MD03G1149600.v1.1

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002391
Physical Location & Seq
Forward (+)
16642214 .. 16647489
5276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1149600.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGTCCCAGAACGGGAAATTGACGCCGAACCTGGACCAGCAGAGCACGAAGCTTCTGAATCTGACGGTTCTGCAGCGAATCGACCCCTCCGTCGAGGAAATTCTCATCACCTCCACTCACGTCACCTTCTACGAGTTCAACACTGACCTTAGCGAATGGAGTCGCAAGGACGTCGAAGGATCGCTCTTCGTGGTCAAGAGGAATGCGCAACCTCGGTTTCAGTTCATTGTGATGAACCGGCGGAATAGTGAAAATTTGGTGGAGGATCTCTTGGGAGATTTTGAATTCGAAGTCCAACATCCATATCTATTGTATCGAAATGCGGCTCGAGAGGTCAATGGTATTTGGTTCTACAATCCAAGTGAATGTGAGGAGGTGGCAAATATGTTTAACAGGATTCTTAGTGCATATTCCAAGGTACCTCAAAACTCAATGGTATCACCAACAAAGAGTGAGTTTGAGGAACTGGAAGCAGTCCCAAGCATGGTTATTATGGATGGTCCTTTGGAGCCATCGTCATCAACTGCCTCTCATGTCACAGACATTCCGGATGATCCGGCTTTTGTGAACTTCTTCAGTACGGCTATGACTATCATGAATTCTTCAACTACAGCAATTACCGGACAGCCTTACCAATCATCTTCGACAACCTATCTACCTTCTCATCCATTCGGTGTTGCACCTTCAAGTATTCCTGGCATGCAAATTCCATGTGCTCCACTGCTATCATCGACAACTTTATCCCCTTTCGTTGACCTCCCTGAATCCCATAACACCACCAACTTGGCCAGTAATCTTGTAAAGCCATCTTTTTTTGTTCATCCTTCCTCTTCAGCAACAACGATGCCAGCTGTCACTGCATCAAGCCGTGCTGCTTCTCTTCTTCACCCTGCTGTAAGTGTGCAACGTCCATATGGTGCTCCTTTGTTACAACCTTTTCCACCGCCAGCCCCTCCACCATCTCTCACAGCTGCTTCTTTCCCTCCTAACTATGGGCCACTTAATAGAGAGAAAGTACGAAATGCACTCATGCTGCTTGTACAGGATAATCAATTCATCGACATGGTATACGGAGCACTCCAGAAGGCACACCACTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

367

Amino Acids

40.34

Weight (kDa)

