Rh3AG194100

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002391
Physical Location & Seq
Forward (+)
18849888 .. 18854566
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG194100.1

Sequence Viewer

Length: 843 bp
ATGAATCGGCGTAACACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTGTTGTATAGGAATGCAGCTCAGGAAGTTAATGGCATTTGGTTTTATAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTCACTAGGATTCTTAACGCATACTCAAAGGTTCCTCCAAAGTCCAAAGTAGCTTCTAGCAAAAGTGAGTTTGAAGAACTTGAAGCAGTCCCATCGATGTTGGTCATGGAAGGGCCACTGGAGCCATCATTGAATGTCACTACTGCCAGTGAACCCCCTGAAGATTCATCCTTTGTGAACTACTTGGCAGCTATGAATATTGGAGGTAACACTTCAAACATTGCAAATTCAAGACAGCCCTATCCTTCTTCTGGAACTGCTCCTCCGTCTTCCTATGCACCCAACGTCGTTTCATCTCCCGCACCATCCCCACTAGTACCAGCCCTTTCCCTTTCAGCCTCATCTACACAAGCACCTTTGCCCGGTACATCTGATTTAACAACTAGCAGCAGCCGGGTGGCTAATCTTATAAAGCCATCTTCCTTTTTCCCTCTACCTGCTTCCTCATCTTCAGTGATTGTACCTCCCATTTCTTCAGCTGTGCCTGTTCCAACTGCCGGTGCTCTTCATCCTCCTGTGAATTTGCAACGCCCATATGGCACTCCAATGCTTCAACCCTTTCCACCACCAACGCCACCTCCATCTTTAACTCCTAATGCTCCTCCCACTCCCAACGATGGGTCTCATATAAGCAGAGAAAAAGTTCGGGATGCACTTCTGATGCTTGTTCAGGTATTATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

280

Amino Acids

29.9

Weight (kDa)

4.99

Isoelectric Point (pI)

