Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Forward (+)

3147271 .. 3150053

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGATCAGCAAGGACATGGGCAACCCCAATCGATGGGGATGGTAGGTAGTGGAGCTCAAATGGCATATGGGACTGCTCCGTATCAGCATACTCAAATGGTAGGGAGTCCGAATCCTGCAACAGTTGGTGCACCAGTTGGAGGCATTCAAGCTAGTAATCAATCTGCCGGAGCTCAGCTTGCACAACATCAGCTTGCTTATCAGCACATTCACCAGCAGCAGCAGCAACAACTTCAACAACAATTGCAAAATTTTTGGGCGGGTCAGTTTCAAGAGATTGAGAAGGTAACTGATTTCAAGAACCATAGCCTTCCTCTAGCAAGGATCAAGAAGATCATGAAAGCTGACGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTGATCTTTGCAAGGGCATGTGAAATGTTCATCTTGGAGTTGACCTTGCGGTCTTGGAATCACACAGAAGAGAATAAAAGGAGGACACTTCAGAAGAATGACATTGCAGCTGCAATCACAAGGACTGATATATTTGATTTCTTGGTAGACATCGTGCCGAGAGAGGATCTGAAAGACGAAGTCCTTGCATCCATTCCAAGGGGAACGGTTTCTGTTGGGGCTGCTGATGCACTTCCTCCATACTGCTATATGCCACCTCAGCATGGACCTCAGGTTGGGGCTCCTGGGATGATCATGGGCAAGCCTATGATGGACCCATCTATGTATGGGCAACAGTCTCACCCCTACATGGGTCCTCAAATGTGGTCGCAGGCACCAGATCAGCAGCAACAGCAGCAGCAGCAATCACCATCTGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048579 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000242 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

268

Amino Acids

29.61

Weight (kDa)

