Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Reverse (-)

39341644 .. 39348115

Gene Structure 6472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATACTATTCCAACAGTTTGCTAGGATTTGGATTAACTGCATTTTATTTATCAATCTATACTTCACACACTGTAAAGGAAGAATAACAATGAGTCAATTCGTTTTTCAAAATACAGTAAACTTTTCATTTGTTTCTATCTTATGTTTTCCTATGTCCAGGATACTTGGTGCATATTCCAAGGTGCCTCAAAAGTCAACGGTATCAACTACAAAGAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGGATGTTATGGATGGTCCTTTAGAGCCATCATCATCAACTGCCTCGAATATCGCAGATGCTCCTGATGACCCTGCCTTTGTTAACTTCTTTAGTGCAGCTTCACATACAGCAGTTGCTGGACAGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTCGGCTTTGCTCCTTCCACTATTTCTAACATGCACATATCATCTCCTCCACAGTTATCAACTGCGCCTTCAGTCCCTTTCCTTGATGTCCCTGAATCCCACAGCAATACCAACCTGGCCACTAGTCTTGTAAAGCCTTCTTCATTTTTTGTTACCCCTCCTTCCCCTGCAACAGTGATTGCACCTGTATCTTCATCAGTGCCTAGCGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTCCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCCACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCACTTATTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTGCTTGTTCAGGATAATCAGTTCGTTGACATGGTCCATCTAGCACTCCTTAAAGCACACCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

284

Amino Acids

30.65

Weight (kDa)

