Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002391

Physical Location & Seq

Genomic Coordinates Reverse (-)

39282759 .. 39288153

Gene Structure 5395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTCCTGATGACCCTGCCTTTGTTAACTTCTTTAGTGCAGCTTCACATACAGCAGTTGCTGGACAGGCTTACCAGTCTTCTACAATCTCTGTGCCCTTGCATCAAGTCGGCTTTGCTCCTTCCACTATTTCTAACATGCACATATCATCTCCTCCACAGTTATCAACTGCGCCTTCAGTCCCTTTCCCTGACGTCCCTGAATCCCACCGACCTGGCCACTAGTCTTGTAAAGCCTTCTTCCTTTTTTGTTACCCCTCCTTCCCCTGCAACAGGAATTGCACCTGTATCTTCATCAGTGCCTAGTGCTCCTCTGTTTCAACCTGCTGTGAGTCTACAGCGTCCATATGGTGCTCCTTTGCTACAACCTTTTCCCCCACCTGCCCCTCCACCATCTCTCACTCCTGCTTCTTTTTCCACTTCAAACTATGGGCCACTTATTAGCAGAGATAAAGTCCGAGATGCACTCCGGCTACTTGTTCAGGATAATCAGTTCGTTGACATGGTCCATCTAGCACTCTTTAAAGCACACCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DCP1

Protein Analysis

179

Amino Acids

19.48

Weight (kDa)

9.22

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08370
fragaria_vesca	FvH4_3g25640 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510 FvH4_6g19510
malus_domestica	MD03G1149600.v1.1 MD11G1168500.v1.1 MD12G1031300.v1.1 MD14G1031700.v1.1
prunus_persica	Prupe.6G135600_v2.0.a1 Prupe.6G135600_v2.0.a1 Prupe.7G101100_v2.0.a1
pyrus_communis	pycom03g10350 pycom11g14120 pycom12g02930 pycom14g02860
rosa_chinensis	RchiOBHm_Chr3g0474851 RchiOBHm_Chr5g0045761 RchiOBHm_Chr5g0045791
rosa_laevigata	RLG00000023890 RLG00000034405
rosa_multiflora	Rmu_sc0003677.1_g000002 Rmu_sc0004848.1_g000015 Rmu_sc0011900.1_g000003
rosa_roxburghii	Rroxscaffold_1G00035080 Rroxscaffold_6G00406800
rosa_rugosa	Rorug03G0144600 Rorug05G0227000
rosa_samantha	Rh2BG361200 Rh3AG194100 Rh3BG224000 Rh3CG218900 Rh3DG219900 Rh5AG308000 Rh5BG316800 Rh5CG342700 Rh5CG342800 Rh5DG327100
rosa_wichuraiana	Rw3G017680 Rw5G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	331, 388
AccI	GTMKAC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	320, 423
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	2 cut(s)	310, 355
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	216, 431
ApeKI	GCWGC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	431, 505
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	310, 355
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	400, 516
BciT130I	CCWGG	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	3 cut(s)	222, 303, 512
BfmI	CTRYAG	1 cut(s)	335
BfuAI	ACCTGC	2 cut(s)	331, 388
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	431, 505
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	111, 451
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BsaHI	GRCGYC	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	143, 300
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	218, 433
BsiHKAI	GWGCWC	2 cut(s)	310, 355
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	2 cut(s)	166, 181
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	166, 181
BsnI	GGCC	2 cut(s)	218, 433
Bsp1286I	GDGCHC	3 cut(s)	98, 310, 355
BspANI	GGCC	2 cut(s)	218, 433
BspMI	ACCTGC	2 cut(s)	331, 388
BsrI	ACTGG	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	218, 433
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	2 cut(s)	331, 388
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	431, 505
CseI	GACGC	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	2 cut(s)	138, 502
CviJI	RGCY	7 cut(s)	43, 70, 113, 218, 235, 433, 472
CviKI_1	RGCY	7 cut(s)	43, 70, 113, 218, 235, 433, 472
DraI	TTTAAA	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	141, 505
FaiI	YATR	8 cut(s)	50, 139, 145, 346, 348, 429, 503, 538
FaqI	GGGAC	2 cut(s)	166, 181
FatI	CATG	2 cut(s)	137, 501
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	3 cut(s)	222, 303, 512
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	218, 433
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	141, 505
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	27, 499
HindII	GTYRAC	2 cut(s)	27, 499
HinfI	GANTC	2 cut(s)	202, 331
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	27, 335, 499
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	2 cut(s)	7, 482
Hpy8I	GTNNAC	3 cut(s)	27, 335, 499
HpyAV	CCTTC	4 cut(s)	131, 185, 246, 270
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	6 cut(s)	40, 102, 141, 269, 281, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	141, 505
HspAI	GCGC	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	9, 123, 313, 358
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	111, 451
MaeI	CTAG	3 cut(s)	222, 303, 512
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	3 cut(s)	71, 231, 282
MhlI	GDGCHC	3 cut(s)	98, 310, 355
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	164, 267, 321, 396
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	26, 522
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	346
NlaIII	CATG	2 cut(s)	141, 505
NspI	RCATGY	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	431, 505
PstNI	CAGNNNCTG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	26, 522
SatI	GCNGC	1 cut(s)	41
Sau96I	GGNCC	2 cut(s)	431, 505
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	3 cut(s)	98, 310, 355
SetI	ASST	7 cut(s)	45, 197, 216, 286, 325, 370, 382
SfaNI	GCATC	2 cut(s)	111, 451
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	505
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	1 cut(s)	276
SspMI	CTAG	3 cut(s)	222, 303, 512
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	197
TasI	AATT	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	26, 522
Tru9I	TTAA	2 cut(s)	26, 522
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	3 cut(s)	222, 303, 512
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.