RLG00000034405

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002391
Physical Location & Seq
Reverse (-)
42166611 .. 42174139
7529 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034405

Sequence Viewer

Length: 1125 bp
ATGTCGCAGAACGGGAAGCTGATGCCGAATCTGGACCAGCAGAGCACCAAGGTCCTCAACCTCACCGTTCTCCAGCGAAACGACCCTTTCGTCGAGGAAATCCTCATGACTTCAACTCACGTCACCTTCTACAAGTTCGACACTAACACCAGCCAATGGAGTCGCAAGGACGTCGAGGGATCTCTCTTCGTCGTCAAGAGGAACGCGCAGCCTCGCTTTCAGTTTATTGTCATGAATCGCCTCAATACTGAAAATTTGGTGGAGGATCTTTTGGGAGATTTTGAATGTGAAGTCCAGCTTCCTTATCTGTTATATCGAAATGCGGCCCGAGAGGTGAATGGTATTTGGTTCTACAATGCGTCTGAGTGTGAAGAGGTGGCAAATCTTTTCAGCAGGATACTTGGTGCATATTCCAAGGTGCCTCAAAAGTCAACGGTATCAACTACAAAGAGCATCTGCCTATTAACTCGCTCACACACACAAACCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAATTTGCACAATGCAGCAGCTTCACATACAGCGGTTACTGGACAGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTCGGCTTTGCTCCTTCCGCTATTTCTAACATGCACATATCATCTCCTCCACAGTTATCAACTGCGCCTTCAGTCCCTTTCCTTGACATTCCTGAATCCCACAGCAATACCAACCTGGCCACTAATCTTGTAAAGCCTTCTTCATTTTTTGTTACCCCTACTTCCCCTGCAACAGTGATTGCACCTGTATCTTCATCAGTGCCTAGTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTCCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCCACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCAGTTCTTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTGCTTGTTCAGGTTAGTCTCCACACCATTTTTTGTTTCCCCCAATTGATAAGATCTCATGTTTGCCATGGTCTTGAAAATTCATCAAGGGGGAGGAAAGCATTTGTAAATGCATCAGAAACAGTTCATAGTCTTGTGATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

375

Amino Acids

41.12

Weight (kDa)