6.42

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	2 cut(s)	646, 703
AccB1I	GGYRCC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	649
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	468
AfeI	AGCGCT	1 cut(s)	622
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	110, 236, 635, 738
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	158, 528
AloI	GAACNNNNNNTCC	2 cut(s)	791, 823
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw21I	GWGCWC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	622
AoxI	GGCC	2 cut(s)	531, 746
ApeKI	GCWGC	2 cut(s)	347, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	2 cut(s)	481, 623
AspS9I	GGNCC	3 cut(s)	266, 746, 820
AvaII	GGWCC	2 cut(s)	266, 820
BaeGI	GKGCMC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	2 cut(s)	359, 774
BccI	CCATC	5 cut(s)	253, 257, 286, 715, 831
BciT130I	CCWGG	2 cut(s)	160, 530
BciVI	GTATCC	1 cut(s)	156
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	4 cut(s)	24, 537, 618, 827
BfmI	CTRYAG	1 cut(s)	650
BfoI	RGCGCY	1 cut(s)	624
BfuAI	ACCTGC	2 cut(s)	646, 703
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	348, 788
BlsI	GCNGC	2 cut(s)	349, 789
Bme1390I	CCNGG	2 cut(s)	160, 530
Bme18I	GGWCC	2 cut(s)	266, 820
BmgT120I	GGNCC	3 cut(s)	266, 746, 820
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	160, 530
BmsI	GCATC	3 cut(s)	298, 418, 766
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BsaJI	CCNNGG	2 cut(s)	180, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	160, 530
BseDI	CCNNGG	2 cut(s)	180, 249
BseGI	GGATG	3 cut(s)	245, 259, 268
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	450, 615
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	359, 774
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	533, 748
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	784
BslFI	GGGAC	3 cut(s)	227, 473, 488
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	3 cut(s)	227, 473, 488
BsnI	GGCC	2 cut(s)	533, 748
Bsp1286I	GDGCHC	2 cut(s)	405, 670
Bsp19I	CCATGG	1 cut(s)	249
BspANI	GGCC	2 cut(s)	533, 748
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	2 cut(s)	646, 703
BspT107I	GGYRCC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	180, 249
BssT1I	CCWWGG	2 cut(s)	180, 249
Bst2UI	CCWGG	2 cut(s)	160, 530
Bst4CI	ACNGT	6 cut(s)	18, 74, 118, 202, 468, 589
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	245, 259, 268
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	481, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	160, 530
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	158, 528
BstSFI	CTRYAG	1 cut(s)	650
BstSLI	GKGCMC	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	359, 774
BstV2I	GAAGAC	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	533, 748
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	3 cut(s)	245, 259, 268
BtsIMutI	CAGTG	3 cut(s)	70, 594, 618
BveI	ACCTGC	2 cut(s)	646, 703
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	2 cut(s)	481, 623
Cfr13I	GGNCC	3 cut(s)	266, 746, 820
CseI	GACGC	1 cut(s)	644
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	3 cut(s)	250, 445, 817
CviJI	RGCY	8 cut(s)	277, 350, 377, 420, 533, 550, 748, 787
CviKI_1	RGCY	8 cut(s)	277, 350, 377, 420, 533, 550, 748, 787
EaeI	YGGCCR	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	180, 249
Eco47I	GGWCC	2 cut(s)	266, 820
Eco47III	AGCGCT	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	158, 528
EcoT14I	CCWWGG	2 cut(s)	180, 249
ErhI	CCWWGG	2 cut(s)	180, 249
FaeI	CATG	3 cut(s)	253, 448, 820
FaqI	GGGAC	3 cut(s)	227, 473, 488
FatI	CATG	3 cut(s)	249, 444, 816
FauNDI	CATATG	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	348, 788
FokI	GGATG	3 cut(s)	232, 266, 275
Fsp4HI	GCNGC	2 cut(s)	348, 788
FspBI	CTAG	4 cut(s)	24, 537, 618, 827
GlaI	GCGC	2 cut(s)	480, 622
GluI	GCNGC	2 cut(s)	348, 788
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	533, 748
HapII	CCGG	1 cut(s)	784
HgaI	GACGC	1 cut(s)	644
HhaI	GCGC	2 cut(s)	481, 623
Hin1II	CATG	3 cut(s)	253, 448, 820
Hin6I	GCGC	2 cut(s)	479, 621
HinP1I	GCGC	2 cut(s)	479, 621
HincII	GTYRAC	3 cut(s)	198, 334, 814
HindII	GTYRAC	3 cut(s)	198, 334, 814
HinfI	GANTC	3 cut(s)	94, 509, 646
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	784
Hpy166II	GTNNAC	5 cut(s)	121, 198, 334, 650, 814
Hpy188I	TCNGA	1 cut(s)	773
Hpy188III	TCNNGA	2 cut(s)	314, 797
Hpy8I	GTNNAC	5 cut(s)	121, 198, 334, 650, 814
HpyAV	CCTTC	4 cut(s)	438, 492, 561, 585
HpyCH4III	ACNGT	6 cut(s)	18, 74, 118, 202, 468, 589
HpyCH4V	TGCA	8 cut(s)	42, 173, 347, 409, 448, 584, 596, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	253, 448, 820
HspAI	GCGC	2 cut(s)	479, 621
KspAI	GTTAAC	1 cut(s)	334
LmnI	GCTCC	4 cut(s)	316, 430, 628, 673
Lsp1109I	GCAGC	2 cut(s)	359, 774
LweI	GCATC	3 cut(s)	298, 418, 766
MaeI	CTAG	4 cut(s)	24, 537, 618, 827
MaeIII	GTNAC	1 cut(s)	565
MboII	GAAGA	4 cut(s)	93, 378, 546, 597
MhlI	GDGCHC	2 cut(s)	405, 670
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	103, 655
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	198, 220, 304, 471, 582, 636, 711
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	3 cut(s)	36, 333, 837
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	2 cut(s)	160, 530
MvaI	CCWGG	2 cut(s)	160, 530
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	661
NlaIII	CATG	3 cut(s)	253, 448, 820
NlaIV	GGNNCC	1 cut(s)	186
NspI	RCATGY	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	818
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	349, 789
PleI	GAGTC	2 cut(s)	102, 654
PpsI	GAGTC	2 cut(s)	102, 654
Psp6I	CCWGG	2 cut(s)	158, 528
PspGI	CCWGG	2 cut(s)	158, 528
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	266, 746, 820
PstNI	CAGNNNCTG	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	818
SaqAI	TTAA	3 cut(s)	36, 333, 837
SatI	GCNGC	2 cut(s)	348, 788
Sau96I	GGNCC	3 cut(s)	266, 746, 820
SchI	GAGTC	2 cut(s)	103, 655
ScrFI	CCNGG	2 cut(s)	160, 530
SduI	GDGCHC	2 cut(s)	405, 670
SetI	ASST	7 cut(s)	186, 352, 531, 601, 640, 685, 697
SfaNI	GCATC	3 cut(s)	298, 418, 766
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	266, 820
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	4 cut(s)	24, 537, 618, 827
StyD4I	CCNGG	2 cut(s)	158, 528
StyI	CCWWGG	2 cut(s)	180, 249
TaaI	ACNGT	6 cut(s)	18, 74, 118, 202, 468, 589
TaqI	TCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	36, 333, 837
Tru9I	TTAA	3 cut(s)	36, 333, 837
TscAI	CASTG	3 cut(s)	77, 594, 618
TseI	GCWGC	2 cut(s)	347, 787
TspDTI	ATGAA	3 cut(s)	117, 546, 597
TspRI	CASTG	3 cut(s)	77, 594, 618
Tth111I	GACNNNGTC	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	266, 820
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	649
XspI	CTAG	4 cut(s)	24, 537, 618, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.