Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Reverse (-)

44229259 .. 44237428

Gene Structure 8170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG308000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTCAATTCGTTTTGCAAAATACAGTAAACTTTTCATTTGTTTCTATCTTATGTTTTCCTATGTCCAGGATACTTGGTGCATATTCCAAGGTGCCTCAAAAGTCAACGGTATCAACTACAAAGAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGGATGTTATGGATGGTCCTTTAGAGCCATCATCATCAACTGCCTCGAATATCGCAGATGCTCCTGATGACCATGCCTTTGTTAACTTCTTTAGTGCAGCTTCACATACAGCAGTTGCTGGACAGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTCGGCTTTGCTCCTTCCACTATTTCTAACATGCACATATCATCTCCTCCACAGTTATCAACTGCGCCTTCAGTCCCTTTCCTTGACGTCCCTGAATCCCACAGCAATACCAACCTGGCCACTAGTCTTGTAAAGCCTTCGTCATTTTTTGTTACCCCTCCTTCCCCTGCAACAGTGATTGCACCTGTATCTTCATCAGTGCCTAGTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTCCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCCACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCACTTATTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTGCTTGTTCAGGATAATCAGTTCGTTGACATGGTCCATCTAGCACTCCTTAAAGCACACCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

254

Amino Acids

26.97

Weight (kDa)