9.36

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 18 - 131 2.5e-45 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
AasI GACNNNNNNGTC 1 cut(s) 89
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 2 cut(s) 838, 895
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 841
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 323, 554, 624
AclWI GGATC 2 cut(s) 187, 273
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 3 cut(s) 253, 523, 1057
AcuI CTGAAG 1 cut(s) 660
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 5 cut(s) 114, 284, 827, 930, 1055
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 720
AluBI AGCT 3 cut(s) 19, 298, 542
AluI AGCT 3 cut(s) 19, 298, 542
Alw21I GWGCWC 3 cut(s) 47, 817, 862
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 2 cut(s) 187, 273
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 3 cut(s) 324, 723, 938
ApeKI GCWGC 4 cut(s) 208, 536, 539, 979
ApoI RAATTY 3 cut(s) 253, 523, 1057
Asp700I GAANNNNTTC 1 cut(s) 1101
AspLEI GCGC 2 cut(s) 208, 673
AspS9I GGNCC 4 cut(s) 34, 52, 325, 938
AsuHPI GGTGA 3 cut(s) 55, 115, 346
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 34, 52
BaeGI GKGCMC 1 cut(s) 597
BalI TGGCCA 1 cut(s) 725
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 3 cut(s) 47, 817, 862
BbvI GCAGC 4 cut(s) 220, 548, 551, 966
BccI CCATC 1 cut(s) 907
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 722
BciVI GTATCC 1 cut(s) 390
BclI TGATCA 1 cut(s) 1116
BcoDI GTCTC 1 cut(s) 1001
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 842
BfuAI ACCTGC 2 cut(s) 838, 895
BfuI GTATCC 1 cut(s) 390
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 5 cut(s) 209, 324, 537, 540, 980
BlsI GCNGC 5 cut(s) 210, 325, 538, 541, 981
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 2 cut(s) 34, 52
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 4 cut(s) 34, 52, 325, 938
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 722
BmsI GCATC 5 cut(s) 12, 462, 610, 958, 1100
BpiI GAAGAC 1 cut(s) 570
BplI GAGNNNNNCTC 2 cut(s) 957, 989
BpmI CTGGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 48, 414, 1045
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 3 cut(s) 565, 574, 941
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 3 cut(s) 48, 414, 1045
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 3 cut(s) 565, 574, 941
BseRI GAGGAG 2 cut(s) 642, 807
BseSI GKGCMC 1 cut(s) 597
BseXI GCAGC 4 cut(s) 220, 548, 551, 966
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 326, 725, 940
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 3 cut(s) 47, 817, 862
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 976
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 3 cut(s) 326, 725, 940
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 4 cut(s) 47, 597, 817, 862
Bsp143I GATC 4 cut(s) 179, 265, 1031, 1116
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 3 cut(s) 323, 554, 624
BspANI GGCC 3 cut(s) 326, 725, 940
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 2 cut(s) 105, 231
BspLI GGNNCC 1 cut(s) 420
BspMI ACCTGC 2 cut(s) 838, 895
BspPI GGATC 2 cut(s) 187, 273
BspT107I GGYRCC 1 cut(s) 418
BsrI ACTGG 3 cut(s) 565, 574, 941
BssECI CCNNGG 3 cut(s) 48, 414, 1045
BssMI GATC 4 cut(s) 179, 265, 1031, 1116
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 3 cut(s) 48, 414, 1045
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 5 cut(s) 67, 436, 660, 781, 1102
Bst6I CTCTTC 2 cut(s) 191, 366
BstACI GRCGYC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 363, 947
BstDSI CCRYGG 1 cut(s) 1045
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 2 cut(s) 208, 673
BstKTI GATC 4 cut(s) 182, 268, 1034, 1119
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 4 cut(s) 179, 265, 1031, 1116
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 842
BstSLI GKGCMC 1 cut(s) 597
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 4 cut(s) 220, 548, 551, 966
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 3 cut(s) 179, 265, 1031
BstYI RGATCY 3 cut(s) 179, 265, 1031
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 326, 725, 940
BtgI CCRYGG 1 cut(s) 1045
BtrI CACGTC 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 786, 810
BveI ACCTGC 2 cut(s) 838, 895
CciI TCATGA 2 cut(s) 105, 231
CfoI GCGC 2 cut(s) 208, 673
Cfr13I GGNCC 4 cut(s) 34, 52, 325, 938
CseI GACGC 2 cut(s) 348, 836
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 5 cut(s) 106, 232, 637, 1037, 1046
DdeI CTNAG 2 cut(s) 363, 947
DpnI GATC 4 cut(s) 181, 267, 1033, 1118
DpnII GATC 4 cut(s) 179, 265, 1031, 1116
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 2 cut(s) 191, 366
