Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

41828461 .. 41832116

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGTCAATTCGTTTTTCAAAATACAGTAAACTTTTCATTTGTTTCTATCTTATGTTTTCCTATGTCCAGGATACTTGGTGCATATTCCAAGGTGCCTCAAAAGTCAACAGTATCAACTACAAAGAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGGATGTTATGGATGGTCCTTTAGAGCCATCATCATCAACTGCCTCGAATATCGCAGATGCTCCTGATGACCATGCCTTTGTTAACTTCTTTAGTGCAGCTTCACATACAGCAGTTGCGGGACGGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTAGGCTTTGCTCCTTCCACTATTTCTAACATGCACATATCATCTCCTCCACAGTTATCAACTGCGCCTTCAGTCCCTTTCCTTGACGTCCCTGAATCCCACAGCAATACCAACCTGGCCACTAGTCTTGTAAAGCCTCTTCGTCATTTTTTTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTTCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCGACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCACTTATTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTGCTTGTTCAGGATAATCAGTTCGTTGACATGGTCCATCTAGCACTCCTTAAAGCACACCATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

236

Amino Acids

25.54

Weight (kDa)

6.48

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	414
Acc36I	ACCTGC	2 cut(s)	502, 559
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	505
AciI	CCGC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	20, 146, 491, 594
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	68, 438
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AoxI	GGCC	2 cut(s)	441, 602
ApeKI	GCWGC	2 cut(s)	257, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	176, 602, 676
AvaII	GGWCC	2 cut(s)	176, 676
BaeGI	GKGCMC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	269, 630
BccI	CCATC	5 cut(s)	163, 167, 196, 571, 687
BciT130I	CCWGG	2 cut(s)	70, 440
BciVI	GTATCC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	2 cut(s)	447, 683
BfmI	CTRYAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	502, 559
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	258, 644
BlsI	GCNGC	2 cut(s)	259, 645
Bme1390I	CCNGG	2 cut(s)	70, 440
Bme18I	GGWCC	2 cut(s)	176, 676
BmgT120I	GGNCC	3 cut(s)	176, 602, 676
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	70, 440
BmsI	GCATC	3 cut(s)	208, 328, 622
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	621, 653
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	90, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	70, 440
BseDI	CCNNGG	2 cut(s)	90, 159
BseGI	GGATG	3 cut(s)	155, 169, 178
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	360, 471
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	269, 630
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	443, 604
BshNI	GGYRCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	4 cut(s)	137, 294, 383, 398
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	4 cut(s)	137, 294, 383, 398
BsnI	GGCC	2 cut(s)	443, 604
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	443, 604
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	2 cut(s)	502, 559
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	90, 159
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	90, 159
Bst2UI	CCWGG	2 cut(s)	70, 440
Bst4CI	ACNGT	3 cut(s)	28, 112, 378
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	155, 169, 178
BstHHI	GCGC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	70, 440
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	68, 438
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	269, 630
BstV2I	GAAGAC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	443, 604
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	155, 169, 178
BveI	ACCTGC	2 cut(s)	502, 559
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	176, 602, 676
CseI	GACGC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	4 cut(s)	160, 233, 355, 673
CviJI	RGCY	8 cut(s)	187, 260, 287, 330, 443, 460, 604, 643
CviKI_1	RGCY	8 cut(s)	187, 260, 287, 330, 443, 460, 604, 643
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	90, 159
Eco47I	GGWCC	2 cut(s)	176, 676
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	68, 438
EcoT14I	CCWWGG	2 cut(s)	90, 159
ErhI	CCWWGG	2 cut(s)	90, 159
FaeI	CATG	4 cut(s)	163, 236, 358, 676
FaqI	GGGAC	4 cut(s)	137, 294, 383, 398
FatI	CATG	4 cut(s)	159, 232, 354, 672
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	258, 644
FokI	GGATG	3 cut(s)	142, 176, 185
Fsp4HI	GCNGC	2 cut(s)	258, 644
FspBI	CTAG	2 cut(s)	447, 683
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	258, 644
HaeIII	GGCC	2 cut(s)	443, 604
HapII	CCGG	1 cut(s)	640
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	163, 236, 358, 676
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	3 cut(s)	108, 244, 670
HindII	GTYRAC	3 cut(s)	108, 244, 670
HinfI	GANTC	3 cut(s)	4, 419, 502
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	640
Hpy166II	GTNNAC	5 cut(s)	31, 108, 244, 506, 670
Hpy188I	TCNGA	1 cut(s)	629
Hpy188III	TCNNGA	2 cut(s)	224, 653
Hpy8I	GTNNAC	5 cut(s)	31, 108, 244, 506, 670
HpyAV	CCTTC	2 cut(s)	348, 402
HpyCH4III	ACNGT	3 cut(s)	28, 112, 378
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	83, 257, 319, 358, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	163, 236, 358, 676
HspAI	GCGC	1 cut(s)	389
KspAI	GTTAAC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	226, 340, 484
Lsp1109I	GCAGC	2 cut(s)	269, 630
LweI	GCATC	3 cut(s)	208, 328, 622
MaeI	CTAG	2 cut(s)	447, 683
MaeII	ACGT	1 cut(s)	411
MboII	GAAGA	2 cut(s)	288, 455
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	13, 511
MnlI	CCTC	7 cut(s)	108, 130, 214, 381, 471, 492, 567
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	243, 693
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	2 cut(s)	70, 440
MvaI	CCWGG	2 cut(s)	70, 440
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	517
NlaIII	CATG	4 cut(s)	163, 236, 358, 676
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	259, 645
PleI	GAGTC	2 cut(s)	12, 510
PpsI	GAGTC	2 cut(s)	12, 510
Psp6I	CCWGG	2 cut(s)	68, 438
PspGI	CCWGG	2 cut(s)	68, 438
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	176, 602, 676
PsyI	GACNNNGTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	243, 693
SatI	GCNGC	2 cut(s)	258, 644
Sau96I	GGNCC	3 cut(s)	176, 602, 676
SchI	GAGTC	2 cut(s)	13, 511
ScrFI	CCNGG	2 cut(s)	70, 440
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	96, 262, 414, 441, 496, 541, 553
SfaNI	GCATC	3 cut(s)	208, 328, 622
SfcI	CTRYAG	1 cut(s)	506
SinI	GGWCC	2 cut(s)	176, 676
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	447, 683
StyD4I	CCNGG	2 cut(s)	68, 438
StyI	CCWWGG	2 cut(s)	90, 159
TaaI	ACNGT	3 cut(s)	28, 112, 378
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	206, 559
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	243, 693
Tru9I	TTAA	2 cut(s)	243, 693
TseI	GCWGC	2 cut(s)	257, 643
TspDTI	ATGAA	2 cut(s)	27, 696
Tth111I	GACNNNGTC	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	176, 676
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	505
XspI	CTAG	2 cut(s)	447, 683
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.