Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Forward (+)

9495851 .. 9500331

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10350.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCGCAGAACGGGAAATTGACGCCGAACCTGGACCAGCAGAGCACGAAGCTTCTGAATCTGACGGTTCTGCAGCGAATCGACCCCTCCGTCGAGGAAATTCTCATTACCTCCACTCACGTCACCTTCTACGAGTTCAACACTGATCTCAGCGAATGGAGTCGCAAGGACGTCGAAGGATCGCTCTTCGTGGTCAAGAGGAATGTGCAACCTCGGTTTCAGTTCATTGTGATGAACCGGCGGAATAGTGCAGAAAATTTGGTGGAGGATCTCTTGGGAGATTTTGAATTCGAAGTCCAACATCCATATCTATTGTATCGAAATGCGGCTCGAGAGGTCAATGGTATTTGGTTCTACAATCCAAGTGAATGTGAGGAGGTGGCAAATATGTTTAACAGGATTCTTAGTGCATATTCCAAGGTACCTCAAAACTCAATGGTATCACCAACAAAGAGTGAGTTTGAGGAACTGGAAGCAGTCCCAAGCATGGTTATTATGGATGGTCCTTTGGAGCCATCGTCATCAACTGCCTCTCATGTCACAGATGTTCCGGATGATCCGGCTTTTGTGAACTTCTTCAGTACGGCTATGACTGTCGTGAATTCTTCAACTACAGCAATTACTGGACAGCCTTACCAATCATCTTCGACAGCCTATCTACCTTCTCATCCATTCGGTGTTGCACCTTCAAGTATTCCTGGCATGCGAATTCCATGTGCTCCACTGACAACTTTATCCCCTTTCGTTAACCTCCCTGAATCCCACAACACCACCAACTTGGCCAGTAATCTTGTAAAGCCATCTTTTTTTGTTCATCCTTCCTCTTCAGCAACAACGATGCCAGCTGTCACTGCATCAAGCCGTGCTGCTTCTCTTCTTCACCCTGCTGTAAGTGTGCAACGTCCATATGGTGCTCCTTTGTTACAGCCTTTTCCACCGCCAGCCCCTCCACCATCTCTCACTGCTGCTTCTTTCCCTCCTAACTATGGGCCACTTAATAGAGATGAAGTACGAAATGCACTCATGCTGCTTGTACAGGATAATCAATTCATCGACATGGTATATGGAGCACTCCAGAAGGCACACCACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

OTU

Protein Analysis

365

Amino Acids

40.08

Weight (kDa)