69.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 1 - 54 3.5e-16 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 123, 566
Acc36I ACCTGC 1 cut(s) 601
AciI CCGC 1 cut(s) 456
AcsI RAATTY 2 cut(s) 382, 676
AcuI CTGAAG 3 cut(s) 336, 591, 615
AcvI CACGTG 1 cut(s) 131
AfaI GTAC 3 cut(s) 474, 523, 618
AfiI CCNNNNNNNGG 5 cut(s) 407, 518, 653, 773, 774
AgsI TTSAA 7 cut(s) 65, 230, 239, 289, 372, 387, 710
AhlI ACTAGT 1 cut(s) 469
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 4 cut(s) 95, 209, 347, 635
AluI AGCT 4 cut(s) 95, 209, 347, 635
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 1 cut(s) 783
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 92, 344, 543, 546
ApoI RAATTY 2 cut(s) 382, 676
Asp700I GAANNNNTTC 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 2 cut(s) 519, 551
BbrPI CACGTG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 4 cut(s) 104, 356, 555, 558
BccI CCATC 6 cut(s) 256, 289, 469, 580, 745, 767
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BcnI CCSGG 2 cut(s) 519, 551
BcoDI GTCTC 1 cut(s) 783
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 5 cut(s) 26, 162, 213, 470, 540
BfuAI ACCTGC 1 cut(s) 601
BglI GCCNNNNNGGC 1 cut(s) 693
BisI GCNGC 4 cut(s) 93, 345, 544, 547
BlsI GCNGC 4 cut(s) 94, 346, 545, 548
Bme1390I CCNGG 2 cut(s) 519, 551
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 189, 279
BmrFI CCNGG 2 cut(s) 519, 551
BmsI GCATC 2 cut(s) 796, 807
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 519, 551
Bsa29I ATCGAT 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 783
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 718, 748
Bsc4I CCNNNNNNNGG 5 cut(s) 407, 518, 653, 773, 774
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 279, 303
Bse3DI GCAATG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 251
BseGI GGATG 4 cut(s) 323, 461, 664, 811
BseLI CCNNNNNNNGG 5 cut(s) 407, 518, 653, 773, 774
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 279, 303
BseRI GAGGAG 2 cut(s) 408, 747
BseXI GCAGC 4 cut(s) 104, 356, 555, 558
BshFI GGCC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 3 cut(s) 519, 550, 654
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 5 cut(s) 407, 518, 653, 773, 774
BsmAI GTCTC 1 cut(s) 783
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 271
Bso31I GGTCTC 1 cut(s) 783
Bsp1286I GDGCHC 1 cut(s) 661
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 189, 279
BspMI ACCTGC 1 cut(s) 601
BspQI GCTCTTC 1 cut(s) 666
BspTNI GGTCTC 1 cut(s) 783
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 279, 303
BssAI RCCGGY 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 161, 666
BstBAI YACGTR 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 323, 461, 664, 811
BstMAI GTCTC 1 cut(s) 783
BstMWI GCNNNNNNNGC 2 cut(s) 277, 693
BstSCI CCNGG 2 cut(s) 517, 549
BstV1I GCAGC 4 cut(s) 104, 356, 555, 558
BstV2I GAAGAC 1 cut(s) 417
Bsu15I ATCGAT 1 cut(s) 251
BsuRI GGCC 1 cut(s) 271
BsuTUI ATCGAT 1 cut(s) 251
BtsCI GGATG 4 cut(s) 323, 461, 664, 811
BtsIMutI CAGTG 3 cut(s) 272, 310, 615
BveI ACCTGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 251
Csp6I GTAC 3 cut(s) 473, 522, 617
CviAII CATG 1 cut(s) 262
CviQI GTAC 3 cut(s) 473, 522, 617
DdeI CTNAG 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 161, 666
EarI CTCTTC 2 cut(s) 161, 666
Eco31I GGTCTC 1 cut(s) 783
Eco57I CTGAAG 3 cut(s) 336, 591, 615
Eco72I CACGTG 1 cut(s) 131
FaeI CATG 1 cut(s) 265
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 463
FauNDI CATATG 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 93, 345, 544, 547
FokI GGATG 4 cut(s) 310, 448, 651, 818
Fsp4HI GCNGC 4 cut(s) 93, 345, 544, 547
FspBI CTAG 5 cut(s) 26, 162, 213, 470, 540
GluI GCNGC 4 cut(s) 93, 345, 544, 547
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 271
HapII CCGG 3 cut(s) 519, 550, 654
Hin1II CATG 1 cut(s) 265
HinfI GANTC 4 cut(s) 4, 34, 166, 320
HpaII CCGG 3 cut(s) 519, 550, 654
Hpy166II GTNNAC 2 cut(s) 308, 334
Hpy188I TCNGA 2 cut(s) 529, 816
Hpy188III TCNNGA 4 cut(s) 98, 387, 408, 803
Hpy8I GTNNAC 2 cut(s) 308, 334
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 260, 411
HpyCH4IV ACGT 2 cut(s) 130, 441
HpyCH4V TGCA 6 cut(s) 92, 149, 380, 434, 682, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 693
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 130, 441
Hsp92II CATG 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 3 cut(s) 277, 421, 760
Lsp1109I GCAGC 4 cut(s) 104, 356, 555, 558
LweI GCATC 2 cut(s) 796, 807
MaeI CTAG 5 cut(s) 26, 162, 213, 470, 540
MaeII ACGT 2 cut(s) 130, 441
MaeIII GTNAC 3 cut(s) 11, 292, 362
MboII GAAGA 9 cut(s) 148, 242, 329, 396, 417, 567, 597, 621, 653
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 3 cut(s) 124, 382, 676
MmeI TCCRAC 1 cut(s) 671
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 4 cut(s) 105, 171, 533, 743
MslI CAYNNNNRTG 2 cut(s) 133, 701
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 3 cut(s) 519, 550, 654
MspR9I CCNGG 2 cut(s) 519, 551
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 277, 693
NciI CCSGG 2 cut(s) 519, 551
NdeI CATATG 1 cut(s) 691
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 189, 279
NmuCI GTSAC 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 666
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 4 cut(s) 4, 34, 166, 320
PkrI GCNGC 4 cut(s) 94, 346, 545, 548
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 131
PsiI TTATAA 2 cut(s) 123, 566
PspCI CACGTG 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 189, 279
PspPI GGNCC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 474, 523, 618
RsaNI GTAC 3 cut(s) 473, 522, 617
RseI CAYNNNNRTG 2 cut(s) 133, 701
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 4 cut(s) 105, 171, 533, 743
SatI GCNGC 4 cut(s) 93, 345, 544, 547
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 519, 551
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 2 cut(s) 796, 807
SmiMI CAYNNNNRTG 2 cut(s) 133, 701
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 3 cut(s) 124, 382, 676
SsiI CCGC 1 cut(s) 456
SspI AATATT 1 cut(s) 355
SspMI CTAG 5 cut(s) 26, 162, 213, 470, 540
StyD4I CCNGG 2 cut(s) 517, 549
TaiI ACGT 2 cut(s) 133, 444
TaqI TCGA 1 cut(s) 251
TasI AATT 3 cut(s) 124, 382, 676
TfiI GAWTC 4 cut(s) 4, 34, 166, 320
Tru1I TTAA 4 cut(s) 105, 171, 533, 743
Tru9I TTAA 4 cut(s) 105, 171, 533, 743
TscAI CASTG 3 cut(s) 279, 310, 615
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 92, 344, 543, 546
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 6 cut(s) 17, 72, 312, 365, 438, 653
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 3 cut(s) 279, 310, 615
XapI RAATTY 2 cut(s) 382, 676
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 5 cut(s) 26, 162, 213, 470, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.