5.84

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
AatII	GACGTC	1 cut(s)	414
Acc36I	ACCTGC	2 cut(s)	556, 613
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	146, 545, 648
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	68, 438
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	2 cut(s)	535, 580
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	441, 656
ApeKI	GCWGC	2 cut(s)	257, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	176, 656, 730
AvaII	GGWCC	2 cut(s)	176, 730
BaeGI	GKGCMC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	535, 580
BbvI	GCAGC	2 cut(s)	269, 684
BccI	CCATC	5 cut(s)	163, 167, 196, 625, 741
BciT130I	CCWGG	2 cut(s)	70, 440
BciVI	GTATCC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	3 cut(s)	447, 528, 737
BfmI	CTRYAG	1 cut(s)	560
BfuAI	ACCTGC	2 cut(s)	556, 613
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	258, 698
BlsI	GCNGC	2 cut(s)	259, 699
Bme1390I	CCNGG	2 cut(s)	70, 440
Bme18I	GGWCC	2 cut(s)	176, 730
BmgT120I	GGNCC	3 cut(s)	176, 656, 730
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	70, 440
BmsI	GCATC	3 cut(s)	208, 328, 676
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	90, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	70, 440
BseDI	CCNNGG	2 cut(s)	90, 159
BseGI	GGATG	3 cut(s)	155, 169, 178
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	360, 525
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	269, 684
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	443, 658
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	535, 580
BsiSI	CCGG	1 cut(s)	694
BslFI	GGGAC	3 cut(s)	137, 383, 398
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	137, 383, 398
BsnI	GGCC	2 cut(s)	443, 658
Bsp1286I	GDGCHC	3 cut(s)	315, 535, 580
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	2 cut(s)	443, 658
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	2 cut(s)	556, 613
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	90, 159
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	90, 159
Bst2UI	CCWGG	2 cut(s)	70, 440
Bst4CI	ACNGT	4 cut(s)	28, 112, 378, 499
BstACI	GRCGYC	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	155, 169, 178
BstHHI	GCGC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	70, 440
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	68, 438
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	269, 684
BstV2I	GAAGAC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	443, 658
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	155, 169, 178
BtsIMutI	CAGTG	2 cut(s)	504, 528
BveI	ACCTGC	2 cut(s)	556, 613
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	176, 656, 730
CseI	GACGC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	4 cut(s)	160, 233, 355, 727
CviJI	RGCY	8 cut(s)	187, 260, 287, 330, 443, 460, 658, 697
CviKI_1	RGCY	8 cut(s)	187, 260, 287, 330, 443, 460, 658, 697
EaeI	YGGCCR	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	90, 159
Eco47I	GGWCC	2 cut(s)	176, 730
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	68, 438
EcoT14I	CCWWGG	2 cut(s)	90, 159
ErhI	CCWWGG	2 cut(s)	90, 159
FaeI	CATG	4 cut(s)	163, 236, 358, 730
FaqI	GGGAC	3 cut(s)	137, 383, 398
FatI	CATG	4 cut(s)	159, 232, 354, 726
FauNDI	CATATG	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	258, 698
FokI	GGATG	3 cut(s)	142, 176, 185
Fsp4HI	GCNGC	2 cut(s)	258, 698
FspBI	CTAG	3 cut(s)	447, 528, 737
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	258, 698
HaeIII	GGCC	2 cut(s)	443, 658
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	163, 236, 358, 730
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	3 cut(s)	108, 244, 724
HindII	GTYRAC	3 cut(s)	108, 244, 724
HinfI	GANTC	3 cut(s)	4, 419, 556
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	694
Hpy166II	GTNNAC	5 cut(s)	31, 108, 244, 560, 724
Hpy188I	TCNGA	1 cut(s)	683
Hpy188III	TCNNGA	2 cut(s)	224, 707
Hpy8I	GTNNAC	5 cut(s)	31, 108, 244, 560, 724
HpyAV	CCTTC	4 cut(s)	348, 402, 471, 495
HpyCH4III	ACNGT	4 cut(s)	28, 112, 378, 499
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	8 cut(s)	19, 83, 257, 319, 358, 494, 506, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	163, 236, 358, 730
HspAI	GCGC	1 cut(s)	389
KspAI	GTTAAC	1 cut(s)	244
LmnI	GCTCC	4 cut(s)	226, 340, 538, 583
Lsp1109I	GCAGC	2 cut(s)	269, 684
LweI	GCATC	3 cut(s)	208, 328, 676
MaeI	CTAG	3 cut(s)	447, 528, 737
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	475
MboII	GAAGA	2 cut(s)	288, 507
MhlI	GDGCHC	3 cut(s)	315, 535, 580
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	13, 565
MnlI	CCTC	7 cut(s)	108, 130, 214, 381, 492, 546, 621
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	243, 747
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	2 cut(s)	70, 440
MvaI	CCWGG	2 cut(s)	70, 440
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	571
NlaIII	CATG	4 cut(s)	163, 236, 358, 730
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	259, 699
PleI	GAGTC	2 cut(s)	12, 564
PpsI	GAGTC	2 cut(s)	12, 564
Psp6I	CCWGG	2 cut(s)	68, 438
PspGI	CCWGG	2 cut(s)	68, 438
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	176, 656, 730
PstNI	CAGNNNCTG	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	243, 747
SatI	GCNGC	2 cut(s)	258, 698
Sau96I	GGNCC	3 cut(s)	176, 656, 730
SchI	GAGTC	2 cut(s)	13, 565
ScrFI	CCNGG	2 cut(s)	70, 440
SduI	GDGCHC	3 cut(s)	315, 535, 580
SetI	ASST	8 cut(s)	96, 262, 414, 441, 511, 550, 595, 607
SfaNI	GCATC	3 cut(s)	208, 328, 676
SfcI	CTRYAG	1 cut(s)	560
SinI	GGWCC	2 cut(s)	176, 730
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	1 cut(s)	8
SspMI	CTAG	3 cut(s)	447, 528, 737
StyD4I	CCNGG	2 cut(s)	68, 438
StyI	CCWWGG	2 cut(s)	90, 159
TaaI	ACNGT	4 cut(s)	28, 112, 378, 499
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	243, 747
Tru9I	TTAA	2 cut(s)	243, 747
TscAI	CASTG	2 cut(s)	504, 528
TseI	GCWGC	2 cut(s)	257, 697
TspDTI	ATGAA	2 cut(s)	27, 507
TspRI	CASTG	2 cut(s)	504, 528
Tth111I	GACNNNGTC	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	176, 730
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	3 cut(s)	447, 528, 737
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.