5.26

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AatII	GACGTC	1 cut(s)	174
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	3 cut(s)	241, 326, 938
AclWI	GGATC	3 cut(s)	187, 276, 551
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	5 cut(s)	99, 256, 287, 601, 708
AcuI	CTGAAG	2 cut(s)	562, 810
AcyI	GRCGYC	2 cut(s)	23, 171
AfaI	GTAC	4 cut(s)	423, 583, 1011, 1035
AfiI	CCNNNNNNNGG	2 cut(s)	487, 986
AgsI	TTSAA	4 cut(s)	139, 287, 609, 690
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	30, 697
AluBI	AGCT	2 cut(s)	52, 845
AluI	AGCT	2 cut(s)	52, 845
Alw21I	GWGCWC	4 cut(s)	47, 721, 916, 1072
AlwI	GGATC	3 cut(s)	187, 276, 551
Ama87I	CYCGRG	1 cut(s)	330
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	780, 989
ApeKI	GCWGC	4 cut(s)	73, 866, 965, 1027
ApoI	RAATTY	5 cut(s)	99, 256, 287, 601, 708
Asp700I	GAANNNNTTC	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	34, 503, 989
AsuHPI	GGTGA	3 cut(s)	115, 435, 872
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	34, 503
BalI	TGGCCA	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	421
Bbv12I	GWGCWC	4 cut(s)	47, 721, 916, 1072
BbvI	GCAGC	4 cut(s)	85, 853, 952, 1014
BccI	CCATC	4 cut(s)	494, 523, 808, 961
BceAI	ACGGC	2 cut(s)	600, 846
BcgI	CGANNNNNNTGC	3 cut(s)	154, 188, 1071
BciT130I	CCWGG	2 cut(s)	32, 699
BfmI	CTRYAG	2 cut(s)	71, 612
BisI	GCNGC	5 cut(s)	74, 327, 867, 966, 1028
BlsI	GCNGC	5 cut(s)	75, 328, 868, 967, 1029
Bme1390I	CCNGG	2 cut(s)	32, 699
Bme18I	GGWCC	2 cut(s)	34, 503
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	34, 503, 989
BmiI	GGNNCC	2 cut(s)	423, 513
BmrFI	CCNGG	2 cut(s)	32, 699
BmsI	GCATC	2 cut(s)	828, 863
BpmI	CTGGAG	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	23, 171
BsaJI	CCNNGG	2 cut(s)	212, 417
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 986
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	474, 628, 783
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	32, 699
BseDI	CCNNGG	2 cut(s)	212, 417
BseGI	GGATG	5 cut(s)	301, 505, 559, 667, 814
BseLI	CCNNNNNNNGG	2 cut(s)	487, 986
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	3 cut(s)	474, 628, 783
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	85, 853, 952, 1014
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	782, 991
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	4 cut(s)	47, 721, 916, 1072
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	238, 551, 560
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	487, 986
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	782, 991
BsoBI	CYCGRG	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	4 cut(s)	47, 721, 916, 1072
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	145, 179, 268, 556
BspACI	CCGC	3 cut(s)	241, 326, 938
BspANI	GGCC	2 cut(s)	782, 991
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	423, 513
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	3 cut(s)	187, 276, 551
BspQI	GCTCTTC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	1033
BsrI	ACTGG	3 cut(s)	474, 628, 783
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	212, 417
BssMI	GATC	4 cut(s)	145, 179, 268, 556
BssNI	GRCGYC	2 cut(s)	23, 171
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	32, 699
Bst4CI	ACNGT	2 cut(s)	67, 595
Bst6I	CTCTTC	3 cut(s)	191, 829, 879
BstACI	GRCGYC	2 cut(s)	23, 171
BstAUI	TGTACA	1 cut(s)	1033
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	704, 843, 942
BstDEI	CTNAG	2 cut(s)	149, 404
BstF5I	GGATG	5 cut(s)	301, 505, 559, 667, 814
BstKTI	GATC	4 cut(s)	148, 182, 271, 559
BstMBI	GATC	4 cut(s)	145, 179, 268, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	851
BstNI	CCWGG	2 cut(s)	32, 699
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	30, 697
BstSFI	CTRYAG	2 cut(s)	71, 612
BstV1I	GCAGC	4 cut(s)	85, 853, 952, 1014
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	782, 991
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	5 cut(s)	301, 505, 559, 667, 814
BtsI	GCAGTG	2 cut(s)	849, 960
BtsIMutI	CAGTG	4 cut(s)	141, 722, 849, 960
Cac8I	GCNNGC	3 cut(s)	704, 843, 942
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	34, 503, 989
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	422, 582, 1010, 1034
CviAII	CATG	6 cut(s)	487, 536, 703, 714, 1024, 1057
CviQI	GTAC	4 cut(s)	422, 582, 1010, 1034
DdeI	CTNAG	2 cut(s)	149, 404
DpnI	GATC	4 cut(s)	147, 181, 270, 558
DpnII	GATC	4 cut(s)	145, 179, 268, 556
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	3 cut(s)	191, 829, 879
EarI	CTCTTC	3 cut(s)	191, 829, 879
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	34, 503
Eco57I	CTGAAG	2 cut(s)	562, 810
Eco88I	CYCGRG	1 cut(s)	330
EcoRI	GAATTC	3 cut(s)	287, 601, 708