5.26

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 17 - 131 8.8e-46 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AatII GACGTC 1 cut(s) 174
Acc16I TGCGCA 1 cut(s) 207
Acc65I GGTACC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 1068
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 3 cut(s) 241, 323, 944
AclWI GGATC 3 cut(s) 187, 273, 548
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 5 cut(s) 99, 253, 284, 598, 705
AcuI CTGAAG 2 cut(s) 559, 816
AcyI GRCGYC 2 cut(s) 23, 171
AfaI GTAC 4 cut(s) 420, 580, 1017, 1041
AfiI CCNNNNNNNGG 3 cut(s) 12, 484, 992
AgsI TTSAA 4 cut(s) 139, 284, 606, 687
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 30, 694
AluBI AGCT 3 cut(s) 52, 851, 971
AluI AGCT 3 cut(s) 52, 851, 971
Alw21I GWGCWC 4 cut(s) 47, 718, 922, 1078
AlwI GGATC 3 cut(s) 187, 273, 548
Ama87I CYCGRG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 2 cut(s) 786, 995
ApeKI GCWGC 4 cut(s) 73, 872, 971, 1033
ApoI RAATTY 5 cut(s) 99, 253, 284, 598, 705
Asp700I GAANNNNTTC 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 418
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 34, 500, 995
AsuHPI GGTGA 4 cut(s) 100, 115, 432, 878
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 34, 500
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 1 cut(s) 418
Bbv12I GWGCWC 4 cut(s) 47, 718, 922, 1078
BbvI GCAGC 4 cut(s) 85, 859, 958, 1020
BccI CCATC 4 cut(s) 491, 520, 814, 967
BceAI ACGGC 2 cut(s) 597, 852
BcgI CGANNNNNNTGC 3 cut(s) 154, 188, 1077
BciT130I CCWGG 2 cut(s) 32, 696
BfmI CTRYAG 2 cut(s) 71, 609
BisI GCNGC 5 cut(s) 74, 324, 873, 972, 1034
BlsI GCNGC 5 cut(s) 75, 325, 874, 973, 1035
Bme1390I CCNGG 2 cut(s) 32, 696
Bme18I GGWCC 2 cut(s) 34, 500
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 34, 500, 995
BmiI GGNNCC 2 cut(s) 420, 510
BmrFI CCNGG 2 cut(s) 32, 696
BmsI GCATC 2 cut(s) 834, 869
BpmI CTGGAG 1 cut(s) 1064
Bpu10I CCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 288
BsaHI GRCGYC 2 cut(s) 23, 171
BsaJI CCNNGG 2 cut(s) 212, 414
BsaWI WCCGGW 2 cut(s) 547, 620
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 484, 992
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 471, 789
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 2 cut(s) 32, 696
BseDI CCNNGG 2 cut(s) 212, 414
BseGI GGATG 5 cut(s) 298, 502, 556, 664, 820
BseLI CCNNNNNNNGG 3 cut(s) 12, 484, 992
BseNI ACTGG 2 cut(s) 471, 789
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 4 cut(s) 85, 859, 958, 1020
BshFI GGCC 2 cut(s) 788, 997
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 4 cut(s) 47, 718, 922, 1078
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 4 cut(s) 238, 548, 557, 621
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 3 cut(s) 12, 484, 992
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 788, 997
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 4 cut(s) 47, 718, 922, 1078
Bsp13I TCCGGA 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 1039
Bsp143I GATC 3 cut(s) 179, 265, 553
BspACI CCGC 3 cut(s) 241, 323, 944
BspANI GGCC 2 cut(s) 788, 997
BspEI TCCGGA 1 cut(s) 547
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 420, 510
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 187, 273, 548
BspQI GCTCTTC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 1039
BsrI ACTGG 2 cut(s) 471, 789
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 212, 414
BssMI GATC 3 cut(s) 179, 265, 553
BssNAI GTATAC 1 cut(s) 1069
BssNI GRCGYC 2 cut(s) 23, 171
BssT1I CCWWGG 1 cut(s) 414
Bst1107I GTATAC 1 cut(s) 1069
Bst2UI CCWGG 2 cut(s) 32, 696
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 191, 835, 885
BstACI GRCGYC 2 cut(s) 23, 171
BstAUI TGTACA 1 cut(s) 1039
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 701, 849, 948
BstDEI CTNAG 2 cut(s) 149, 401
BstF5I GGATG 5 cut(s) 298, 502, 556, 664, 820
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 182, 268, 556
BstMBI GATC 3 cut(s) 179, 265, 553
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNI CCWGG 2 cut(s) 32, 696
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 30, 694
BstSFI CTRYAG 2 cut(s) 71, 609
BstV1I GCAGC 4 cut(s) 85, 859, 958, 1020
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 1069
BsuRI GGCC 2 cut(s) 788, 997
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 5 cut(s) 298, 502, 556, 664, 820
BtsI GCAGTG 2 cut(s) 719, 855
BtsIMutI CAGTG 3 cut(s) 141, 719, 855
Cac8I GCNNGC 3 cut(s) 701, 849, 948
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 3 cut(s) 34, 500, 995
CseI GACGC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 419, 579, 1016, 1040
CviAII CATG 7 cut(s) 484, 533, 595, 700, 711, 1030, 1063
CviQI GTAC 4 cut(s) 419, 579, 1016, 1040
DdeI CTNAG 2 cut(s) 149, 401
DpnI GATC 3 cut(s) 181, 267, 555
DpnII GATC 3 cut(s) 179, 265, 553
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 191, 835, 885
EarI CTCTTC 3 cut(s) 191, 835, 885
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 34, 500
