852, 878, 1057
TspRI CASTG 3 cut(s) 541, 676, 1003
VneI GTGCAC 1 cut(s) 1100
XapI RAATTY 2 cut(s) 134, 613
XceI RCATGY 1 cut(s) 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 635
XmnI GAANNNNTTC 2 cut(s) 99, 1026
XspI CTAG 2 cut(s) 257, 393
Zsp2I ATGCAT 2 cut(s) 325, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.