5.89

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	95 - 166	1.7e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	103 - 166	3.3e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	376, 754
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	2 cut(s)	260, 430
AclWI	GGATC	3 cut(s)	12, 332, 555
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	455
AfiI	CCNNNNNNNGG	7 cut(s)	34, 140, 579, 644, 656, 730, 731
AgsI	TTSAA	4 cut(s)	149, 236, 272, 298
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	8 cut(s)	56, 152, 173, 178, 193, 344, 371, 491
AluI	AGCT	8 cut(s)	56, 152, 173, 178, 193, 344, 371, 491
Alw21I	GWGCWC	3 cut(s)	58, 133, 175
Alw26I	GTCTC	1 cut(s)	723
Alw44I	GTGCAC	1 cut(s)	129
AlwI	GGATC	3 cut(s)	12, 332, 555
ApaLI	GTGCAC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	589
AspS9I	GGNCC	3 cut(s)	647, 694, 734
AsuHPI	GGTGA	3 cut(s)	203, 713, 780
AvaII	GGWCC	3 cut(s)	647, 694, 734
AxyI	CCTNAGG	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	376, 754
BanII	GRGCYC	3 cut(s)	58, 175, 664
Bbv12I	GWGCWC	3 cut(s)	58, 133, 175
BbvCI	CCTCAGC	2 cut(s)	372, 639
BccI	CCATC	5 cut(s)	28, 34, 685, 706, 799
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	2 cut(s)	672, 796
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	153, 317
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	3 cut(s)	647, 694, 734
BmgT120I	GGNCC	3 cut(s)	647, 694, 734
BmiI	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	578, 598
Bpu10I	CCTNAGC	2 cut(s)	372, 639
Bpu1102I	GCTNAGC	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	578, 665
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 140, 579, 644, 656, 730, 731
Bse1I	ACTGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	578, 665
BseGI	GGATG	4 cut(s)	45, 358, 569, 675
BseLI	CCNNNNNNNGG	7 cut(s)	34, 140, 579, 644, 656, 730, 731
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	188, 363, 653, 665
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	133
BshNI	GGYRCC	2 cut(s)	376, 754
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	3 cut(s)	58, 133, 175
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	7 cut(s)	34, 140, 579, 644, 656, 730, 731
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	144
Bsp1286I	GDGCHC	4 cut(s)	58, 133, 175, 664
Bsp143I	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	260, 430
BspCNI	CTCAG	4 cut(s)	187, 364, 652, 664
BspDI	ATCGAT	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
BspPI	GGATC	3 cut(s)	12, 332, 555
BspT107I	GGYRCC	2 cut(s)	376, 754
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	578, 665
BssMI	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	124, 589, 717
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	180, 195, 683, 753
BstDEI	CTNAG	4 cut(s)	174, 372, 639, 651
BstF5I	GGATG	4 cut(s)	45, 358, 569, 675
BstKTI	GATC	8 cut(s)	7, 327, 336, 387, 550, 675, 763, 799
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 179, 223, 608, 640, 772, 775, 781
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	651
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	4 cut(s)	45, 358, 569, 675
Cac8I	GCNNGC	4 cut(s)	180, 195, 683, 753
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	647, 694, 734
ClaI	ATCGAT	1 cut(s)	32
CviAII	CATG	6 cut(s)	17, 337, 399, 644, 676, 730
DdeI	CTNAG	4 cut(s)	174, 372, 639, 651
DpnI	GATC	8 cut(s)	6, 326, 335, 386, 549, 674, 762, 798
DpnII	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	56, 173
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	3 cut(s)	58, 175, 664
Eco32I	GATATC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	647, 694, 734
Eco53kI	GAGCTC	2 cut(s)	56, 173
Eco57I	CTGAAG	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	651
EcoICRI	GAGCTC	2 cut(s)	56, 173
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	664
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	3 cut(s)	58, 175, 664
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	6 cut(s)	20, 340, 402, 647, 679, 733
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	6 cut(s)	16, 336, 398, 643, 675, 729
FauI	CCCGC	1 cut(s)	253
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	672, 796
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	4 cut(s)	52, 365, 556, 682
FriOI	GRGCYC	3 cut(s)	58, 175, 664
FspBI	CTAG	2 cut(s)	153, 317
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	6 cut(s)	20, 340, 402, 647, 679, 733
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	106, 112, 439
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	203, 713, 780
Hpy166II	GTNNAC	3 cut(s)	131, 423, 529
Hpy188I	TCNGA	4 cut(s)	111, 474, 552, 796
Hpy188III	TCNNGA	4 cut(s)	272, 298, 328, 337
Hpy8I	GTNNAC	3 cut(s)	131, 423, 529
HpyAV	CCTTC	2 cut(s)	277, 320
HpyCH4III	ACNGT	3 cut(s)	124, 589, 717
HpyCH4V	TGCA	9 cut(s)	119, 131, 182, 247, 392, 488, 494, 569, 611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 179, 223, 608, 640, 772, 775, 781
HpyF3I	CTNAG	4 cut(s)	174, 372, 639, 651
Hsp92II	CATG	6 cut(s)	20, 340, 402, 647, 679, 733
Ksp22I	TGATCA	2 cut(s)	672, 796
Kzo9I	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
LmnI	GCTCC	4 cut(s)	53, 82, 170, 667
LweI	GCATC	2 cut(s)	578, 598
MaeI	CTAG	2 cut(s)	153, 317
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	8 cut(s)	6, 326, 335, 386, 549, 674, 762, 798
MboI	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
MboII	GAAGA	3 cut(s)	343, 461, 487
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	4 cut(s)	58, 133, 175, 664
MluCI	AATT	2 cut(s)	242, 250
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	589
MspA1I	CMGCKG	2 cut(s)	371, 491
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	8 cut(s)	62, 179, 223, 608, 640, 772, 775, 781
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
NlaIII	CATG	6 cut(s)	20, 340, 402, 647, 679, 733
NlaIV	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
NmeAIII	GCCGAG	1 cut(s)	564
NspI	RCATGY	1 cut(s)	402
PagI	TCATGA	1 cut(s)	336
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	112, 439
PflFI	GACNNNGTC	1 cut(s)	560
PflMI	CCANNNNNTGG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	734
Psp124BI	GAGCTC	2 cut(s)	58, 175
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	5 cut(s)	378, 663, 696, 735, 756
PspPI	GGNCC	3 cut(s)	647, 694, 734
PspPPI	RGGWCCY	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	547
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	2 cut(s)	371, 491
SacI	GAGCTC	2 cut(s)	58, 175
Sau3AI	GATC	8 cut(s)	4, 324, 333, 384, 547, 672, 760, 796
Sau96I	GGNCC	3 cut(s)	647, 694, 734
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	4 cut(s)	58, 133, 175, 664
SfaNI	GCATC	2 cut(s)	578, 598
SinI	GGWCC	3 cut(s)	647, 694, 734
Sse9I	AATT	2 cut(s)	242, 250
SsiI	CCGC	2 cut(s)	260, 430
SspMI	CTAG	2 cut(s)	153, 317
SstI	GAGCTC	2 cut(s)	58, 175
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	3 cut(s)	124, 589, 717
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	242, 250
TfiI	GAWTC	2 cut(s)	112, 439
TspDTI	ATGAA	2 cut(s)	353, 400
TspGWI	ACGGA	1 cut(s)	69
Tth111I	GACNNNGTC	1 cut(s)	560
Van91I	CCANNNNNTGG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	3 cut(s)	647, 694, 734
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	2 cut(s)	153, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.