Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

20451083 .. 20452671

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGATCAACAAGGACAATCATCAGCTATGAACTATGGTTCAAACCCATATCAAACCAACGCCATGACCACTACACCAACCGGTTCAGACCATCCAGCTTACCATCAGATCCACCAGCAACAACAACAACAGCTCACTCAACAGCTTCAATCTTTCTGGGAGACTCAATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCAAGAATCAAGAAAATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGTTGTGTTCGCCAGGGCCTGCGAGATGTTTATTCTGGAGCTTACGTTAAGGTCTTGGAACCATACTGAGGAGAACAAGAGAAGGACGTTGCAGAAGAATGATATCGCGGCTGCGGTGACTAGAACTGATATTTTTGATTTTCTTGTGGATATTGTTCCTCGGGAGGATCTTCGTGATGAAGTCTTGGGTGGTGTTGGTGCTGAAGCTGCTACAGCTGCGGGTTATCCGTATGGATACTTGCCTCCTGGAACAGCTCCAATTGGGAACCCGGGAATGGTTATGGGTAACCCGGGCGCGTATCCGCCGAACCCGTATATGGGTCAGCCAATGTGGCAACAACCAGGACCTGAGCAGCAGGATCCTGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

217

Amino Acids

24.31

Weight (kDa)

