Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

22148118 .. 22148921

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGATCCGCATGGGCATAACCAACCCCAATCTATGGGGATGGTAGGTAGTGGAGCTCAGTTGACATACGGTTCTAACCCGTATCAGCATAATCAAATGGTTGGGAGCCCAAATCCGGGGTCAGTTTCCGCAACAGTGGGAGCTATGCAATCCGCTAGTCAATCACCTGGAGCTCAGCTTGCGCAGCACCAGCTTGCACAGCACCAGCTTGCTTATCAGCATATACACCAGCAGCAGCAGCAGCAACTTCAGCAGCAGCTGCAAACTTTCTGGGCAAACCAGTATCAAGAAATCGACAAGGTCACCGATTTCAAGAACCATAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAGAATGATATCAGCCGAGGCACCTGTGATATTTGCCAGGGCATGTGAAATGTTCATATTGGAATTAACATTGCGGTCTTGGAATCACACGGAAGAGAACAAGTGGAGGACACTCCAGAAGAATGACATCGCAGCTGCAATCACAAGGACTGATATCTTTGATTTCTTGGTAGACATTGTCCCAAGGGAGGATCTGAAAGATGAAGTCCTTGGGTCGATTCCGAGGGGTACAGTTTCTGTTGGGGGGCCTGCCGATGCACTTCCATACTGCTATATGCCGCCTCAGCACGCACCTCAGGTGGGGGCTCCCGGAATGATGATGGGTAAGCCTATGATGGATCCGTCTATGTATGCTCAACAGTCTAACCCCTACATGAGTCAGCCAATGTGGCAGCAGGCTCCAGACCAGCAACAGTCGCCATCAGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

268

Amino Acids

29.82

Weight (kDa)

