Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

2882491 .. 2884342

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATCAACAAGACCATGGACAGTCTGGAGCTATGAACTATGGCACAAACCCATACCAAACCAACCCGATGAGCACCACTGCTGCTACTGTAGCAGGAGGTGCGGCACAACCAGGCCAGCTGGCGTTCCACCAGATCCATCAGCAGCAGCAGCAGCAACAGCTGGCACAGCAGCTTCAAGCATTTTGGGAGAACCAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGAACCACAGCCTTCCCCTTGCGAGAATCAAGAAAATCATGAAAGCGGATGAAGATGTCCGTATGATCTCGGCTGAGGCGCCTGTCGTGTTTGCAAGGGCCTGTGAGATGTTCATCCTGGAGCTGACACTCAGGTCGTGGAACCACACTGAGGAGAATAAGAGGCGGACGTTGCAGAAGAACGATATTGCTGCTGCTGTGACTAGAACCGATATTTTTGATTTCCTTGTGGATATTGTTCCCCGGGAGGATCTCCGAGATGAAGTCTTGGGAAGTATTCCGAGGGGCACTGTCCCGGAAGCTGCTGCTGCTGGTTACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGAAATCCGGGAATGGTTATGGGTAATCCCGGTGGTGCGTATCCACCTAATCCTTATATGGGTCAACCAATGTGGCAACAACAGGCACCTGACCAACCTGACCAGGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