EcoRII	CCWGG	2 cut(s)	30, 697
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	6 cut(s)	490, 539, 706, 717, 1027, 1060
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	6 cut(s)	486, 535, 702, 713, 1023, 1056
FauNDI	CATATG	1 cut(s)	907
Fnu4HI	GCNGC	5 cut(s)	74, 327, 867, 966, 1028
FokI	GGATG	5 cut(s)	288, 512, 566, 654, 801
Fsp4HI	GCNGC	5 cut(s)	74, 327, 867, 966, 1028
GluI	GCNGC	5 cut(s)	74, 327, 867, 966, 1028
GsuI	CTGGAG	1 cut(s)	1058
HaeIII	GGCC	2 cut(s)	782, 991
HapII	CCGG	3 cut(s)	238, 551, 560
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	2 cut(s)	23, 171
Hin1II	CATG	6 cut(s)	490, 539, 706, 717, 1027, 1060
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	5 cut(s)	58, 78, 160, 400, 758
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	238, 551, 560
HphI	GGTGA	3 cut(s)	115, 435, 872
Hpy166II	GTNNAC	2 cut(s)	571, 748
Hpy188I	TCNGA	2 cut(s)	57, 63
Hpy188III	TCNNGA	5 cut(s)	196, 332, 551, 598, 1075
Hpy8I	GTNNAC	2 cut(s)	571, 748
Hpy99I	CGWCG	2 cut(s)	95, 176
HpyAV	CCTTC	6 cut(s)	136, 170, 672, 696, 828, 1072
HpyCH4III	ACNGT	2 cut(s)	67, 595
HpyCH4IV	ACGT	3 cut(s)	120, 171, 901
HpyCH4V	TGCA	8 cut(s)	73, 208, 251, 410, 683, 854, 898, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	851
HpyF3I	CTNAG	2 cut(s)	149, 404
HpySE526I	ACGT	3 cut(s)	120, 171, 901
Hsp92I	GRCGYC	2 cut(s)	23, 171
Hsp92II	CATG	6 cut(s)	490, 539, 706, 717, 1027, 1060
Kpn2I	TCCGGA	1 cut(s)	550
KpnI	GGTACC	1 cut(s)	425
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	145, 179, 268, 556
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	4 cut(s)	511, 724, 919, 1067
Lsp1109I	GCAGC	4 cut(s)	85, 853, 952, 1014
LweI	GCATC	2 cut(s)	828, 863
MaeII	ACGT	3 cut(s)	120, 171, 901
MaeIII	GTNAC	4 cut(s)	121, 538, 847, 921
MalI	GATC	4 cut(s)	147, 181, 270, 558
MboI	GATC	4 cut(s)	145, 179, 268, 556
MboII	GAAGA	7 cut(s)	178, 568, 597, 636, 816, 866, 869
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	4 cut(s)	47, 721, 916, 1072
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	8 cut(s)	17, 99, 256, 287, 601, 618, 708, 1046
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	322
Mox20I	TGGCCA	1 cut(s)	782
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	3 cut(s)	393, 747, 996
MslI	CAYNNNNRTG	2 cut(s)	230, 1055
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	3 cut(s)	238, 551, 560
MspR9I	CCNGG	2 cut(s)	32, 699
MvaI	CCWGG	2 cut(s)	32, 699
MwoI	GCNNNNNNNGC	1 cut(s)	851
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	4 cut(s)	145, 179, 268, 556
NlaIII	CATG	6 cut(s)	490, 539, 706, 717, 1027, 1060
NlaIV	GGNNCC	2 cut(s)	423, 513
NmuCI	GTSAC	3 cut(s)	121, 538, 847
NspI	RCATGY	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	4 cut(s)	58, 78, 400, 758
PkrI	GCNGC	5 cut(s)	75, 328, 868, 967, 1029
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	30, 697
PspGI	CCWGG	2 cut(s)	30, 697
PspN4I	GGNNCC	2 cut(s)	423, 513
PspPI	GGNCC	3 cut(s)	34, 503, 989
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	4 cut(s)	423, 583, 1011, 1035
RsaNI	GTAC	4 cut(s)	422, 582, 1010, 1034
RseI	CAYNNNNRTG	2 cut(s)	230, 1055
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	393, 747, 996
SatI	GCNGC	5 cut(s)	74, 327, 867, 966, 1028
Sau3AI	GATC	4 cut(s)	145, 179, 268, 556
Sau96I	GGNCC	3 cut(s)	34, 503, 989
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	32, 699
SduI	GDGCHC	4 cut(s)	47, 721, 916, 1072
SfaNI	GCATC	2 cut(s)	828, 863
SfcI	CTRYAG	2 cut(s)	71, 612
Sfr274I	CTCGAG	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	2 cut(s)	34, 503
SlaI	CTCGAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	230, 1055
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	706
Sse9I	AATT	8 cut(s)	17, 99, 256, 287, 601, 618, 708, 1046
SsiI	CCGC	3 cut(s)	241, 326, 938
StyD4I	CCNGG	2 cut(s)	30, 697
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	67, 595
TaiI	ACGT	3 cut(s)	123, 174, 904
TaqI	TCGA	8 cut(s)	81, 93, 174, 291, 319, 331, 647, 1053
TasI	AATT	8 cut(s)	17, 99, 256, 287, 601, 618, 708, 1046
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	4 cut(s)	58, 78, 400, 758
Tru1I	TTAA	3 cut(s)	393, 747, 996
Tru9I	TTAA	3 cut(s)	393, 747, 996
TscAI	CASTG	4 cut(s)	148, 729, 856, 967
TseFI	GTSAC	3 cut(s)	121, 538, 847
TseI	GCWGC	4 cut(s)	73, 866, 965, 1027
Tsp45I	GTSAC	3 cut(s)	121, 538, 847
TspDTI	ATGAA	5 cut(s)	214, 248, 803, 1020, 1039
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	4 cut(s)	148, 729, 856, 967
VpaK11BI	GGWCC	2 cut(s)	34, 503
XapI	RAATTY	5 cut(s)	99, 256, 287, 601, 708
XceI	RCATGY	1 cut(s)	706
XhoI	CTCGAG	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	575
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.