4.97

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	58 - 133	3.2e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	70 - 133	9.5e-18	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	2 cut(s)	389, 578
AciI	CCGC	4 cut(s)	389, 395, 500, 584
AclWI	GGATC	5 cut(s)	12, 103, 456, 635, 648
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	5 cut(s)	217, 349, 556, 598, 599
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	42, 149, 172, 199
AjnI	CCWGG	3 cut(s)	293, 526, 622
AluBI	AGCT	9 cut(s)	26, 98, 133, 145, 245, 322, 488, 497, 536
AluI	AGCT	9 cut(s)	26, 98, 133, 145, 245, 322, 488, 497, 536
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	5 cut(s)	12, 103, 456, 635, 648
AlwNI	CAGNNNCTG	2 cut(s)	300, 629
Ama87I	CYCGRG	3 cut(s)	441, 550, 571
AoxI	GGCC	2 cut(s)	270, 297
ApeKI	GCWGC	4 cut(s)	392, 488, 497, 634
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	280, 578
AspS9I	GGNCC	2 cut(s)	297, 626
AsuC2I	CCSGG	4 cut(s)	551, 552, 572, 573
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	3 cut(s)	441, 550, 571
AvaII	GGWCC	1 cut(s)	626
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	379, 475, 484, 646
BccI	CCATC	2 cut(s)	99, 111
BciT130I	CCWGG	3 cut(s)	295, 528, 624
BciVI	GTATCC	2 cut(s)	509, 591
BcnI	CCSGG	4 cut(s)	551, 552, 572, 573
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	281
BfuI	GTATCC	2 cut(s)	509, 591
BglI	GCCNNNNNGGC	1 cut(s)	613
BisI	GCNGC	5 cut(s)	390, 393, 489, 498, 635
BlsI	GCNGC	5 cut(s)	391, 394, 490, 499, 636
Bme1390I	CCNGG	7 cut(s)	295, 528, 551, 552, 572, 573, 624
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	3 cut(s)	441, 550, 571
BmgT120I	GGNCC	2 cut(s)	297, 626
BmiI	GGNNCC	4 cut(s)	279, 341, 548, 642
BmrFI	CCNGG	7 cut(s)	295, 528, 551, 552, 572, 573, 624
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	630
BpuMI	CCSGG	4 cut(s)	551, 552, 572, 573
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	273, 294, 440, 550, 571
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 349, 556, 598, 599
Bse118I	RCCGGY	1 cut(s)	80
BseBI	CCWGG	3 cut(s)	295, 528, 624
BseDI	CCNNGG	5 cut(s)	273, 294, 440, 550, 571
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	5 cut(s)	217, 349, 556, 598, 599
BseMII	CTCAG	2 cut(s)	339, 621
BseRI	GAGGAG	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	4 cut(s)	379, 475, 484, 646
Bsh1236I	CGCG	2 cut(s)	389, 578
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	272, 299
BshNI	GGYRCC	1 cut(s)	277
BshTI	ACCGGT	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	273
BsiHKCI	CYCGRG	3 cut(s)	441, 550, 571
BsiSI	CCGG	3 cut(s)	81, 551, 572
BslI	CCNNNNNNNGG	5 cut(s)	217, 349, 556, 598, 599
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	272, 299
BsoBI	CYCGRG	3 cut(s)	441, 550, 571
Bsp143I	GATC	5 cut(s)	4, 108, 264, 448, 640
BspACI	CCGC	4 cut(s)	389, 395, 500, 584
BspANI	GGCC	2 cut(s)	272, 299
BspCNI	CTCAG	2 cut(s)	340, 622
BspFNI	CGCG	2 cut(s)	389, 578
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	279, 341, 548, 642
BspPI	GGATC	5 cut(s)	12, 103, 456, 635, 648
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	5 cut(s)	273, 294, 440, 550, 571
BssMI	GATC	5 cut(s)	4, 108, 264, 448, 640
BssNI	GRCGYC	1 cut(s)	278
Bst2UI	CCWGG	3 cut(s)	295, 528, 624
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	348, 630
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	2 cut(s)	389, 578
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	280, 578
BstKTI	GATC	5 cut(s)	7, 111, 267, 451, 643
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	5 cut(s)	4, 108, 264, 448, 640
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 494, 497, 613
BstNI	CCWGG	3 cut(s)	295, 528, 624
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	7 cut(s)	293, 526, 549, 550, 570, 571, 622
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	2 cut(s)	389, 578
BstV1I	GCAGC	4 cut(s)	379, 475, 484, 646
BstX2I	RGATCY	3 cut(s)	108, 448, 640
BstYI	RGATCY	3 cut(s)	108, 448, 640
BstZI	CGGCCG	1 cut(s)	270
BsuI	GTATCC	2 cut(s)	509, 591
BsuRI	GGCC	2 cut(s)	272, 299
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	2 cut(s)	300, 629
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	2 cut(s)	280, 578
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	297, 626
Cfr9I	CCCGGG	2 cut(s)	550, 571
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	2 cut(s)	64, 238
DdeI	CTNAG	2 cut(s)	348, 630
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	5 cut(s)	6, 110, 266, 450, 642
DpnII	GATC	5 cut(s)	4, 108, 264, 448, 640
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	573
EclXI	CGGCCG	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	626
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	3 cut(s)	441, 550, 571
Eco91I	GGTNACC	1 cut(s)	566
EcoO109I	RGGNCCY	2 cut(s)	297, 626
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	293, 526, 622
EcoRV	GATATC	1 cut(s)	385
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
FaeI	CATG	2 cut(s)	67, 241
FatI	CATG	2 cut(s)	63, 237
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	390, 393, 489, 498, 635
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	5 cut(s)	390, 393, 489, 498, 635
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	2 cut(s)	279, 577
GluI	GCNGC	5 cut(s)	390, 393, 489, 498, 635
GsuI	CTGGAG	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	272, 299
HapII	CCGG	3 cut(s)	81, 551, 572
HhaI	GCGC	2 cut(s)	280, 578
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	67, 241
Hin6I	GCGC	2 cut(s)	278, 576
HinP1I	GCGC	2 cut(s)	278, 576
HinfI	GANTC	2 cut(s)	163, 225
HpaII	CCGG	3 cut(s)	81, 551, 572
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	88, 108
Hpy188III	TCNNGA	7 cut(s)	199, 229, 238, 317, 443, 455, 644
HpyAV	CCTTC	2 cut(s)	221, 357
HpyCH4IV	ACGT	2 cut(s)	326, 368
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 494, 497, 613
HpyF3I	CTNAG	2 cut(s)	348, 630
HpySE526I	ACGT	2 cut(s)	326, 368
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	67, 241
HspAI	GCGC	2 cut(s)	278, 576
KasI	GGCGCC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	4, 108, 264, 448, 640
LmnI	GCTCC	2 cut(s)	319, 541
Lsp1109I	GCAGC	4 cut(s)	379, 475, 484, 646
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	326, 368
MaeIII	GTNAC	2 cut(s)	397, 566
MalI	GATC	5 cut(s)	6, 110, 266, 450, 642
MboI	GATC	5 cut(s)	4, 108, 264, 448, 640
MboII	GAAGA	3 cut(s)	263, 388, 443
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	3 cut(s)	108, 448, 640
MluCI	AATT	3 cut(s)	167, 540, 649
Mly113I	GGCGCC	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	268, 343, 439, 450, 534
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	3 cut(s)	81, 551, 572
MspR9I	CCNGG	7 cut(s)	295, 528, 551, 552, 572, 573, 624
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	295, 528, 624
MvnI	CGCG	2 cut(s)	389, 578
MwoI	GCNNNNNNNGC	4 cut(s)	488, 494, 497, 613
NarI	GGCGCC	1 cut(s)	278
NciI	CCSGG	4 cut(s)	551, 552, 572, 573
NdeII	GATC	5 cut(s)	4, 108, 264, 448, 640
NlaIII	CATG	2 cut(s)	67, 241
NlaIV	GGNNCC	4 cut(s)	279, 341, 548, 642
NmeAIII	GCCGAG	2 cut(s)	248, 298
NmuCI	GTSAC	1 cut(s)	397
PagI	TCATGA	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	391, 394, 490, 499, 636
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	293, 526, 622
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	3 cut(s)	293, 526, 622
PspN4I	GGNNCC	4 cut(s)	279, 341, 548, 642
PspPI	GGNCC	2 cut(s)	297, 626
PspPPI	RGGWCCY	1 cut(s)	626
PstNI	CAGNNNCTG	2 cut(s)	300, 629
PsuI	RGATCY	3 cut(s)	108, 448, 640
PvuII	CAGCTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	5 cut(s)	390, 393, 489, 498, 635
Sau3AI	GATC	5 cut(s)	4, 108, 264, 448, 640
Sau96I	GGNCC	2 cut(s)	297, 626
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	7 cut(s)	295, 528, 551, 552, 572, 573, 624
SfcI	CTRYAG	1 cut(s)	492
SfoI	GGCGCC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	626
SmaI	CCCGGG	2 cut(s)	552, 573
Sse9I	AATT	3 cut(s)	167, 540, 649
SsiI	CCGC	4 cut(s)	389, 395, 500, 584
SspDI	GGCGCC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	7 cut(s)	293, 526, 549, 550, 570, 571, 622
TaiI	ACGT	2 cut(s)	329, 371
TasI	AATT	3 cut(s)	167, 540, 649
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	4 cut(s)	392, 488, 497, 634
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	4 cut(s)	44, 254, 264, 474
TspGWI	ACGGA	1 cut(s)	498
TspMI	CCCGGG	2 cut(s)	550, 571
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	626
XmaI	CCCGGG	2 cut(s)	550, 571
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.