EarI CTCTTC 2 cut(s) 191, 366
Eco130I CCWWGG 3 cut(s) 48, 414, 1045
Eco47I GGWCC 2 cut(s) 34, 52
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 3 cut(s) 48, 414, 1045
EcoT22I ATGCAT 1 cut(s) 1093
ErhI CCWWGG 3 cut(s) 48, 414, 1045
FaeI CATG 5 cut(s) 109, 235, 640, 1040, 1049
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 665
FatI CATG 5 cut(s) 105, 231, 636, 1036, 1045
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 1 cut(s) 1116
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 5 cut(s) 209, 324, 537, 540, 980
Fsp4HI GCNGC 5 cut(s) 209, 324, 537, 540, 980
FspBI CTAG 1 cut(s) 810
GlaI GCGC 2 cut(s) 207, 672
GluI GCNGC 5 cut(s) 209, 324, 537, 540, 980
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 326, 725, 940
HapII CCGG 1 cut(s) 976
HgaI GACGC 2 cut(s) 348, 836
HhaI GCGC 2 cut(s) 208, 673
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 5 cut(s) 109, 235, 640, 1040, 1049
Hin6I GCGC 2 cut(s) 206, 671
HinP1I GCGC 2 cut(s) 206, 671
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 5 cut(s) 28, 160, 235, 701, 838
HpaII CCGG 1 cut(s) 976
HphI GGTGA 3 cut(s) 55, 115, 346
Hpy166II GTNNAC 2 cut(s) 432, 842
Hpy188I TCNGA 3 cut(s) 364, 965, 1096
Hpy188III TCNNGA 6 cut(s) 32, 106, 196, 232, 698, 1052
Hpy8I GTNNAC 2 cut(s) 432, 842
Hpy99I CGWCG 3 cut(s) 95, 176, 194
HpyAV CCTTC 4 cut(s) 136, 630, 684, 753
HpyCH4III ACNGT 5 cut(s) 67, 436, 660, 781, 1102
HpyCH4IV ACGT 2 cut(s) 120, 171
HpyCH4V TGCA 9 cut(s) 407, 529, 536, 601, 640, 776, 788, 971, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 2 cut(s) 363, 947
HpySE526I ACGT 2 cut(s) 120, 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 5 cut(s) 109, 235, 640, 1040, 1049
HspAI GCGC 2 cut(s) 206, 671
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 4 cut(s) 179, 265, 1031, 1116
LmnI GCTCC 3 cut(s) 622, 820, 865
Lsp1109I GCAGC 4 cut(s) 220, 548, 551, 966
LweI GCATC 5 cut(s) 12, 462, 610, 958, 1100
MaeI CTAG 1 cut(s) 810
MaeII ACGT 2 cut(s) 120, 171
MaeIII GTNAC 3 cut(s) 121, 556, 757
MalI GATC 4 cut(s) 181, 267, 1033, 1118
MboI GATC 4 cut(s) 179, 265, 1031, 1116
MboII GAAGA 5 cut(s) 178, 383, 570, 738, 789
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 3 cut(s) 179, 265, 1031
MhlI GDGCHC 4 cut(s) 47, 597, 817, 862
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 4 cut(s) 253, 523, 1022, 1057
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 2 cut(s) 169, 847
Mox20I TGGCCA 1 cut(s) 725
Mph1103I ATGCAT 1 cut(s) 1093
MroXI GAANNNNTTC 1 cut(s) 1101
MscI TGGCCA 1 cut(s) 725
MseI TTAA 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 976
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 623
NcoI CCATGG 1 cut(s) 1045
NdeI CATATG 1 cut(s) 853
NdeII GATC 4 cut(s) 179, 265, 1031, 1116
NlaIII CATG 5 cut(s) 109, 235, 640, 1040, 1049
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 1093
NspI RCATGY 1 cut(s) 640
PagI TCATGA 2 cut(s) 105, 231
PaqCI CACCTGC 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 3 cut(s) 28, 235, 701
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 5 cut(s) 210, 325, 538, 541, 981
PleI GAGTC 2 cut(s) 168, 846
PpsI GAGTC 2 cut(s) 168, 846
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 720
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 4 cut(s) 34, 52, 325, 938
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 3 cut(s) 179, 265, 1031
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 5 cut(s) 209, 324, 537, 540, 980
Sau3AI GATC 4 cut(s) 179, 265, 1031, 1116
Sau96I GGNCC 4 cut(s) 34, 52, 325, 938
SchI GAGTC 2 cut(s) 169, 847
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 4 cut(s) 47, 597, 817, 862
SfaNI GCATC 5 cut(s) 12, 462, 610, 958, 1100
SfcI CTRYAG 1 cut(s) 842
SinI GGWCC 2 cut(s) 34, 52
Sse9I AATT 4 cut(s) 253, 523, 1022, 1057
SsiI CCGC 3 cut(s) 323, 554, 624
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 3 cut(s) 48, 414, 1045
TaaI ACNGT 5 cut(s) 67, 436, 660, 781, 1102
TaiI ACGT 2 cut(s) 123, 174
TaqI TCGA 4 cut(s) 93, 138, 174, 316
TasI AATT 4 cut(s) 253, 523, 1022, 1057
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 28, 235, 701
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 786, 810
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 4 cut(s) 208, 536, 539, 979
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 5 cut(s) 248, 738, 789, 1050, 1094
TspRI CASTG 2 cut(s) 786, 810
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 34, 52
XapI RAATTY 3 cut(s) 253, 523, 1057
XceI RCATGY 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 1 cut(s) 810
ZraI GACGTC 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.