5.83

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	100 - 171	7.3e-16	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	108 - 171	8.3e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	5 cut(s)	8, 129, 153, 445, 650
AclWI	GGATC	5 cut(s)	12, 347, 570, 704, 717
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 331, 336, 559, 671
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	166, 407
AluBI	AGCT	8 cut(s)	56, 143, 173, 178, 193, 208, 259, 506
AluI	AGCT	8 cut(s)	56, 143, 173, 178, 193, 208, 259, 506
Alw21I	GWGCWC	2 cut(s)	58, 175
AlwI	GGATC	5 cut(s)	12, 347, 570, 704, 717
AlwNI	CAGNNNCTG	2 cut(s)	259, 608
AoxI	GGCC	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	617
AsuC2I	CCSGG	2 cut(s)	117, 681
AsuHPI	GGTGA	2 cut(s)	156, 295
AxyI	CCTNAGG	1 cut(s)	666
BamHI	GGATCC	2 cut(s)	4, 709
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	4 cut(s)	58, 110, 175, 679
Bbv12I	GWGCWC	2 cut(s)	58, 175
BbvCI	CCTCAGC	1 cut(s)	654
BccI	CCATC	4 cut(s)	34, 685, 700, 799
BciT130I	CCWGG	2 cut(s)	168, 409
BcnI	CCSGG	2 cut(s)	117, 681
BfaI	CTAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	760
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	4 cut(s)	117, 168, 409, 681
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	7 cut(s)	6, 107, 393, 618, 678, 711, 771
BmrFI	CCNGG	4 cut(s)	117, 168, 409, 681
BmsI	GCATC	1 cut(s)	616
BpmI	CTGGAG	3 cut(s)	189, 470, 756
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	117, 681
BsaJI	CCNNGG	7 cut(s)	116, 330, 387, 408, 554, 580, 593
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 331, 336, 559, 671
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	168, 409
BseDI	CCNNGG	7 cut(s)	116, 330, 387, 408, 554, 580, 593
BseGI	GGATG	2 cut(s)	45, 373
BseLI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 331, 336, 559, 671
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	4 cut(s)	71, 188, 668, 680
BseNI	ACTGG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	619
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	58, 175
BsiSI	CCGG	2 cut(s)	116, 681
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	7 cut(s)	34, 115, 116, 331, 336, 559, 671
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	619
Bsp1286I	GDGCHC	4 cut(s)	58, 110, 175, 679
Bsp143I	GATC	5 cut(s)	4, 339, 562, 709, 796
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	8, 129, 153, 445, 650
BspANI	GGCC	1 cut(s)	619
BspCNI	CTCAG	4 cut(s)	70, 187, 667, 679
BspLI	GGNNCC	7 cut(s)	6, 107, 393, 618, 678, 711, 771
BspPI	GGATC	5 cut(s)	12, 347, 570, 704, 717
BspT107I	GGYRCC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	7 cut(s)	116, 330, 387, 408, 554, 580, 593
BssMI	GATC	5 cut(s)	4, 339, 562, 709, 796
BssT1I	CCWWGG	3 cut(s)	330, 554, 580
Bst2UI	CCWGG	2 cut(s)	168, 409
Bst4CI	ACNGT	5 cut(s)	71, 136, 604, 732, 786
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	6 cut(s)	180, 195, 210, 621, 660, 768
BstDEI	CTNAG	4 cut(s)	57, 174, 654, 666
BstEII	GGTNACC	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	45, 373
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	5 cut(s)	7, 342, 565, 712, 799
BstMBI	GATC	5 cut(s)	4, 339, 562, 709, 796
BstNI	CCWGG	2 cut(s)	168, 409
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	4 cut(s)	115, 166, 407, 679
BstX2I	RGATCY	3 cut(s)	4, 562, 709
BstYI	RGATCY	3 cut(s)	4, 562, 709
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	45, 373
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	6 cut(s)	180, 195, 210, 621, 660, 768
CaiI	CAGNNNCTG	2 cut(s)	259, 608
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	3 cut(s)	11, 414, 745
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	4 cut(s)	57, 174, 654, 666
DpnI	GATC	5 cut(s)	6, 341, 564, 711, 798
DpnII	GATC	5 cut(s)	4, 339, 562, 709, 796
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	3 cut(s)	330, 554, 580
Eco24I	GRGCYC	4 cut(s)	58, 110, 175, 679
Eco32I	GATATC	2 cut(s)	381, 526
Eco53kI	GAGCTC	2 cut(s)	56, 173
Eco57I	CTGAAG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	666
Eco91I	GGTNACC	1 cut(s)	301
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	166, 407
EcoRV	GATATC	2 cut(s)	381, 526
EcoT14I	CCWWGG	3 cut(s)	330, 554, 580
EcoT38I	GRGCYC	4 cut(s)	58, 110, 175, 679
ErhI	CCWWGG	3 cut(s)	330, 554, 580
FaeI	CATG	3 cut(s)	14, 417, 748
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	3 cut(s)	10, 413, 744
FblI	GTMKAC	1 cut(s)	543
FokI	GGATG	2 cut(s)	52, 380
FriOI	GRGCYC	4 cut(s)	58, 110, 175, 679
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GsuI	CTGGAG	3 cut(s)	189, 470, 756
HaeIII	GGCC	1 cut(s)	619
HapII	CCGG	2 cut(s)	116, 681
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	14, 417, 748
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	3 cut(s)	454, 589, 748
HpaII	CCGG	2 cut(s)	116, 681
HphI	GGTGA	2 cut(s)	156, 295
Hpy166II	GTNNAC	2 cut(s)	63, 544
Hpy188I	TCNGA	3 cut(s)	567, 594, 796
Hpy188III	TCNNGA	5 cut(s)	287, 313, 343, 487, 773
Hpy8I	GTNNAC	2 cut(s)	63, 544
HpyAV	CCTTC	2 cut(s)	335, 349
HpyCH4III	ACNGT	5 cut(s)	71, 136, 604, 732, 786
HpyCH4V	TGCA	5 cut(s)	148, 197, 262, 509, 629
HpyF3I	CTNAG	4 cut(s)	57, 174, 654, 666
Hsp92II	CATG	3 cut(s)	14, 417, 748
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	5 cut(s)	4, 339, 562, 709, 796
LmnI	GCTCC	6 cut(s)	53, 105, 140, 170, 682, 775
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	6, 341, 564, 711, 798
MboI	GATC	5 cut(s)	4, 339, 562, 709, 796
MboII	GAAGA	3 cut(s)	358, 476, 502
MflI	RGATCY	3 cut(s)	4, 562, 709
MhlI	GDGCHC	4 cut(s)	58, 110, 175, 679
MluCI	AATT	1 cut(s)	434
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	7 cut(s)	358, 382, 471, 553, 588, 663, 675
MseI	TTAA	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	259, 506
MspI	CCGG	2 cut(s)	116, 681
MspR9I	CCNGG	4 cut(s)	117, 168, 409, 681
MvaI	CCWGG	2 cut(s)	168, 409
NciI	CCSGG	2 cut(s)	117, 681
NdeII	GATC	5 cut(s)	4, 339, 562, 709, 796
NlaIII	CATG	3 cut(s)	14, 417, 748
NlaIV	GGNNCC	7 cut(s)	6, 107, 393, 618, 678, 711, 771
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	301
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	454, 589
PflFI	GACNNNGTC	2 cut(s)	299, 548
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	679
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp6I	CCWGG	2 cut(s)	166, 407
PspEI	GGTNACC	1 cut(s)	301
PspGI	CCWGG	2 cut(s)	166, 407
PspN4I	GGNNCC	7 cut(s)	6, 107, 393, 618, 678, 711, 771
PspPI	GGNCC	1 cut(s)	617
PstNI	CAGNNNCTG	2 cut(s)	259, 608
PsuI	RGATCY	3 cut(s)	4, 562, 709
PsyI	GACNNNGTC	2 cut(s)	299, 548
PvuII	CAGCTG	2 cut(s)	259, 506
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	58, 175
SaqAI	TTAA	1 cut(s)	437
Sau3AI	GATC	5 cut(s)	4, 339, 562, 709, 796
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	4 cut(s)	117, 168, 409, 681
SduI	GDGCHC	4 cut(s)	58, 110, 175, 679
SfaNI	GCATC	1 cut(s)	616
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	5 cut(s)	8, 129, 153, 445, 650
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	4 cut(s)	115, 166, 407, 679
StyI	CCWWGG	3 cut(s)	330, 554, 580
TaaI	ACNGT	5 cut(s)	71, 136, 604, 732, 786
TaqI	TCGA	2 cut(s)	294, 587
TasI	AATT	1 cut(s)	434
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	454, 589
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	368, 415, 588
TspGWI	ACGGA	2 cut(s)	476, 702
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	2 cut(s)	299, 548
Van91I	CCANNNNNTGG	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	334
XceI	RCATGY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.