Eco57I CTGAAG 2 cut(s) 559, 816
Eco88I CYCGRG 1 cut(s) 327
EcoRI GAATTC 2 cut(s) 284, 598
EcoRII CCWGG 2 cut(s) 30, 694
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 7 cut(s) 487, 536, 598, 703, 714, 1033, 1066
FaqI GGGAC 1 cut(s) 461
FatI CATG 7 cut(s) 483, 532, 594, 699, 710, 1029, 1062
FauNDI CATATG 1 cut(s) 913
FblI GTMKAC 1 cut(s) 1068
Fnu4HI GCNGC 5 cut(s) 74, 324, 873, 972, 1034
FokI GGATG 5 cut(s) 285, 509, 563, 651, 807
Fsp4HI GCNGC 5 cut(s) 74, 324, 873, 972, 1034
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 5 cut(s) 74, 324, 873, 972, 1034
GsuI CTGGAG 1 cut(s) 1064
HaeIII GGCC 2 cut(s) 788, 997
HapII CCGG 4 cut(s) 238, 548, 557, 621
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 2 cut(s) 23, 171
Hin1II CATG 7 cut(s) 487, 536, 598, 703, 714, 1033, 1066
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 5 cut(s) 58, 78, 160, 397, 764
HpaII CCGG 4 cut(s) 238, 548, 557, 621
HphI GGTGA 4 cut(s) 100, 115, 432, 878
Hpy166II GTNNAC 3 cut(s) 568, 754, 1069
Hpy188I TCNGA 2 cut(s) 57, 63
Hpy188III TCNNGA 5 cut(s) 196, 329, 548, 595, 1081
Hpy8I GTNNAC 3 cut(s) 568, 754, 1069
Hpy99I CGWCG 2 cut(s) 95, 176
HpyAV CCTTC 6 cut(s) 136, 170, 669, 693, 834, 1078
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 3 cut(s) 120, 171, 907
HpyCH4V TGCA 7 cut(s) 73, 407, 680, 703, 860, 904, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 2 cut(s) 149, 401
HpySE526I ACGT 3 cut(s) 120, 171, 907
Hsp92I GRCGYC 2 cut(s) 23, 171
Hsp92II CATG 7 cut(s) 487, 536, 598, 703, 714, 1033, 1066
HspAI GCGC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 547
KpnI GGTACC 1 cut(s) 422
Kzo9I GATC 3 cut(s) 179, 265, 553
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 4 cut(s) 508, 721, 925, 1073
Lsp1109I GCAGC 4 cut(s) 85, 859, 958, 1020
LweI GCATC 2 cut(s) 834, 869
MaeII ACGT 3 cut(s) 120, 171, 907
MaeIII GTNAC 4 cut(s) 121, 535, 853, 927
MalI GATC 3 cut(s) 181, 267, 555
MboI GATC 3 cut(s) 179, 265, 553
MboII GAAGA 7 cut(s) 178, 565, 594, 633, 822, 872, 875
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 4 cut(s) 47, 718, 922, 1078
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 8 cut(s) 17, 99, 253, 284, 598, 615, 705, 1052
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 788
MroI TCCGGA 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 788
MseI TTAA 2 cut(s) 390, 1002
MslI CAYNNNNRTG 2 cut(s) 230, 1061
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 851, 971
MspI CCGG 4 cut(s) 238, 548, 557, 621
MspR9I CCNGG 2 cut(s) 32, 696
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 32, 696
MwoI GCNNNNNNNGC 1 cut(s) 857
NdeI CATATG 1 cut(s) 913
NdeII GATC 3 cut(s) 179, 265, 553
NlaIII CATG 7 cut(s) 487, 536, 598, 703, 714, 1033, 1066
NlaIV GGNNCC 2 cut(s) 420, 510
NmuCI GTSAC 3 cut(s) 121, 535, 853
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 703
NspV TTCGAA 1 cut(s) 288
PaeI GCATGC 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 327
PagI TCATGA 1 cut(s) 594
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 4 cut(s) 58, 78, 397, 764
PkrI GCNGC 5 cut(s) 75, 325, 874, 973, 1035
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 30, 694
PspGI CCWGG 2 cut(s) 30, 694
PspN4I GGNNCC 2 cut(s) 420, 510
PspPI GGNCC 3 cut(s) 34, 500, 995
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 851, 971
RsaI GTAC 4 cut(s) 420, 580, 1017, 1041
RsaNI GTAC 4 cut(s) 419, 579, 1016, 1040
RseI CAYNNNNRTG 2 cut(s) 230, 1061
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 390, 1002
SatI GCNGC 5 cut(s) 74, 324, 873, 972, 1034
Sau3AI GATC 3 cut(s) 179, 265, 553
Sau96I GGNCC 3 cut(s) 34, 500, 995
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 32, 696
SduI GDGCHC 4 cut(s) 47, 718, 922, 1078
SfaNI GCATC 2 cut(s) 834, 869
SfcI CTRYAG 2 cut(s) 71, 609
Sfr274I CTCGAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 2 cut(s) 34, 500
SlaI CTCGAG 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 230, 1061
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SphI GCATGC 1 cut(s) 703
Sse9I AATT 8 cut(s) 17, 99, 253, 284, 598, 615, 705, 1052
SsiI CCGC 3 cut(s) 241, 323, 944
StyD4I CCNGG 2 cut(s) 30, 694
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 3 cut(s) 123, 174, 910
TaqI TCGA 9 cut(s) 81, 93, 174, 288, 316, 328, 644, 731, 1059
TasI AATT 8 cut(s) 17, 99, 253, 284, 598, 615, 705, 1052
TatI WGTACW 1 cut(s) 1039
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 4 cut(s) 58, 78, 397, 764
Tru1I TTAA 2 cut(s) 390, 1002
Tru9I TTAA 2 cut(s) 390, 1002
TscAI CASTG 3 cut(s) 148, 726, 862
TseFI GTSAC 3 cut(s) 121, 535, 853
TseI GCWGC 4 cut(s) 73, 872, 971, 1033
Tsp45I GTSAC 3 cut(s) 121, 535, 853
TspDTI ATGAA 5 cut(s) 214, 248, 611, 809, 1045
TspGWI ACGGA 2 cut(s) 79, 1086
TspRI CASTG 3 cut(s) 148, 726, 862
VpaK11BI GGWCC 2 cut(s) 34, 500
XapI RAATTY 5 cut(s) 99, 253, 284, 598, 705
XceI RCATGY 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 1068
XmnI GAANNNNTTC 1 cut(s) 572
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.