5.08

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	69 - 143	4e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	80 - 143	1.1e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
AccB1I	GGYRCC	2 cut(s)	307, 667
AciI	CCGC	3 cut(s)	104, 275, 394
AclWI	GGATC	3 cut(s)	12, 130, 486
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	379, 641
AgsI	TTSAA	3 cut(s)	179, 202, 229
AjnI	CCWGG	3 cut(s)	112, 345, 684
AluBI	AGCT	6 cut(s)	32, 121, 163, 175, 352, 530
AluI	AGCT	6 cut(s)	32, 121, 163, 175, 352, 530
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	3 cut(s)	12, 130, 486
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	2 cut(s)	115, 327
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	5 cut(s)	472, 473, 524, 591, 612
AvaI	CYCGRG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	518
BanI	GGYRCC	2 cut(s)	307, 667
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	114, 347, 686
BciVI	GTATCC	2 cut(s)	548, 633
BcnI	CCSGG	5 cut(s)	472, 473, 524, 591, 612
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	2 cut(s)	90, 564
BfoI	RGCGCY	1 cut(s)	311
BfuI	GTATCC	2 cut(s)	548, 633
Bme1390I	CCNGG	8 cut(s)	114, 347, 472, 473, 524, 591, 612, 686
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	3 cut(s)	309, 371, 669
BmrFI	CCNGG	8 cut(s)	114, 347, 472, 473, 524, 591, 612, 686
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	48, 368
Bpu10I	CCTNAGC	1 cut(s)	303
BpuMI	CCSGG	5 cut(s)	472, 473, 524, 591, 612
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	16, 470, 471, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 641
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	3 cut(s)	114, 347, 686
BseDI	CCNNGG	4 cut(s)	16, 470, 471, 509
BseGI	GGATG	2 cut(s)	283, 342
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	379, 641
BseMII	CTCAG	3 cut(s)	294, 369, 373
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	518
BshFI	GGCC	2 cut(s)	117, 329
BshNI	GGYRCC	2 cut(s)	307, 667
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	4 cut(s)	472, 524, 590, 612
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	379, 641
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	117, 329
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	77, 518
Bsp143I	GATC	4 cut(s)	4, 135, 294, 478
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	3 cut(s)	104, 275, 394
BspANI	GGCC	2 cut(s)	117, 329
BspCNI	CTCAG	3 cut(s)	295, 370, 372
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	309, 371, 669
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	3 cut(s)	12, 130, 486
BspT107I	GGYRCC	2 cut(s)	307, 667
BssECI	CCNNGG	4 cut(s)	16, 470, 471, 509
BssMI	GATC	4 cut(s)	4, 135, 294, 478
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	3 cut(s)	114, 347, 686
Bst4CI	ACNGT	3 cut(s)	24, 91, 520
BstACI	GRCGYC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	101, 572
BstC8I	GCNNGC	4 cut(s)	119, 123, 165, 564
BstDEI	CTNAG	3 cut(s)	303, 359, 378
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	283, 342
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	7, 138, 297, 481
BstMBI	GATC	4 cut(s)	4, 135, 294, 478
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 101, 151, 154, 160, 169, 400, 536, 572
BstNI	CCWGG	3 cut(s)	114, 347, 686
BstPI	GGTNACC	1 cut(s)	542
BstSCI	CCNGG	8 cut(s)	112, 345, 470, 471, 522, 589, 610, 684
BstSFI	CTRYAG	2 cut(s)	90, 564
BstSLI	GKGCMC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	135, 478
BstYI	RGATCY	2 cut(s)	135, 478
BsuI	GTATCC	2 cut(s)	548, 633
BsuRI	GGCC	2 cut(s)	117, 329
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	283, 342
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 375, 516
Cac8I	GCNNGC	4 cut(s)	119, 123, 165, 564
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	327
Cfr9I	CCCGGG	1 cut(s)	471
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	2 cut(s)	17, 268
DdeI	CTNAG	3 cut(s)	303, 359, 378
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	4 cut(s)	6, 137, 296, 480
DpnII	GATC	4 cut(s)	4, 135, 294, 478
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	471
Eco91I	GGTNACC	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	327
EcoO65I	GGTNACC	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	112, 345, 684
EcoT14I	CCWWGG	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	20, 271
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	16, 267
FokI	GGATG	2 cut(s)	290, 329
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	48, 368
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	117, 329
HapII	CCGG	4 cut(s)	472, 524, 590, 612
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	20, 271
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	647
HindII	GTYRAC	1 cut(s)	647
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	4 cut(s)	472, 524, 590, 612
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	2 cut(s)	485, 510
Hpy188III	TCNNGA	4 cut(s)	27, 229, 259, 268
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	3 cut(s)	24, 91, 520
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	323, 403, 566
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 101, 151, 154, 160, 169, 400, 536, 572
HpyF3I	CTNAG	3 cut(s)	303, 359, 378
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	20, 271
HspAI	GCGC	1 cut(s)	308
KasI	GGCGCC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	4, 135, 294, 478
LmnI	GCTCC	3 cut(s)	29, 349, 580
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	427, 542
MalI	GATC	4 cut(s)	6, 137, 296, 480
MboI	GATC	4 cut(s)	4, 135, 294, 478
MboII	GAAGA	3 cut(s)	226, 293, 418
MflI	RGATCY	2 cut(s)	135, 478
MhlI	GDGCHC	2 cut(s)	77, 518
MluCI	AATT	2 cut(s)	197, 691
Mly113I	GGCGCC	1 cut(s)	308
MnlI	CCTC	6 cut(s)	92, 298, 373, 384, 469, 504
MroXI	GAANNNNTTC	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	121, 163
MspI	CCGG	4 cut(s)	472, 524, 590, 612
MspR9I	CCNGG	8 cut(s)	114, 347, 472, 473, 524, 591, 612, 686
MvaI	CCWGG	3 cut(s)	114, 347, 686
MwoI	GCNNNNNNNGC	9 cut(s)	92, 101, 151, 154, 160, 169, 400, 536, 572
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	5 cut(s)	472, 473, 524, 591, 612
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	4 cut(s)	4, 135, 294, 478
NlaIII	CATG	2 cut(s)	20, 271
NlaIV	GGNNCC	3 cut(s)	309, 371, 669
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	255
PfoI	TCCNGGA	3 cut(s)	345, 522, 589
PluTI	GGCGCC	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	112, 345, 684
PspEI	GGTNACC	1 cut(s)	542
PspGI	CCWGG	3 cut(s)	112, 345, 684
PspN4I	GGNNCC	3 cut(s)	309, 371, 669
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	135, 478
PvuII	CAGCTG	2 cut(s)	121, 163
Sau3AI	GATC	4 cut(s)	4, 135, 294, 478
Sau96I	GGNCC	1 cut(s)	327
SbfI	CCTGCAGG	1 cut(s)	568
ScrFI	CCNGG	8 cut(s)	114, 347, 472, 473, 524, 591, 612, 686
SdaI	CCTGCAGG	1 cut(s)	568
SduI	GDGCHC	2 cut(s)	77, 518
SfcI	CTRYAG	2 cut(s)	90, 564
SfoI	GGCGCC	1 cut(s)	309
SmaI	CCCGGG	1 cut(s)	473
Sse8387I	CCTGCAGG	1 cut(s)	568
Sse9I	AATT	2 cut(s)	197, 691
SsiI	CCGC	3 cut(s)	104, 275, 394
SspDI	GGCGCC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	8 cut(s)	112, 345, 470, 471, 522, 589, 610, 684
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	24, 91, 520
TaiI	ACGT	1 cut(s)	401
TasI	AATT	2 cut(s)	197, 691
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	255
TscAI	CASTG	3 cut(s)	85, 382, 523
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	50, 284, 294, 331, 504
TspGWI	ACGGA	1 cut(s)	278
TspMI	CCCGGG	1 cut(s)	471
TspRI	CASTG	3 cut(s)	85, 382, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmaI	CCCGGG	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.